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* Convert hbool_t --> bool in src (#3496)Dana Robinson2023-09-051-2/+2
| | | | | | | | | | | * hbool_t --> bool in src * Does not remove TRUE/FALSE * Public header files are unchanged * Public API calls are unchanged * TRUE/FALSE --> true/false in src * Add deprecation notice for hbool_t
* Made HGOTO_ERROR a do-while loop (#3308)Sean McBride2023-08-021-28/+28
| | | | | * Made HGOTO_ERROR a do-while loop
* Another round of fixing -Wextra-semi-stmt warnings (#3264)Sean McBride2023-07-241-8/+8
| | | Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed more warnings about extra semicolons (#3249)Sean McBride2023-07-181-1/+1
| | | | | | | * Require semi-colon after H5_CHECK_OVERFLOW calls Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-5/+5
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-33/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-281-37/+37
| | | | | * Change HDassert to assert * Fix bin/make_err
* Remove dead code behind #ifdef OLD_WAY (#3163)Dana Robinson2023-06-211-15/+1
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* Many clang -Wextra-semi-stmt fixes (#2537)Sean McBride2023-06-161-2/+2
| | | | | * Adds semicolons to function-like macros * Adds a do..while(0) loop to some macros * Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
* Convert H5F haddr_t macros to H5 (#3039)Dana Robinson2023-06-051-7/+7
| | | | | | | | | | | | | | | | | | | | | | Several macros for handling haddr_t values exist in H5Fprivate.h and have H5F prefixes, even though they have nothing to do with a particular file (e.g., H5F_addr_lt()). These macros have been moved to H5private.h and renamed to have an H5 prefix. Affected macros: H5F_addr_overflow H5F_addr_defined H5F_addr_eq H5F_addr_ne H5F_addr_lt H5F_addr_le H5F_addr_gt H5F_addr_ge H5F_addr_cmp H5F_addr_overlap H5F_addr_pow2 was unused and removed instead of converted.
* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-7/+7
| | | | | * Update format source to clang 13 * More format changes
* Removes the STATIC flavor of FUNC_ENTER macros (#1622)Dana Robinson2022-04-081-2/+2
| | | | | * Removes the STATIC flavor of FUNC_ENTER macros
* Simplify function enter macros for performance benefits (#1024)David Young2021-11-081-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Take a stab at using constructors to initialize instead of function-entry macros. This is a work in progress. It's good enough to run `many_dsets`. * Committing clang-format changes * Add the `many_dsets` benchmark and some scripts I used on jelly for setting up the build/test environment and for recording/flame-graphing profiles. * Committing clang-format changes * Change my Makefile and environment script to work both on jelly and on mayll (and probably on Summit). * Disable clang-format "fix." * Replace the `if (!H5_TERM_GLOBAL)` test in each FUNC_ENTER_ macro with `if (true)`. * Fix bad grammar in a comment. * Instead of labeling the H5*__init_package routines constructors, fold each into an initialization routine, H5*_init(), and call each of the H5*_init() routines. Call most of the H5*_init() routines from H5_init_library() in an explicit order that I found out earlier by instrumenting each __init_package routine and running the library tests. Roll H5FD*__init_package routines into H5FD*_init() routines. This change ends just-in-time initialization of package dependencies by package initializers. Don't track in per-package variables (H5_PKG_INIT_VAR) whether each package has been initialized. Instead, track in a single library variable whether the whole library is initialized or not. Drive the initialization of packages by H5_init_library() with a table of initializer routines. Also drive the termination of packages by H5_term_library() with a table. Perform initialization as needed from FUNC_ENTER_API_INIT(err). This basically restores the old behavior of that macro. Delete a bunch of #definitions in H5private.h that have fallen out of use with these changes. * Committing clang-format changes * Undo the bad auto-formatting that appears to have occurred in spite of my disabling it. Bracket some code in /* clang-format off */ /* clang-format on */ to prevent a recurrence. * Remove a diagnostic abort(). * Fix a logic error: print a comma between every package terminator run, and don't print an initial comma. * Complete the changes I started in H5_term_library() that undo the bad auto-formatting. Stop tracking whether package "tops" were initialized in per-package variables H5*_top_package_initialize_s. H5_term_library() takes care of that for them. Remove H5R_top_term_package() and H5R_term_package(), they don't do anything. * Committing clang-format changes * NFCI. Simplify macro text: replace `if (true) {` with `{`. * Fix formatting and suppress clang-format on a longer range. * Quiet some unused label, unused variable complaints that cropped up after I simplified the FUNC_ENTER_ macros for the sake of performance. * Committing clang-format changes * Delete some programs and scripts that don't belong in the pull request. * Use the right function-entry macro. * Use a sensible format and disable auto-formatting. * Stop calling do-nothing initializer H5FS_init(). Delete it. * Document what changes to make if the default VFD changes. * While I am here, change an `await_prior` flag on the terminator table to `true` to match the previous, non-table-driven code that was here. Found the oversight making the following changes: NFCI: insert an empty line and copy over slightly-edited comments from the previous version, where those comments still correctly explained how library termination operated. * NFCI: lower a staircase. * Replace every occurrence of FUNC_ENTER_NOAPI_INIT(...) with H5_PUSH_FUNC since that is all that that macro does any more. Quiet a bunch of new warnings by changing FUNC_ENTER_NOAPI(...) to FUNC_ENTER_NOAPI_NOERR and removing disused `done:` labels. * NFCI: add curly braces around a multiline statement. * Quiet a signed/unsigned comparison warning. * Add some documentation about library initialization and shutdown. * Make sure that the library is initialized, or else that initialization is already underway, before performing any VFD's initialization. * Committing clang-format changes * Committing clang-format changes * Reduce differences from `develop` branch. * Always initialize `tot_init`. * Committing clang-format changes * Fix typo: H5SL_init initializes skip lists, not VOL. * Remove H5_TERM_GLOBAL test in H5T_init. H5T_init was unusual in that it tested H5_TERM_GLOBAL and exited early if it was set. No other module initializers did that, and I cannot find any reason that should be necessary. Tests still pass when I remove it, so away it goes. * Use HD prefix. * Add function header comments. * Drop the intermediate variable, it's only used once. * Extract subroutine `H5FDperform_init(hid_t (*init)(void))` that initializes the library, if necessary, before calling its VFD-initializer argument. Use H5FDperform_init in the definition of the symbols H5FD_<vfd> (e.g., H5FD_SEC2), which may be evaluated before the library is initialized, like so: ``` ``` I implement H5FDperform_init in its own source file, H5FDperform.c, and exclude that file from trace processing because the `bin/trace` cannot deal with the function-pointer type. * Straggler from last: add new source file src/H5FDperform.c. * Committing clang-format changes * Add a missing file to the MANIFEST. * Switch to FUNC_ENTER_API_NOINIT in H5FDperform_init() and hbool_t in H5_term_library(). Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* develop revert source to clang-format version 11 (#293)Allen Byrne2021-01-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-1/+1
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Clang-format of source filesAllen Byrne2020-09-301-173/+157
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* Merge remote-tracking branch 'origin/develop' into remove_unneeded_taggingQuincey Koziol2020-08-141-2/+2
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| * Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-2/+2
| | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* | Remove redundant calls to set the metadata cache tagQuincey Koziol2020-08-081-2/+2
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* Trim trailing whitespaceQuincey Koziol2020-04-201-2/+2
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* Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-3/+3
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* HDFFV-10635: Some minor changes to the test case and the comments in the ↵Songyu Lu2018-12-061-2/+3
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* HDFFV-10635: Allowing to write the same variable-length element more than once.Songyu Lu2018-11-301-1/+7
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* Normalization with vol_integration (misc internal and datatype)Dana Robinson2018-09-201-37/+37
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-62/+44
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Code style and warning cleanups, from revise_chunks branch.Quincey Koziol2016-11-061-1/+1
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* [svn-r30017] Description:Quincey Koziol2016-06-061-1/+1
| | | | | | | | | Bring warning cleanusp in r29990, 29993, 29997, 29999, 30004 from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production. (h5committest forthcoming)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-12/+12
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r28972] Removed option to clear file buffers from autotools, CMake, and ↵Dana Robinson2016-01-261-10/+6
| | | | | | | | | | | | library. Buffers that will be written to disk will now always be cleared since not doing this has huge security implications. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1 serial autotools parallel autotools (MPICH 3.1.4) serial CMake
* [svn-r27835] Description:Quincey Koziol2015-09-211-5/+8
|\ | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27768] Description:Quincey Koziol2015-09-141-5/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27256] Merge revisions 27102 through 27255 from trunk to vds branch.Neil Fortner2015-06-191-8/+11
|\ \ | |/ | | | | Tested: ummon
| * [svn-r27237] Description:Quincey Koziol2015-06-181-7/+10
| | | | | | | | | | | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* | [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.Neil Fortner2015-04-101-2/+2
|\ \ | |/ | | | | Tested: ummon
| * [svn-r26387] warning fixes from Feb27.Mohamad Chaarawi2015-03-061-2/+2
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* | [svn-r26261] Commit working but incomplete prototype. Does not perform I/O.Neil Fortner2015-02-201-0/+44
|/ | | | Tested: ummon
* [svn-r23713] Description:Quincey Koziol2013-05-211-4/+4
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r22646] Description:Quincey Koziol2012-08-081-1/+1
| | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r21919] Description:Quincey Koziol2012-02-091-9/+9
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21133] Description:Quincey Koziol2011-07-201-124/+23
| | | | | | | | | | | | | | | | | More code cleanups to reduce coupling between packages that use the H5F internal routines, but really aren't part of the H5F "package". Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode
* [svn-r21126] Description:Quincey Koziol2011-07-191-3/+3
| | | | | | | | | | | | | Clean up some compiler warnings, but mainly an interim checkin on the path of reducing code coupling in the library by removing most of the places which were accessing H5F package definitions. Tested on: Mac OS X/32 10.6.8 (amazon) w/debug FreeBSD/32 8.2 (loyalty) w/debug FreeBSD/64 8.2 (freedom) w/debug Linux/64 2.6 (heiwa) w/debug Linux/64 2.6 (ember) w/parallel
* [svn-r19114] Description:Quincey Koziol2010-07-201-1/+1
| | | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (too simple to require h5committest)
* [svn-r19005] Purpose:Mike McGreevy2010-06-151-10/+10
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r18837] Description:Quincey Koziol2010-05-181-46/+51
| | | | | | | | | | | | | | | | | | | | | | Remove the size parameter from H5[A]C_unprotect() and the H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using H5[A]C_resize_entry appropriately. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18716] Description:Quincey Koziol2010-05-051-8/+47
| | | | | | | | | | | | | | | | | | | | | | Bring r18715 from metadata journaling merging branch to trunk: Changes to further align trunk with state of metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18702] Description:Quincey Koziol2010-05-051-4/+4
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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