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H5Gget_objinfo
and renamed internal functions to match up with the renamed API functions.
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----------------------
./src/H5G.c
Fixed a link count on groups. Groups were always created with
a link count of zero instead of one.
./src/H5Gpublic.h
Added H5G_NTYPES so applications can easily declare arrays
which are indexed by object type.
./src/H5O.c
Calling `H5O_link(&ent,0)' will succeed when the file is open
for read only because it's the only way to get the object's
current link count.
./tools/h5ls.c
Can take non-group object names on the command line (and
multiple objects). Reorganized to be more extendible. The
link count is displayed for `-v'.
./src/H5F.c
Dumping of cache statistics is controlled by only the
HDF5_DEBUG environment variable and not the H5F_ACC_DEBUG flag
for H5Fopen() and H5Fcreate() since this makes it similar to
the other debugging options.
./src/H5R.c
./test/ragged.c
./test/Makefile.in
Tests pass but still a little work left to be done.
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----------------------
./src/H5G.c
./src/H5Gpublic.h
./test/links.c
Fixed a bug in H5Gstat() that caused the wrong information to
be returned sometimes. Added check for named data types.
./test/extend.c
./test/links.c
./test/mtime.c
Added `all tests passed' messages.
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----------------------
./MANIFEST
./doc/html/H5.format.html
./src/H5O.c
./src/H5Oprivate.h
./src/H5Omtime.c [NEW]
./src/H5private.h
./src/Makefile.in
Added the modification time message. If an object header has
this message then it's value is updated with the current time
whenever anything changes in the object header.
./acconfig.h
./configure.in
Alas, there seems to be no standard way to convert a string
time like 19980727122800 in UTC to a time_t since mktime()
only converts local times to time_t. So I've modified the
configuration to check for various ways of getting the time
zone information:
* Added checks for the `tm_gmtoff' field of `struct tm'.
* Added a check for the `timezone' global variable.
* Added a check for `struct timezone'.
* Added a check for BSDgettimeofday().
* Added a check for gettimeofday() although it doesn't
actually set the timezone argument on some systems.
* Added a check to see if `tm_zone' is a member of `struct tm'.
* Added a check to see if `tzname' is a global variable.
* Added a check to see if `struct tm' is defined in time.h
or sys/time.h.
It's not difficult to get the right UTC modification message
into the object header, but some systems might have problems
getting the right time back out (Irix64 is one) and those
systems will report zero for the H5G_stat_t.mtime from an
H5Gstat() call as if the mtime message isn't even present. It
will, however, continue to be updated as normal.
./src/H5G.c
./src/H5Gpublic.h
The H5G_stat_t struct now contains an `mtime' field which will
hold the object modification time. If the object has no
object modification time then the `mtime' will be initialized
to zero.
Fixed a bug in H5G_stat() that caused the `objno' field of the
H5G_stat_t to be set incorrectly on some machines.
./src/H5D.c
Writing to external datasets fail if the hdf5 file is not open
for writing.
A modification time message is added to the dataset object
header when it's created and H5O_touch() is called from
H5D_write() to update that message.
./src/H5T.c
Fixed a bug in H5Tget_member_dims() that caused a segmentation
fault if one of the output array arguments was the null
pointer.
Relaxed the member dimension checking in H5Tinsert_array() so
it can also be used for scalar members.
./test/Makefile.in
Added additional file names to the `mostlyclean' target.
./tools/h5dump.c
./tools/h5tools.h
Increased the temporary buffer size to 1MB.
Added support for printing compound data types with array
members.
When printing H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR we escape
double quote characters.
./tools/h5ls.c
Changed the output format a little because we were starting to
get too much info to fit on a line. Without `--verbose' each
object occupies one line of output. Otherwise, additional
information is printed below the object name: object file
address, comment, and modification time. If `--dump' is given
then the data is printed after the other information.
./test/cmpd_dset.c
Changed the way the dataset is initialized to be more uniform.
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----------------------
./src/H5A.c
./src/H5Apublic.h
./test/tattr.c
Switched the order of the second and third argument of
H5Aget_name() to make it consistent with other functions that
take buffers and buffer sizes.
./src/H5G.c
./src/H5Gpublic.h
./src/H5Gprivate.h
The H5Gget_comment() function returns the size of the comment
including the null terminator. If the object has no comment
then zero is returned. If an error occurs then a negative
value is returned.
./MANIFEST
./tools/Makefile.in
./tools/h5tools.h [NEW]
./tools/h5dump.c [NEW]
Created a library for printing values of datasets in a way
that looks nice. It's not done yet, but I needed it for
debugging the contents of files from Jim Reus.
./tools/h5ls.c
Added the `-d' and `--dump' options which cause the contents
of a dataset to be printed. Added `-w N' and `--width=N'
options to control how wide the raw data output should be. If
you want single-column output then say `-w1'.
Printing dataset values can now handle datasets of any integer
or floating point atomic type. As a special case, integers
which are one byte wide are treated a character strings for
now.
Sample output:
$ h5ls --dump --width=60 banana.hdf
ARCHIVE 0:0:0:744 Dataset {52/Inf}
Data:
(0) "U struct complex { double R; double I; };\012V"
(43) " double;\012"
U 0:0:0:2500 Dataset {256/512}
Data: printing of compound data types is not implemented yet
V 0:0:0:3928 Dataset {256/512}
Data:
(0) 0, 0.015625, 0.03125, 0.046875, 0.0625,
(5) 0.078125, 0.09375, 0.109375, 0.125, 0.140625,
(10) 0.15625, 0.171875, 0.1875, 0.203125, 0.21875,
(15) 0.234375, 0.25, 0.265625, 0.28125, 0.296875,
...
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----------------------
./src/H5.c
Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id.
Added array tracing where the array rank is stored in a simple
data space. Just use the name of the data space argument when
declaring the array argument:
herr_t
H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op,
const hssize_t start[/*space_id*/],
const hsize_t _stride[/*space_id*/],
const hsize_t count[/*space_id*/],
const hsize_t _block[/*space_id*/])
and when the program runs you'll see array values printed:
H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET,
start=0xbfffef4c {0}, _stride=NULL,
count=0xbfffef44 {64},
_block=NULL) = SUCCEED;
Added more symbolic data types to the tracing output.
./src/H5A.c
./src/H5Apublic.h
./src/H5D.c
./src/H5Dpublic.h
./src/H5F.c
./src/H5Fpublic.h
./src/H5G.c
./src/H5Gpublic.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Spublic.h
./src/H5Sselect.c
./src/H5Ssimp.c
./src/H5TB.c
./src/H5V.c
Changed some API argument names to be more consistent with
other API functions and to produce better tracing output.
Reformatted some long lines. Indented printf statements.
./tools/h5ls.c
Fixed warnings about unsigned vs. signed comparisons.
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----------------------
./src/H5Gpublic.h
./src/H5Gprivate.h
./src/H5G.c
./test/dsets.c
./doc/html/Groups.html
Added the H5Gset_comment() and H5Gget_comment() functions
described in an earlier e-mail.
./src/H5.c
Fixed a bug in the tracing code that caused certain data space
enum types to not be printed. Nested case statements can get
confusing to the eyes!
./tools/h5ls.c
Prints the first 50 bytes or so of object comments.
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----------------------
./html/H5.format.html
./src/H5E.c
./src/H5Epublic.h
./src/H5F.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gprivate.h
./src/h5ls.c
./test/Makefile.in
Symbolic links are now supported. The ./test/links program
will create a `links.h5' file that demonstrates hard links,
soft links, dangling links, and recursive links. A symbolic
link is a symbol table entity and doesn't have an object
header. It's format is described in H5.format.hml.
./src/H5G.c
./src/H5Gpublic.h
./src/h5ls.c
Implemented H5Gstat() and H5Gget_linkval() as documented by
Quincey. The `H5G_type_t type' field of `H5G_stat_t' was
changed to `int type' because H5G_type_t was already used and
the `type' data type should be open-ended.
./src/H5Ffamily.c
Removed an incorrect diagnostic message.
./test/big.c
Added read/write calls to test partial I/O to big contiguous
datasets. With no arguments it writes to a dataset and prints
the list of points written which should be redirected to a
file. With an argument (the name of a file containing the
stdout of a run with no arguments) values are read from the
dataset. One would typically say `big >x && big x'.
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----------------------
./configure.in
Moved setting of compiler warning switches earlier in the file.
Turned on more warning switches to gcc.
./config/linux
Prints a warning if the gcc version is less than 2.8.1 since
that version has problems with register allocation for `long
long'.
./html/Datatypes.html
Documented sharing of data types between datasets.
./src/H5G.c
./src/H5Gpublic.h
Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard
links. Still have soft links to do.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5HLprivate.h
./src/H5I.c
./src/H5Iprivate.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5Ssimp.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5detect.c
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tstab.c
Fixed comparisons between signed and unsigned values. Fixed
warnings about unused function arguments.
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----------------------
./src/H5B.c
./src/H5Bprivate.h
./src/H5G.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gpublic.h
./src/H5Gstab.c
Implemented H5Giterate(). However, since most functions can't
take a group ID in place of a file ID yet, there's not a whole
lot that the operator can do besides print the name or something.
./test/H5O.c
Fixed writing of four uninitialized bytes to the file as part
of an object header.
./test/istore.c
For some reason, `mpirun -np 1 istore' results in extra
arguments on the command line that istore doesn't understand.
I'm probably forgetting to call some MPI function in
main(). Albert, Kim? So I commented out the `exit(1)' for the
time being.
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----------------------
./src/*.h
Fixed indentation where indent(1) screwed up. This isn't by
any means the final say, but it's better than it was.
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5M.c
./src/H5P.c
./src/H5T.c
./src/H5Tconv.c
./src/debug.c
./test/dtypes.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Removed some atom functions from the API and made them
library-scope. Also changed some names by removing the
redundant `atom' from the name and by adding a `_' after the
`H5A'.
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----------------------
./config/freebsd2.2.1
./config/linux
Added -UH5O_DEBUG to the debug flags. Turn this on to get
lots of lines on stderr to show what objects are opened and
closed.
./src/H5C.o
./src/H5Cpublic.h
./test/dsets.c
./test/tfile.c
Split H5Cget_prop() and H5Cset_prop() into functions for each
property.
./src/H5D.c
./src/H5Dpublic.h
./src/H5Gstab.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Ocstore.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Oistore.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Ostab.c
./src/H5P.c
./src/istore.c
./test/tohdr.c
Object header functions now understand constant
vs. non-constant messages.
./src/H5F.c
./src/H5Fprivate.h
The file OID can be closed before other OID's.
./src/H5Flow.c
H5F_addr_defined() is a macro in this file.
./src/H5G.c
./src/H5Gpublic.h
./test/tstab.c
A current working group cannot be deleted.
./src/H5Gent.c
./src/H5Gpkg.h
Removed unused functionality.
./src/H5public.h
Includes <sys/types.h> for size_t.
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----------------------
./src/H5private.h
Changed HDF5_MAJOR_VERSION to 5
./src/H5Aprivate.h
./src/H5Apublic.h
Added group atoms.
./src/H5D.c
./src/H5P.c
./test/istore.c
./test/tohdr.c
./test/tstab.c
Updated for symbol table interface changes.
./src/H5F.c
./src/H5Fprivate.h
Simpler handling of special case files: empty files and files
with a single object.
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5Gshad.c (DELETED)
./src/H5Gstab.c
./src/Makefile.in
Removed shadows, simplifying code. Symbol table entries are
allowed to cache only constant meta data. Fixed naming.
./src/H5O.c
./src/H5Oprivate.h
Access to object headers is always done through a symbol table
entry instead of a file address. Added stubs for opening and
closing object headers to be used when deletion is implemented.
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----------------------
./config/depend.in
Fixed backslashes in sed script because the H5Gnode.c
dependency info was disappearing. You'll have to rerun
config.status to rebuild the Makefiles unless you use gnu
make.
./config/conclude.in
Also removes emacs backup files, TAGS, and svf backup files.
./config/linux
Grouped gcc flags and added provisions for debugging vs. production.
./html/H5.format.html
Updated messages 0x0008, 0x0009, and 0x000A.
./html/storage.html
Documentation describing storage schemes.
./src/Makefile.in
./test/Makefile.in
New source files.
./src/H5A.c
./src/H5Apublic.h
./src/H5C.c
Changed VOIDP to void* in a couple places.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5B.c
./src/H5Bprivate.h
./src/H5G.c
./src/H5Gnode.c
./src/H5Gprivate.h
./src/H5H.c
./src/H5O.c
Removed `const' from some variables because H5G_node_found() wanted
to modify it's udata argument. Removing const there caused it
to cascade to these other locations.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5B.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5H.c
./src/H5O.c
Added an extra argument to H5AC_find_f() and H5AC_protect(). This
arg gets passed to the load() method. Also added an extra
argument to the H5AC_find() macro.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
Extra argument passed to the sizeof_rkey() method.
./src/H5Fprivate.c
./src/H5Fistore.c (new)
Added indexed I/O operations.
./src/H5G.c
./src/H5Gnode.c
./src/H5Gprivate.h
Beginning to add H5G_open/close and related bug fixes.
./src/H5Oprivate.h
./src/H5Oistore.c (new)
Added the H5O_ISTORE messsage (0x0008) for indexed storage of
objects.
./src/H5private.h
Added extra braces around both sides of the FUNC_ENTER() and
FUNC_LEAVE() macros so FUNC_ENTER() can appear before
declarations or after executable statements the second case is
used by H5G_namei() to initialize output arguments to sane
values before FUNC_ENTER() might return failure.
int f ()
{
int decl1;
printf ("This happens before FUNC_ENTER()\n");
FUNC_ENTER (...);
int another_declaration;
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
Extra arguments for key encoding and decoding.
./src/H5E.c
./src/H5Epublic.h
./src/H5Fistore.c
./src/H5Oistore.c
./src/H5Oprivate.h
Indexed, chunked, sparse storage (not ready for general consumption
yet).
./src/H5V.c (new)
./src/H5Vprivate.h (new)
./test/hyperslab.c (new)
Vector, array, and hyperslab functions.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Fistore.c
./src/H5Gnode.c
./src/H5V.c
./src/H5Vprivate.h
./test/hyperslab.c
Added functionality for indexed storage.
./src/H5F.c
Fixed problems with seek optimizing. Recommend we disable it
until we can implement it in the file/address class since all
of HDF5 must be aware of it.
./src/H5O.c
Fixed comeent speling erorr :-)
./MANIFEST
Added new files.
./config/conclude.in
Added the word `Testing' to the test cases. So if a test
program is called hyperslab then the make output will contain
the line `Testing hyperslab'.
./config/linux
The default file I/O library is Posix section 2 on my linux
machine so I can do some I/O performance testing.
./src/H5C.c
./src/H5Cprivate.h
./src/H5Cpublic.h
Added ability to set size of indexed-storage B-tree.
./src/H5D.c
./src/H5E.c
./src/H5Epublic.h
./src/H5F.c
./src/H5Fprivate.h
./src/H5G.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5Gshad.c
./src/H5Gstab.c
./test/stab.c
Changed `directory' to `group' in numerous places.
./src/H5private.h
The FILELIB constant can be set on the compile command-line.
./src/istore.c NEW
Tests for indexed storage.
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./src/H5Aproto.h
./src/H5Bproto.h
./src/H5Cproto.h
./src/H5Dproto.h
./src/H5Eproto.h
./src/H5Fproto.h
./src/H5Gproto.h
./src/H5Hproto.h
./src/H5MFproto.h
./src/H5MMproto.h
./src/H5Mproto.h
./src/H5Oproto.h
./src/H5Pproto.h
./src/H5Tproto.h
./src/H5proto.h
These files were removed from the library and renamed by
changing `proto' to `public'.
./src/H5ACpublic.h NEW
./src/H5Apublic.h NEW
./src/H5Bpublic.h NEW
./src/H5Cpublic.h NEW
./src/H5Dpublic.h NEW
./src/H5Epublic.h NEW
./src/H5Fpublic.h NEW
./src/H5Gpublic.h NEW
./src/H5Hpublic.h NEW
./src/H5MFpublic.h NEW
./src/H5MMpublic.h NEW
./src/H5Mpublic.h NEW
./src/H5Opublic.h NEW
./src/H5Ppublic.h NEW
./src/H5Tpublic.h NEW
./src/H5public.h NEW
These files came from the old H5*proto.h files.
./src/Makefile
./src/Makefile.in NEW
Removed. Now generated automatically from Makefile.in by
running configure.
./src/h5oplat.h
./src/hdf5fort.h
./src/hdf5gen.h
./src/hdf5glob.h
./src/hdf5lims.h
./src/hdf5meta.h
./src/hdf5pabl.h
./src/hdf5plat.h
./src/hdf5port.h
./src/hdf5type.h
Removed. The contents of these files has moved to other
header files or source files depending on it's nature.
./src/H5.c
./src/H5A.c
./src/H5B.c
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5H.c
./src/H5M.c
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Ostab.c
./src/H5P.c
./src/H5T.c
Fixed include files. Moved some things from old headers into
these files.
./src/H5ACprivate.h
./src/H5Aprivate.h
./src/H5Bprivate.h
./src/H5Cprivate.h
./src/H5Dprivate.h
./src/H5Eprivate.h
./src/H5Fprivate.h
./src/H5Gprivate.h
./src/H5Hprivate.h
./src/H5MFprivate.h
./src/H5MMprivate.h
./src/H5Mprivate.h
./src/H5Oprivate.h
./src/H5Pprivate.h
./src/H5Tprivate.h
./src/H5private.h
./src/debug.c
Fixed include files.
./src/hdf5.h
This is now the top-level *PUBLIC* include file. It should
never appear in the library *.c files.
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