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* [svn-r15232] Description:Quincey Koziol2008-06-181-1/+1
| | | | | | | | | | | | | | | | | | Bring back revisions 14700:14800 from the trunk Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15221] Description:Quincey Koziol2008-06-161-1/+1
| | | | | | | | | | | | | | | | | | Bring changes from trunk from the time the branch was created (r14280) up to the 1.8.0 release (r14525) back into the metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14083] Description:Quincey Koziol2007-08-141-0/+1
| | | | | | | | | | Correct problem with fractal heap's free space size usage gathering routine, which was "poisoning the cache" by loading an incorrectly initialized piece of metadata from the file. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 6.2 (amazon)
* [svn-r13984] Description:Quincey Koziol2007-07-171-2/+2
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-0/+2
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13367] Description:Quincey Koziol2007-02-211-0/+2
| | | | | | | | | | Allow "big" attributes to push attribute storage into "dense" form immediately, to accomodate storing the attribute. (This is only allowed in the "latest" version of the format). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13115] Description:Quincey Koziol2007-01-061-2/+4
| | | | | | | | Allow a heap to be marked for deletion while it is still open and being accessed. (Blocks further opens though). Tested on: FreeBSD/32 6.1 (duty)
* [svn-r13067] Description:Quincey Koziol2006-12-181-1/+8
| | | | | | | | | | | | | | Add [quite] limited ability to update (ie. write) data for objects in fractal heap. Limited to just updating objects in managed heap blocks (i.e. not 'tiny' or 'huge' objects) and must be updated with data of the same length as the object in the heap. Updating objects in compressed heaps does work though [as long as the data isn't 'tiny' or 'huge']. Needed for changing the data value or the name of an attribute that is stored in dense or shared storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12823] Description:Quincey Koziol2006-10-291-13/+9
| | | | | | | | | | | | | Add support for compress heap blocks in "managed" heaps. Also, fix bug when the first direct block moves between having a parent and not having one (and vice versa), which occurs when the heap moves between having a direct root block and having an indirect root block. Tested on: FreeBSD 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12706] Description:Quincey Koziol2006-10-021-2/+1
| | | | | | | | | Clean up some of the warnings on 64-bit Linux... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) Too minor to require h5committest
* [svn-r12699] Description:Quincey Koziol2006-10-021-2/+5
| | | | | | | | | | | Fix problems with opening a fractal heap multiple times, from different file handles. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 Mac OS/32 10.4.8 (amazon)
* [svn-r12655] Description:Quincey Koziol2006-09-111-0/+9
| | | | | | | | | | | | Add "op" routine to perform operation on heap object "in situ", to allow for faster operations on dense links during B-tree traversal & lookup. Refactor the "read" routine to use the internal version of the "op" routine, to keep the code duplication as low as possible. Tested on: Mac OS X.4/PPC (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12614] Description:Quincey Koziol2006-08-221-2/+2
| | | | | | | | Various minor reformatting & code cleanups. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12611] Description:Quincey Koziol2006-08-221-1/+0
| | | | | | | | Remove unused flag byte from fractal heap metadata on disk. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12610] Description:Quincey Koziol2006-08-221-21/+24
| | | | | | | | | | | | | | Add support for checksumming fractal heaps. This is always enabled for the heap header and indirect blocks (as they are "pure" metadata) and is optional for direct blocks, since they may be used for "raw" data. Also, rearrange direct block routines in H5HFcache.c to be in a more sensible location in the file. (probably should have been a separate checkin, since the diffs are mostly useless for this checkin... *sigh*) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12598] Description:Quincey Koziol2006-08-191-7/+15
| | | | | | | | | | | | | | - Migrate "direct block location" routine from H5HFman.c to H5HFdblock.c, which is a more appropriate location - Optimize performance of heap code by taking advantage of pinned indirect blocks and use them without putting a metadata cache protect/unprotect pair around them. - Other minor compiler warning cleanups and optimizations... Tested On: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12592] Description:Quincey Koziol2006-08-171-23/+107
| | | | | | | | | | | | | | | | | | | | | Several changes, all mooshed together: - Add support for "tiny" objects - which can be stored in the heap ID itself, instead of in the heap data blocks. - Flesh out support for compressed direct blocks, but comment it out until John's got some metadata cache changes in place to support it. - Add support for applying I/O pipeline filters to 'huge' objects - Refactor 'huge' object code to store information for 'huge' objects directly in the heap ID, when there are I/O pipeline filters applied to the heap (and the heap ID is large enough to hold the information) - Update h5debug tool to correctly handle 'huge' & 'tiny' objects. - Misc. other code cleanups, etc. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12575] Description:Quincey Koziol2006-08-141-8/+6
| | | | | | | | | | | | | Allow the heap ID length to be chosen at heap creation time, to allow for making heap IDs long enough to directly embed the file offset & length of 'huge' objects in the heap ID (which allows them to be retrieved directly from disk, instead of requiring them to be looked up in the B-tree that tracks 'huge' objects) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 9 (shanti)
* [svn-r12572] Description:Quincey Koziol2006-08-131-1/+1
| | | | | | | | | | Refactor new heap's header creation code to be all in the H5HFhdr.c module. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12562] Description:Quincey Koziol2006-08-101-14/+41
| | | | | | | | | | | | Initial revision to add support for "huge" objects in the heap (which are actually stored directly in the file, but are tracked with v2 B-tree that is accessed through heap header). Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS X.4 (amazon)
* [svn-r12552] Description:Quincey Koziol2006-08-071-25/+26
| | | | | | | | | | | More tweaks on fractal heap statistics, to better separate information about managed objects from information about "huge" objects. Also, clean up some compiler warnings, etc. on 64-bit platforms & Windows. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12551] Description:Quincey Koziol2006-08-071-8/+23
| | | | | | | | | | | Refactor fields in heap header to clean out information from dropped features and also group related fields together more nicely. Add fields to heap header for storing information about "huge" objects. Platforms tested: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago)
* [svn-r12550] Description:Quincey Koziol2006-08-071-4/+25
| | | | | | | | | | | Refactor fractal heap IDs to include "flag byte" as part of the ID. This byte will be used for the heap ID format version as well as flags to indicate whether the heap object is a "tiny"/normal/"huge" object (with storage mechanisms optimized for each type of object). Platforms tested: Linux/32 2.4 (chicago) Too minor to require h5committest
* [svn-r12549] Description:Quincey Koziol2006-08-071-1/+6
| | | | | | | | | | Add support for entire heap deletion. Platforms tested: FreeBSD 4.11 (sleipnir) Linux/32 2.4 (chicago) Linux/64 2.4 (mir) Mac OS X (amazon)
* [svn-r12525] Description:Quincey Koziol2006-08-021-3/+2
| | | | | | | | | | | Refactored free space manager to use metadata cache for serialized free space sections. This speeds up the fractal heap test considerably... Tested: FreeBSD 4.11 (sleipnir) Linux 2.4/32 (chicago) Linux 2.4/64 (mir) Mac OS X (amazon)
* [svn-r12517] Description:Quincey Koziol2006-07-311-4/+5
| | | | | | | | | | | | | | | Fix the last scattered bunch of problems with the object deletion code, which appears to be completely working now (for objects that are stored within heap blocks - standalone objects aren't implemented yet). Also, re-work the regression test to speed up some of the existing tests and add in 100-200 more combinations of tests - overall, its probably even slower than it was... :-/ Tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12495] Description:Quincey Koziol2006-07-251-3/+4
| | | | | | | | | | Checkpoint further work on object deletion code for fractal heaps. I believe everything is finally working for this sub-task. More regression tests soon, but I don't foresee any problems. Machines: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12491] Description:Quincey Koziol2006-07-221-32/+55
| | | | | | | | | | Refactored object deletion code for fractal heap to fix scaling problems. Passing all previous tests again now. Tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12449] Purpose:Quincey Koziol2006-07-011-1/+3
| | | | | | | | | | | | | Code checkpoint Description: Revise fractal heap code to support deletions in up to 2nd level deep indirect blocks. Needs some revisions to support deeper indirect blocks... Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12424] Purpose:Quincey Koziol2006-06-191-39/+62
| | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more new features for the fractal heap code, mostly bringing in more ability for deleting objects (which isn't completely working yet). Also, checkpoint free space manager code, which is essentially complete (although it needs some more work after the metadata cache has some additional features) Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) h5committest
* [svn-r12362] Purpose:Quincey Koziol2006-05-221-9/+41
| | | | | | | | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow objects to be deleted Fix bugs in fractal heap object insertion Improve free space manager code to allow sections to be merged and shrink the container Another try at making the Windows compilers happy... Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X.4/PPC (amazon) Linux 2.4 (chicago & heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/parallel
* [svn-r12349] Purpose:Quincey Koziol2006-05-151-119/+70
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12317] Purpose:Quincey Koziol2006-04-301-100/+163
| | | | | | | | | | | | | | | | Code checkpoint Description: More progress on fractal heap, can now re-open an existing heap, although the free space algorithm still needs work. Also, use the new "pinned entry" metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 9 (shanti) Linux 2.4/64 (mir)
* [svn-r12258] Purpose:Quincey Koziol2006-04-151-11/+75
| | | | | | | | | | | | | | | | | | | Code checkpoint Description: Add in more fractal heap support for odd allocation patterns (entries that are too large for various block sizes, etc.) Broke out fractal heap code into more source code modules. Refactored fractal heap test to make it more understandable and maintainable for the long term. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Linux 2.4/64 (mir) Solaris 2.9 (shanti)
* [svn-r12162] Purpose:Quincey Koziol2006-03-281-11/+5
| | | | | | | | | | | | Code checkpoint Description: Check in fractal heap code to add basic support for skipping direct blocks when an object is too large to fit in one. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago)
* [svn-r12161] Purpose:Quincey Koziol2006-03-271-94/+104
| | | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap code at a stable point in development. It appears that adding objects to heaps and reading them back out is now working properly (as long as there are no gaps in the heap and no standalone objects are created). Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Linux 2.4 (mir) w/64-bit & FORTRAN & C++ Solaris 9 (shanti) w/64-bit
* [svn-r12125] Purpose:Quincey Koziol2006-03-211-45/+35
| | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to insert & read heaps up to 64MB in size (with my current configuration paramaters) and add initial support for iteratively walking down nested indirect blocks. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Solaris 9 (shanti) Linux 2.4 (mir) w/64-bit
* [svn-r12122] Purpose:Quincey Koziol2006-03-181-0/+2
| | | | | | | | | | | Code update Description: Add basics of routine for reading information back out of a fractal heap. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12093] Purpose:Quincey Koziol2006-03-151-7/+28
| | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap changes - mostly internal changes to better handle more direct blocks from root indirect block. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r12084] Purpose:Quincey Koziol2006-03-131-19/+138
| | | | | | | | | | | | | | | | Code checkpoint Description: The fractal heap code is reasonably stable and is passing all its current tests, so checkpoint everything with CVS. Also, add "statistics" module for v2 B-trees code, which is only a stub right now. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4 (chicago)
* [svn-r12082] Purpose:Quincey Koziol2006-03-121-1/+1
| | | | | | | | | | | Bug fix Description: Clean up a few code mis-matches that crept in during the last checkin. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5commitest
* [svn-r12007] Purpose:Quincey Koziol2006-03-051-1/+1
| | | | | | | | | | Bug fix Description: Fix typo in H5HF_dblock_debug() prototype Platforms tested: FreeBSD 4.11 (sleipnir)
* [svn-r12004] Purpose:Quincey Koziol2006-03-041-18/+127
| | | | | | | | | | | | | | | | | New feature & code cleanup Description: Update fractal heap to be able to insert objects into a direct block hanging off the header. Extract "octal dump" code into separate routine so that both the local heaps & fractal heaps can use it. Other code cleanups & support to get this far. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-7/+13
| | | | | | | | | | | | | | Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
* [svn-r11967] Purpose:Quincey Koziol2006-02-271-0/+155
New feature Description: Check in initial "fractal heap" code, for supporting the group redesign. Also, remove some remnants of the segmented heap/block tracker/B+tree code which I didn't find during the last pass. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4
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