summaryrefslogtreecommitdiffstats
path: root/src/H5HF.c
Commit message (Collapse)AuthorAgeFilesLines
* [svn-r17842] Description:Quincey Koziol2009-11-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | Further refactor v2 B-tree code toward being able to pass context info down to encode/decode client callbacks: - Separate H5B2_create call to return H5B2_t structure - Make loading the v2 B-tree header pick up the client class from the ID stored in the file. Simplify some internal API calls as a result. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17785] Description:Quincey Koziol2009-10-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | Further refactor v2 B-tree code to bring it closer to modern data structure designed in the library, mainly by introducing a H5B2_t type so that the v2 B-tree could be held open, but not require the B-tree header to be protected the whole time. A few other minor tweaks as well. Also, remove unused 'dirty' flag from fractal heap header. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17749] Description:Quincey Koziol2009-10-271-8/+6
| | | | | | | | | | | | | | | | | | | | Refactor v2 B-tree code to bring it further in line with how the fractal heap code works, to make forthcoming modificaions easier. Also minor tweaks to the fractal heap code to clean it up a bit more also. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15549] Description:Quincey Koziol2008-08-281-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | Initial checkin of extensible array data structure prototype code and regression tests. Initial definitions for revised FUNC_ENTER/LEAVE and error reporting macros, which are being vetted in the extensible array code. Minor warning and formatting cleanups in other sections of code. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15510] Description:Quincey Koziol2008-08-211-5/+5
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r13984] Description:Quincey Koziol2007-07-171-85/+0
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-0/+85
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13750] Description:Quincey Koziol2007-05-141-0/+9
| | | | | | | | | Various minor cleanups found while working on the "unique, but sharable" ISOHM changes. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13367] Description:Quincey Koziol2007-02-211-4/+4
| | | | | | | | | | Allow "big" attributes to push attribute storage into "dense" form immediately, to accomodate storing the attribute. (This is only allowed in the "latest" version of the format). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13115] Description:Quincey Koziol2007-01-061-65/+37
| | | | | | | | Allow a heap to be marked for deletion while it is still open and being accessed. (Blocks further opens though). Tested on: FreeBSD/32 6.1 (duty)
* [svn-r13067] Description:Quincey Koziol2006-12-181-6/+115
| | | | | | | | | | | | | | Add [quite] limited ability to update (ie. write) data for objects in fractal heap. Limited to just updating objects in managed heap blocks (i.e. not 'tiny' or 'huge' objects) and must be updated with data of the same length as the object in the heap. Updating objects in compressed heaps does work though [as long as the data isn't 'tiny' or 'huge']. Needed for changing the data value or the name of an attribute that is stored in dense or shared storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12823] Description:Quincey Koziol2006-10-291-1/+17
| | | | | | | | | | | | | Add support for compress heap blocks in "managed" heaps. Also, fix bug when the first direct block moves between having a parent and not having one (and vice versa), which occurs when the heap moves between having a direct root block and having an indirect root block. Tested on: FreeBSD 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12699] Description:Quincey Koziol2006-10-021-61/+55
| | | | | | | | | | | Fix problems with opening a fractal heap multiple times, from different file handles. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 Mac OS/32 10.4.8 (amazon)
* [svn-r12655] Description:Quincey Koziol2006-09-111-0/+88
| | | | | | | | | | | | Add "op" routine to perform operation on heap object "in situ", to allow for faster operations on dense links during B-tree traversal & lookup. Refactor the "read" routine to use the internal version of the "op" routine, to keep the code duplication as low as possible. Tested on: Mac OS X.4/PPC (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12603] Description:Quincey Koziol2006-08-211-5/+6
| | | | | | | | | | | | | | | | | | | Add a bunch more regression tests: - Verify opening a fractal heap more than once works correctly - Check that 0 & 1-sized object insertions are handled correctly - Check that bad heap IDs are detected when attempting to read an object - Check that doubling tables with different parameter values are working correctly Add some more checks to the code to detect 0-sized object insertions and bad heap IDs for reading. Tested On: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12598] Description:Quincey Koziol2006-08-191-0/+3
| | | | | | | | | | | | | | - Migrate "direct block location" routine from H5HFman.c to H5HFdblock.c, which is a more appropriate location - Optimize performance of heap code by taking advantage of pinned indirect blocks and use them without putting a metadata cache protect/unprotect pair around them. - Other minor compiler warning cleanups and optimizations... Tested On: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12592] Description:Quincey Koziol2006-08-171-9/+33
| | | | | | | | | | | | | | | | | | | | | Several changes, all mooshed together: - Add support for "tiny" objects - which can be stored in the heap ID itself, instead of in the heap data blocks. - Flesh out support for compressed direct blocks, but comment it out until John's got some metadata cache changes in place to support it. - Add support for applying I/O pipeline filters to 'huge' objects - Refactor 'huge' object code to store information for 'huge' objects directly in the heap ID, when there are I/O pipeline filters applied to the heap (and the heap ID is large enough to hold the information) - Update h5debug tool to correctly handle 'huge' & 'tiny' objects. - Misc. other code cleanups, etc. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12575] Description:Quincey Koziol2006-08-141-3/+2
| | | | | | | | | | | | | Allow the heap ID length to be chosen at heap creation time, to allow for making heap IDs long enough to directly embed the file offset & length of 'huge' objects in the heap ID (which allows them to be retrieved directly from disk, instead of requiring them to be looked up in the B-tree that tracks 'huge' objects) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 9 (shanti)
* [svn-r12572] Description:Quincey Koziol2006-08-131-21/+3
| | | | | | | | | | Refactor new heap's header creation code to be all in the H5HFhdr.c module. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12562] Description:Quincey Koziol2006-08-101-47/+46
| | | | | | | | | | | | Initial revision to add support for "huge" objects in the heap (which are actually stored directly in the file, but are tracked with v2 B-tree that is accessed through heap header). Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS X.4 (amazon)
* [svn-r12551] Description:Quincey Koziol2006-08-071-1/+1
| | | | | | | | | | | Refactor fields in heap header to clean out information from dropped features and also group related fields together more nicely. Add fields to heap header for storing information about "huge" objects. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12550] Description:Quincey Koziol2006-08-071-33/+68
| | | | | | | | | | | Refactor fractal heap IDs to include "flag byte" as part of the ID. This byte will be used for the heap ID format version as well as flags to indicate whether the heap object is a "tiny"/normal/"huge" object (with storage mechanisms optimized for each type of object). Platforms tested: Linux/32 2.4 (chicago) Too minor to require h5committest
* [svn-r12549] Description:Quincey Koziol2006-08-071-4/+90
| | | | | | | | | | Add support for entire heap deletion. Platforms tested: FreeBSD 4.11 (sleipnir) Linux/32 2.4 (chicago) Linux/64 2.4 (mir) Mac OS X (amazon)
* [svn-r12517] Description:Quincey Koziol2006-07-311-3/+14
| | | | | | | | | | | | | | | Fix the last scattered bunch of problems with the object deletion code, which appears to be completely working now (for objects that are stored within heap blocks - standalone objects aren't implemented yet). Also, re-work the regression test to speed up some of the existing tests and add in 100-200 more combinations of tests - overall, its probably even slower than it was... :-/ Tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12452] Purpose:James Laird2006-07-051-2/+2
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12424] Purpose:Quincey Koziol2006-06-191-0/+10
| | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more new features for the fractal heap code, mostly bringing in more ability for deleting objects (which isn't completely working yet). Also, checkpoint free space manager code, which is essentially complete (although it needs some more work after the metadata cache has some additional features) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12362] Purpose:Quincey Koziol2006-05-221-4/+64
| | | | | | | | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow objects to be deleted Fix bugs in fractal heap object insertion Improve free space manager code to allow sections to be merged and shrink the container Another try at making the Windows compilers happy... Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X.4/PPC (amazon) Linux 2.4 (chicago & heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/parallel
* [svn-r12349] Purpose:Quincey Koziol2006-05-151-20/+47
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12317] Purpose:Quincey Koziol2006-04-301-54/+271
| | | | | | | | | | | | | | | | Code checkpoint Description: More progress on fractal heap, can now re-open an existing heap, although the free space algorithm still needs work. Also, use the new "pinned entry" metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 9 (shanti) Linux 2.4/64 (mir)
* [svn-r12258] Purpose:Quincey Koziol2006-04-151-24/+24
| | | | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more fractal heap support for odd allocation patterns (entries that are too large for various block sizes, etc.) Broke out fractal heap code into more source code modules. Refactored fractal heap test to make it more understandable and maintainable for the long term. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Linux 2.4/64 (mir) Solaris 2.9 (shanti)
* [svn-r12162] Purpose:Quincey Koziol2006-03-281-4/+14
| | | | | | | | | | | | Code checkpoint Description: Check in fractal heap code to add basic support for skipping direct blocks when an object is too large to fit in one. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12161] Purpose:Quincey Koziol2006-03-271-33/+13
| | | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap code at a stable point in development. It appears that adding objects to heaps and reading them back out is now working properly (as long as there are no gaps in the heap and no standalone objects are created). Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Linux 2.4 (mir) w/64-bit & FORTRAN & C++ Solaris 9 (shanti) w/64-bit
* [svn-r12125] Purpose:Quincey Koziol2006-03-211-2/+7
| | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to insert & read heaps up to 64MB in size (with my current configuration paramaters) and add initial support for iteratively walking down nested indirect blocks. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Solaris 9 (shanti) Linux 2.4 (mir) w/64-bit
* [svn-r12122] Purpose:Quincey Koziol2006-03-181-2/+69
| | | | | | | | | | | Code update Description: Add basics of routine for reading information back out of a fractal heap. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12093] Purpose:Quincey Koziol2006-03-151-0/+5
| | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap changes - mostly internal changes to better handle more direct blocks from root indirect block. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12084] Purpose:Quincey Koziol2006-03-131-7/+16
| | | | | | | | | | | | | | | | Code checkpoint Description: The fractal heap code is reasonably stable and is passing all its current tests, so checkpoint everything with CVS. Also, add "statistics" module for v2 B-trees code, which is only a stub right now. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4 (chicago)
* [svn-r12004] Purpose:Quincey Koziol2006-03-041-11/+10
| | | | | | | | | | | | | | | | | New feature & code cleanup Description: Update fractal heap to be able to insert objects into a direct block hanging off the header. Extract "octal dump" code into separate routine so that both the local heaps & fractal heaps can use it. Other code cleanups & support to get this far. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-81/+20
| | | | | | | | | | | | | | Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
* [svn-r11967] Purpose:Quincey Koziol2006-02-271-0/+271
New feature Description: Check in initial "fractal heap" code, for supporting the group redesign. Also, remove some remnants of the segmented heap/block tracker/B+tree code which I didn't find during the last pass. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4
generated by cgit v0.12 at 2024-11-01 19:01:10 (GMT)