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* [svn-r15800] Description:Quincey Koziol2008-10-071-6/+46
| | | | | | | | | | | | | | | | | | | | | | | Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15676] Description:Quincey Koziol2008-09-221-12/+12
| | | | | | | | | | | | | | | | | | | | | | | Centralize all macros for declaring "magic numbers"/signatures for objects in the file into src/H5Fprivate.h, so it's easier to know what values have already been defined, etc. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15612] Description:Quincey Koziol2008-09-111-4/+3
| | | | | | | | | | | | | | | | | | | | | Minor formatting cleanups Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15510] Description:Quincey Koziol2008-08-211-8/+8
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r14159] Description:Quincey Koziol2007-09-271-1/+1
| | | | Clarify some text in comments.
* [svn-r13926] Description:Quincey Koziol2007-06-291-43/+73
| | | | | | | | | | | | Add small interface to "wrap" a static buffer (usually on the stack), but still allow for buffers larger than the static buffer to be allocated. This can eliminate _many_ short-lived buffer allocations in situations where the buffer is a predictable size (or at least a "very likely" size). Also, some minor code cleanups, particularly in the SOHM caching code. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13223] Description:Quincey Koziol2007-01-301-7/+7
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13115] Description:Quincey Koziol2007-01-061-0/+2
| | | | | | | | Allow a heap to be marked for deletion while it is still open and being accessed. (Blocks further opens though). Tested on: FreeBSD/32 6.1 (duty)
* [svn-r13016] Description:Quincey Koziol2006-12-041-2/+2
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-041-3/+3
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r12823] Description:Quincey Koziol2006-10-291-17/+184
| | | | | | | | | | | | | Add support for compress heap blocks in "managed" heaps. Also, fix bug when the first direct block moves between having a parent and not having one (and vice versa), which occurs when the heap moves between having a direct root block and having an indirect root block. Tested on: FreeBSD 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12774] Modified flush code in the metadata cache to allow it toJohn Mainzer2006-10-181-6/+23
| | | | | | | | | | | | | | | | | handle flush callbacks which can dirty other entries, and resize and/or rename the target entry. This feature is needed by the fractal heap code. Also added associated test code. H5Commit tested. Test failed on heping, but the error appears to be a syntax error in an un-related file. Tests on copper & sol passed, along with tests on phoenix.
* [svn-r12768] Description:Quincey Koziol2006-10-161-6/+6
| | | | | | | | | | Add 'initval' parameter to "lookup3" checksum routine (and implicitly to the metadata checksum routine), to allow chaining several checksums together easily (which isn't used by these modules, but will be used in my next checkin) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12733] Description:Quincey Koziol2006-10-091-1/+1
| | | | | | | | | | Use calloc() instead of malloc(), in order to fail a bit more gracefully on errors. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-1.6-compat
* [svn-r12702] Description:Quincey Koziol2006-10-021-0/+21
| | | | | | | | | | | | | | | | | Add test to fractal heaps to exercise issues with opening the same heap through two different file handles. Fix issues with file handle contexts in metadata cache callbacks for heap components. Fix bug in file close handling where cached information was being invalidated even when another file handle was open to the file. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/64 2.4 (mir) w/1.6 compat Linux/32 2.4 (heping) w/FORTRAN & C++ Mac OSX/32 10.4.8 (amazon)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12614] Description:Quincey Koziol2006-08-221-12/+12
| | | | | | | | Various minor reformatting & code cleanups. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12612] Description:Quincey Koziol2006-08-221-6/+6
| | | | | | | | | | Provide more abstract internal routine for computing checksums on metadata in a file. This will allow a unified policy on which algorithm to choose and under what criteria (length probably) to be more easily maintained. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12611] Description:Quincey Koziol2006-08-221-27/+0
| | | | | | | | Remove unused flag byte from fractal heap metadata on disk. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12610] Description:Quincey Koziol2006-08-221-409/+462
| | | | | | | | | | | | | | Add support for checksumming fractal heaps. This is always enabled for the heap header and indirect blocks (as they are "pure" metadata) and is optional for direct blocks, since they may be used for "raw" data. Also, rearrange direct block routines in H5HFcache.c to be in a more sensible location in the file. (probably should have been a separate checkin, since the diffs are mostly useless for this checkin... *sigh*) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12598] Description:Quincey Koziol2006-08-191-0/+16
| | | | | | | | | | | | | | - Migrate "direct block location" routine from H5HFman.c to H5HFdblock.c, which is a more appropriate location - Optimize performance of heap code by taking advantage of pinned indirect blocks and use them without putting a metadata cache protect/unprotect pair around them. - Other minor compiler warning cleanups and optimizations... Tested On: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12592] Description:Quincey Koziol2006-08-171-32/+207
| | | | | | | | | | | | | | | | | | | | | Several changes, all mooshed together: - Add support for "tiny" objects - which can be stored in the heap ID itself, instead of in the heap data blocks. - Flesh out support for compressed direct blocks, but comment it out until John's got some metadata cache changes in place to support it. - Add support for applying I/O pipeline filters to 'huge' objects - Refactor 'huge' object code to store information for 'huge' objects directly in the heap ID, when there are I/O pipeline filters applied to the heap (and the heap ID is large enough to hold the information) - Update h5debug tool to correctly handle 'huge' & 'tiny' objects. - Misc. other code cleanups, etc. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12575] Description:Quincey Koziol2006-08-141-0/+6
| | | | | | | | | | | | | Allow the heap ID length to be chosen at heap creation time, to allow for making heap IDs long enough to directly embed the file offset & length of 'huge' objects in the heap ID (which allows them to be retrieved directly from disk, instead of requiring them to be looked up in the B-tree that tracks 'huge' objects) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 9 (shanti)
* [svn-r12562] Description:Quincey Koziol2006-08-101-2/+2
| | | | | | | | | | | | Initial revision to add support for "huge" objects in the heap (which are actually stored directly in the file, but are tracked with v2 B-tree that is accessed through heap header). Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS X.4 (amazon)
* [svn-r12552] Description:Quincey Koziol2006-08-071-18/+18
| | | | | | | | | | | More tweaks on fractal heap statistics, to better separate information about managed objects from information about "huge" objects. Also, clean up some compiler warnings, etc. on 64-bit platforms & Windows. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12551] Description:Quincey Koziol2006-08-071-30/+28
| | | | | | | | | | | Refactor fields in heap header to clean out information from dropped features and also group related fields together more nicely. Add fields to heap header for storing information about "huge" objects. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12549] Description:Quincey Koziol2006-08-071-0/+3
| | | | | | | | | | Add support for entire heap deletion. Platforms tested: FreeBSD 4.11 (sleipnir) Linux/32 2.4 (chicago) Linux/64 2.4 (mir) Mac OS X (amazon)
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-2/+2
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12424] Purpose:Quincey Koziol2006-06-191-12/+33
| | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more new features for the fractal heap code, mostly bringing in more ability for deleting objects (which isn't completely working yet). Also, checkpoint free space manager code, which is essentially complete (although it needs some more work after the metadata cache has some additional features) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12362] Purpose:Quincey Koziol2006-05-221-1/+2
| | | | | | | | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow objects to be deleted Fix bugs in fractal heap object insertion Improve free space manager code to allow sections to be merged and shrink the container Another try at making the Windows compilers happy... Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X.4/PPC (amazon) Linux 2.4 (chicago & heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/parallel
* [svn-r12349] Purpose:Quincey Koziol2006-05-151-100/+18
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12317] Purpose:Quincey Koziol2006-04-301-257/+105
| | | | | | | | | | | | | | | | Code checkpoint Description: More progress on fractal heap, can now re-open an existing heap, although the free space algorithm still needs work. Also, use the new "pinned entry" metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 9 (shanti) Linux 2.4/64 (mir)
* [svn-r12258] Purpose:Quincey Koziol2006-04-151-57/+71
| | | | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more fractal heap support for odd allocation patterns (entries that are too large for various block sizes, etc.) Broke out fractal heap code into more source code modules. Refactored fractal heap test to make it more understandable and maintainable for the long term. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Linux 2.4/64 (mir) Solaris 2.9 (shanti)
* [svn-r12162] Purpose:Quincey Koziol2006-03-281-6/+1
| | | | | | | | | | | | Code checkpoint Description: Check in fractal heap code to add basic support for skipping direct blocks when an object is too large to fit in one. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12161] Purpose:Quincey Koziol2006-03-271-168/+314
| | | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap code at a stable point in development. It appears that adding objects to heaps and reading them back out is now working properly (as long as there are no gaps in the heap and no standalone objects are created). Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Linux 2.4 (mir) w/64-bit & FORTRAN & C++ Solaris 9 (shanti) w/64-bit
* [svn-r12125] Purpose:Quincey Koziol2006-03-211-65/+47
| | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to insert & read heaps up to 64MB in size (with my current configuration paramaters) and add initial support for iteratively walking down nested indirect blocks. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Solaris 9 (shanti) Linux 2.4 (mir) w/64-bit
* [svn-r12122] Purpose:Quincey Koziol2006-03-181-1/+1
| | | | | | | | | | | Code update Description: Add basics of routine for reading information back out of a fractal heap. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12093] Purpose:Quincey Koziol2006-03-151-40/+89
| | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap changes - mostly internal changes to better handle more direct blocks from root indirect block. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12084] Purpose:Quincey Koziol2006-03-131-47/+453
| | | | | | | | | | | | | | | | Code checkpoint Description: The fractal heap code is reasonably stable and is passing all its current tests, so checkpoint everything with CVS. Also, add "statistics" module for v2 B-trees code, which is only a stub right now. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4 (chicago)
* [svn-r12004] Purpose:Quincey Koziol2006-03-041-23/+534
| | | | | | | | | | | | | | | | | New feature & code cleanup Description: Update fractal heap to be able to insert objects into a direct block hanging off the header. Extract "octal dump" code into separate routine so that both the local heaps & fractal heaps can use it. Other code cleanups & support to get this far. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-7/+20
| | | | | | | | | | | | | | Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
* [svn-r11967] Purpose:Quincey Koziol2006-02-271-0/+364
New feature Description: Check in initial "fractal heap" code, for supporting the group redesign. Also, remove some remnants of the segmented heap/block tracker/B+tree code which I didn't find during the last pass. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4
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