| Commit message (Collapse) | Author | Age | Files | Lines |
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* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
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* Update format source to clang 13
* More format changes
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* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Finish refactoring v2 B-trees so that they can have client callback
context provided to the encode/decode callbacks.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Remove old shim H5B2 routines from refactoring, rename new routines to
old routine names and switch all users of the H5B2 interface back to the old
routine names now that the switch to using the more current open -> <operation>
-> pattern is used for all the H5B2 code. This is the final change before
adding a context to the H5B2 client encode/decode callbacks.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Switch a bunch of misc. places in interfaces that were already
converted to use the refactored v2 B-tree routines to use the refactored v2
B-tree routines.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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New fortran wrappers added.
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tests:
Add 2 more parameters to H5HF_man_iblock_size() (parent iblock and parent entry)
for passing onto H5HF_iblock_man_iblock_protect().
This bug was there before but was revealed now by exercising the recursive part of the code from the new
"h5stat_newgrat.h5".
Tested on kagiso, smirom and linew with --disable-production.
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#1072 in H5HF_man_iblock_size().
2. H5HFstat.c: Since H5HF_space_size() zeroed out fs_size, add "meta_size" to store
free-space size before adding to "heap_size".
3. h5stat_gentest.c: increase # of groups to get "h5stat_newgrat.h5" that contains
indirect block entries in fractal heap.
This is for testing the recursive part of the code in H5HF_man_iblock_size().
4. h5stat_newgrat.h5: the new .h5 file generated by h5stat_gentest.c.
5. h5stat_newgrat.ddl: expected output from new "h5stat_newgrat.h5".
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Refactor H5HF_size() size statistics code for fractal heap to conform to
how the rest of the fractal heap routines work.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.10 (amazon)
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Correct problem with fractal heap's free space size usage gathering
routine, which was "poisoning the cache" by loading an incorrectly initialized
piece of metadata from the file.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 6.2 (amazon)
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Various code cleanups and refactor recent changes for h5stat to fit
into the existing library data structures better.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Several changes, all mooshed together:
- Add support for "tiny" objects - which can be stored in the heap
ID itself, instead of in the heap data blocks.
- Flesh out support for compressed direct blocks, but comment it
out until John's got some metadata cache changes in place to
support it.
- Add support for applying I/O pipeline filters to 'huge' objects
- Refactor 'huge' object code to store information for 'huge' objects
directly in the heap ID, when there are I/O pipeline filters
applied to the heap (and the heap ID is large enough to hold the
information)
- Update h5debug tool to correctly handle 'huge' & 'tiny' objects.
- Misc. other code cleanups, etc.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/64 2.4 (mir)
Solaris/64 2.9 (shanti)
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More tweaks on fractal heap statistics, to better separate information
about managed objects from information about "huge" objects.
Also, clean up some compiler warnings, etc. on 64-bit platforms & Windows.
Platforms tested:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago)
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Code checkpoint
Description:
Add in more new features for the fractal heap code, mostly bringing in
more ability for deleting objects (which isn't completely working yet).
Also, checkpoint free space manager code, which is essentially complete
(although it needs some more work after the metadata cache has some additional
features)
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (chicago)
h5committest
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Code checkpoint
Description:
More progress on fractal heap, can now re-open an existing heap, although
the free space algorithm still needs work.
Also, use the new "pinned entry" metadata cache code.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (heping)
Solaris 9 (shanti)
Linux 2.4/64 (mir)
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Code checkpoint
Description:
Checkpoint fractal heap code at a stable point in development. It appears
that adding objects to heaps and reading them back out is now working
properly (as long as there are no gaps in the heap and no standalone objects
are created).
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (chicago)
Linux 2.4 (mir) w/64-bit & FORTRAN & C++
Solaris 9 (shanti) w/64-bit
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Code checkpoint
Description:
Checkpoint fractal heap changes - mostly internal changes to better
handle more direct blocks from root indirect block.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (chicago)
Mac OS X (amazon)
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Code checkpoint
Description:
The fractal heap code is reasonably stable and is passing all its
current tests, so checkpoint everything with CVS.
Also, add "statistics" module for v2 B-trees code, which is only a
stub right now.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX (amazon)
Linux 2.4 (chicago)
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