| Commit message (Collapse) | Author | Age | Files | Lines |
|---|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
Changed H5F_block_read/write() to take a file transfer
property list instead of just a parallel I/O mode. This will
allow us to pass additional parameters to the I/O functions
without having so many arguments to worry about.
This fixes a bug I introduced last Friday for parallel HDF5
./src/H5B.c
Fixed decoding of B-tree keys when iterating through the
leaves of the B-tree. This fixes a bug for applications that are
adding new entries to groups and also listing the groups.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./config/commence.in
./config/conclude.in
./test/Makefile.in
./tools/Makefile.in
Fixed so private libraries are not installed publicly.
The installation directories `bin', `include', and `lib' are
created mode 755.
./src/H5.c
./src/H5A.c
./src/H5F.c
./src/H5Fcore.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Vprivate.h
./src/H5Z.c
./src/H5detect.c
./src/H5private.h
./test/chunk.c
./test/dsets.c
./test/dtypes.c
./test/h5test.c
./test/overhead.c
./test/ragged.c
./test/tattr.c
./tools/h5dump.c
./tools/h5findshd.c
./tools/h5ls.c
Changed `__unused__' to `UNUSED' to fix a conflict with GNU
header files.
./src/H5Tpkg.h
./test/h5test.h
Removed __unused__ from forward function declarations.
./src/H5P.c
Removed a comment about restrictions for the type conversion
temporary buffers. Thanks to Quincey, the comment no longer
applied.
./src/H5T.c
Relaxed the H5Tpack() a little so it would pack compound data
structures that had non-transient atomic members.
./tools/h5ls.c
Added a `-g' (or `--group') flag that causes information to be
printed about the specified group instead of the group's
contents. (sort of like Unix's `ls -d'). The `-g' can be used
in combination with `-r' to print information about the group
and its contents.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./configure.in
./acconfig.h
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5public.h
./src/H5Omtime.c
Check for <stddef.h>
Checks for `__tm_gmtoff' in `struct tm' because old versions
of GNU libc are different than recent versions. This fixes the
failing mtime test.
./bin/config.guess
./config/freebsd2.2.7 [REMOVED]
./config/freebsd [ADDED]
Changed the name so it works with all versions of FreeBSD.
./src/H5.c
Moved H5F after H5T and H5G in H5_term_library() to satisfy
dependencies.
./src/H5G.c
Fixed a bug that caused H5Gcreate() to fail if the group name
had trailing slashes.
./src/H5Gpublic.h
Changed `group_name' to `name' in a prototype.
./src/Makefile.in
Dynamic library on Linux, but needs for work to be generally
useful.
./src/H5HG.c
./src/H5HGprivate.h
Fixed alignment problems when using old GCC compilers (like
the one shipped with RedHad Linux).
./tools/h5ls.c
Fixed a bug where the contents of the root group could be
listed twice if there was a link back to the root
group. Similarly for groups that are mentioned on the command
line.
Fixed a bug where unknown types were printed with a random
type class number.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
Fixed O(log N) conversion bugs.
|
| |
|
|
|
|
|
|
| |
----------------------
./src/H5HG.c
Fixed a bug in the alignment calculation for the heap free
space. The reference test passes now.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5Iprivate.h
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sselect.c
./src/H5T.c
./src/H5TB.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5detect.c
./src/H5private.h
Most of these changes are because the `interface_initialize_g'
variable change from hbool_t to int. It's a one line change.
Changed the way the library is closed so we have more control
over the order the interfaces are shut down. Instead of
registering an atexit() function for every interface in some
haphazard order we just register one: H5_term_library() which
then calls the H5*_term_interface() functions in a
well-defined order.
If the library is closed and then reopened repeatedly by
calling H5close() and H5open() in a loop we only add one copy
of the library termination functions with atexit().
Termination is a two-step process in order to help detect
programming errors that would cause an infinite loop caused by
the termination of one interface waking up some other
previously terminated interface. The first step terminates
the interface and *marks it as unusable*. After all
interfaces are terminated then we mark them all as usable
again. The FUNC_ENTER() macro has been modified to return
failure or to dump core (depending on whether NDEBUG is
defined) if we try to call an interface while it's shutting
down.
./src/H5.c
The H5dont_atexit() function returns failure if it's called
more than once or if it's called too late. However, the error
stack is not automatically printed on failure because the
library might not be initialized yet
./test/chunk.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/overhead.c
./test/ragged.c
Changed the extra cast for Win32 so we do floating point
division again -- it was just confusion about precedence and
associativity of casting and the C coercion rules. Removed
extra carriage returns inserted by broken operating system.
./src/H5Ffamily.c
Fixed an bug where H5F_fam_write() lowered the EOF marker for
one of the family members causing H5F_fam_read() to read
zeros.
./test/h5test.h [NEW]
./test/h5test.c [NEW]
./test/Makefile.in
./test/bittests.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
Support library for test files. This isn't done yet but
Katie's contractions are ~10 minutes apart so I figured I
better back this stuff up just in case I'm not here next
week...
Eventually all test files will understand HDF5_DRIVER to name
the low level file driver and parameters so we can easily test
various drivers. They will also understand HDF5_PREFIX to
prepend to the beginning of file names which is necessary for
testing ROMIO with various drivers. Also, the cleanup function
will know how to use the file name prefix and will understand
different file driver naming schemes like file families. I'm
not sure they'll understand the `gsf:' type prefixes yet.
Note, the external test is completely commented out because
I'm in the middle of modifying it. It will still compile and
run but it doesn't test anything at the moment.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./INSTALL.parallel [NEW]
We're beginning to unify some of the parallel installation
steps. This file will contain general information for
installing the parallel library. It's not complete yet.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Check for xdr_int() in libnsl required on Solaris when linking
with hdf4. It's found on the Irix system I tested which
complains that `-lnsl' didn't resolve any symbols. Oh well.
Fixed the order of searching for libdf and libmfhdf for hdf4
linking.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5Z.c
Check for compress() in libz in order to find older versions
of the library that will still work for hdf4. Added a
separate check for compress2() that hdf5 will use.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Sselect.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./test/bittests.c
./test/gheap.c
./test/hyperslab.c
./test/istore.c
./test/tmeta.c
./test/trefer.c
./test/tselect.c
./tools/h5debug.c
./tools/h5tols.c
Added checks for Posix.1g types like `int8_t'. If not defined
then H5private.h defines them. Changed all `int8' etc. to
`int8_t'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5I.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
Calling H5*_term_interface() resets interface_initialize_g to
FALSE so a subsequent call to H5open() (implied or explicit)
reinitializes global variables properly.
./src/H5private.h
./src/H5Oefl.c
./src/H5S.c
Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to
SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they
match the Posix.1 constants in <limits.h>.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5detect.c
Added 36 more integer hardware conversion functions to the
type conversion table for conversions to/from `long long' and
`unsigned long long'. The `long long' names will be changed
shortly to make them portable to Win32.
Changed H5T_init() to H5T_native_open() and added an
H5T_native_close() to open and close the predefined native
data types.
Increased the initial size of the type conversion table from
64 to 128 entries.
Reordered the 90 new integer conversion functions so the names
that are printed favor `int' over `short' or `long' when two
of them are the same.
./test/dtypes.c
Added hardware and software integer conversion tests for the
56 functions I added recently but not the additional 36
checked in this time. That will come next.
Call H5close() after each test so type conversion statistics
are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes
Added more debugging output for when things go wrong.
./src/H5private.h
Removed trailing carriage-returns inserted by broken operating
system ;-)
|
| |
|
|
|
|
| |
"non-negative/negative"
and also fixed a few more explicit checks against FAIL.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./doc/html/H5.format.html
./src/H5HG.c
Fixed a bug in the global heap that caused H5HG_read() to
write past the end of the buffer in certain cases.
./test/big.c
The test is skipped if hdf5 was configured with
`--disable-hsizet'.
./src/H5Ofill.c
Data type conversions are implemented for the fill value.
./src/H5.c
Tracing prints one of H5P_FILE_CREATE, H5P_FILE_ACCESS,
H5P_DATASET_CREATE, H5P_DATASET_XFER, or H5P_MOUNT instead of
the more cryptic H5I_TEMPLATE_* constants.
./src/H5D.c
Removed prototype for H5D_find_name().
./src/H5I.c
The GROUP_MASK and ID_MASK are both calculated from GROUP_BITS
instead of being set by hand.
We don't use the sign bit of hid_t; all valid hid_t values are
positive so we can say things like `if ((file=H5Fopen(...))<0)'.
Changed `(int)pow(2.0,x)' to `1<<x' so we don't have to worry
about rounding.
Fixed H5I_get_type() so it doesn't always fail an assertion.
./src/H5E.c
./src/H5Epublic.h
Added minor error H5E_MOUNT
./src/H5F.c
./src/H5Fprivate.h
Added H5Fmount() and H5Funmount(). Mounting and unmounting
works as documented but some of the other things aren't
implemented yet, the biggest being current working groups
always acting on the root of the mount tree, and H5Fclose()
closing the entire tree. The rest of the stuff will be added
shortly...
./src/H5P.c
./src/H5Ppublic.h
Added the H5P_MOUNT property list but haven't implemented any
particular properties for it yet.
./src/H5Gstab.c
Hard links across files return an error instead of failing an
assertion.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./COPYING
Reformatted as text instead of C. Removed zlib crew from the
list of contributors since no zlib code is actually in the
hdf5 library.
./INSTALL
./INSTALL.ascired
./MANIFEST
Minor updates for Beta release including version number
change.
./INSTALL_MAINT
Added information about making a release.
./RELEASE
Updated function list based on public header files.
./bin/checkposix
Got rid of complaints about some obvious things.
./doc/html/H5.api.html
./doc/html/RM_H5F.html
./src/H5F.c
./src/H5Fpublic.h
./test/tfile.c
Changed H5Fget_create_template() and H5Fget_access_template()
to H5Fget_create_plist() and H5Fget_access_plist() since that
conforms better to lots of other names.
./doc/html/Datatypes.html
./doc/html/ExternalFiles.html
./doc/html/Files.html
./doc/html/H5.api.html
./doc/html/H5.sample_code.html
./doc/html/RM_H5F.html
./doc/html/RM_H5Front.html
Changed `template' to `property list', etc.
./doc/html/Ragged.html [NEW]
Documentation for ragged arrays.
./src/H5Iprivate.h
./src/H5Ipublic.h
./src/H5I.c
Changed the scope of some symbols to be more local.
./src/H5.c
./src/H5AC.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5I.c
./src/H5O.c
./src/H5Ocomp.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5P.c
./src/H5S.c
./src/H5Shyper.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5private.h
Fixed some violations of our naming scheme by adding HD to the
beginning of all Posix functions.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./src/H5.c
Fixed an argument promotion bug in HDfprintf()
./src/H5Fistore.c
Fixed a array bounds read error.
./src/H5HG.c
Fixed uninitialized (but unused) data appearing in the hdf5
file, a potential security problem.
./src/H5T.c
./src/H5Tpublic.h
Added new data types for hdf5 types: H5T_NATIVE_HSIZE,
H5T_NATIVE_HSSIZE, H5T_NATIVE_HERR, and H5T_NATIVE_HBOOL. I
did not add H5T_NATIVE_HID since I couldn't think of a reason
that it would be stored in a file anyway.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./doc/html/H5.format.html
./src/H5Gent.c
./src/H5Gprivate.h
./src/H5Oattr.c
./src/H5Oprivate.h
./src/H5Oshared.c
./src/H5HG.c
./src/H5HGprivate.h
Added padding fields in symbol table entries, attribute
messages, shared messages, and global heap objects to insure
that things are aligned on 8-byte boundaries in the file, and
thus in memory. Otherwise some little endian machines
complain (DEC Alpha) during encoding/decoding of file meta
data. I chose to add alignment to the file rather than
rewriting the ENCODE/DECODE macros for the little endian case.
Completely rewrote the section on attribute messages.
More alignment stuff will follow.
./src/H5detect.c
Fixed a typo `nd'->`dn'
./test/dtypes.c
Commented out conversion tests to/from `long double' on
machines where it's the same size as `double' to get rid of
compiler warnings.
./doc/html/Big.html
Fixed a couple typos.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./src/H5Tbit.c
./src/H5Tpkg.h
Fixed a bug in H5T_bit_copy(). Added H5T_bit_get_d() and
H5T_bit_set_d() which treat portions of a bit vector as an
unsigned integer. Added H5T_bit_inc() that increments part of
a bit vector and returns an indication of overflow.
./src/H5Tconv.c
./src/H5Tpkg.h
./test/dtypes.c
Added a slow general floating point conversion which works so
far on Intel, MIPS, and DEC but the test is turned off because
a cast from double to float will cause a SIGFPE on some
systems if an overflow occurs.
Added fast hardware conversions between native floating point
types. This function is also subject to the SIGFPE problem.
./src/H5detect.c
Removed the exponent bias adjustment when the significand
isn't normalized. This is now handled in the conversion
functions instead.
./src/H5T.c
Register new conversion functions.
Plugged a memory leak in the library termination code.
./RELEASE
Added a list of major changes since the first alpha.
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5AC.c
./src/H5D.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5G.c
./src/H5Gprivate.h
./src/H5HG.c
./src/H5O.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
Fixed various compiler warnings on Irix64.
./src/H5MM.c
Added PABLO_MASK to this file.
./test/chunk.c
Removed a warning about memcpy().
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
./INSTALL_MAINT
./README
./RELEASE
Partially updated for second alpha, but haven't updated
version numbers yet.
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5T.c
./src/H5Tconv.c
./src/H5detect.c
./test/hyperslab.c
./test/istore.c
Changed memory allocation functions so they fail instead of
dumping core. The `x' was removed from the name to remind us
of that: H5MM_xmalloc() -> H5MM_malloc(), etc.
H5MM_calloc() takes one argument like H5MM_malloc() instead of
two like calloc() because we almost always called it with `1'
for one of the arguments anyway. The only difference between
the two functions is that H5MM_calloc() returns memory which
is initialized to zero.
./src/H5Gent.c
./src/H5Gprivate.h
Removed H5G_ent_calloc() since it wasn't used.
./src/H5Fistore.c
Fixed a bug found by Albert. Thanks, Albert! This fix
combined with the changes to memory allocation prevent the
library from failing an assertion if the application uses an
unreasonable size for chunks (like Alberts 10000x10000x4).
./src/H5MF.c
./src/H5MFprivate.h
Changed H5MF_free() to H5MF_xfree() since calling it with an
undefined address is allowed.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
mode to use for data transfer. Currently, INDEPENDENT transfer
is the default mode. Collective is supported for files opened
via the MPIO driver. Specific changes to individual files follow.
H5D.c:
Replaced previous kludge of passing xfer_mode via the file access_mode
with xfer_mode function parameter all the way to the low level I/O
drivers.
H5Dprivate.h:
The H5D_xfer_t.xfer_mode is now used in serial and parallel modes.
Removed the "HAVE_PARALLEL" macro condition to support it.
H5Dpublic.h:
Added H5D_XFER_DFLT as a new value for H5D_transfer_t and removed
the HAVE_PARALLEL condition macro to make the H5D_transfer_t
definition available to both serial and parallel version.
H5B.c:
H5F.c:
H5Farray.c:
H5Fcore.c:
H5Ffamily.c:
H5Fistore.c:
H5Flow.c:
H5Fmpio.c:
H5Fsec2.c:
H5Fsplit.c:
H5Fstdio.c:
H5Gnode.c:
H5HG.c:
H5HL.c:
H5O.c:
H5Sprivate.h:
H5Ssimp.c:
debug.c:
Added xfer_mode to the argument lists of the following routines to
specify data transfer mode. Then updated calls to these routines
with appropriate transfer mode. Whenever cases that collective
mode is inappropriate (e.g. object header read-write, flush),
H5D_XFER_DFLT is used. The H5D_XFER_DFLT mode is currently
acting the same as the independent mode.
H5F_block_read
H5F_block_write
H5F_arr_read
H5F_arr_write
H5F_core_read
H5F_core_write
H5F_fam_read
H5F_fam_write
H5F_mpio_read
H5F_mpio_write
H5F_low_write
H5F_low_read
H5F_sec2_read
H5F_sec2_write
H5F_split_read
H5F_split_write
H5F_stdio_read
H5F_stdio_write
H5S_simp_fgath
H5S_simp_fscat
H5S_simp_read
H5S_simp_write
H5Fprivate.h:
H5P.c:
Removed access_mode field from struct H5F_access_t type.
The access-mode was the initial design to control independent
or collective I/O mode. It is now supported by the data
transfer mode.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./src/H5B.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Ssimp.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5private.h
./src/H5public.h
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tfile.c
./test/th5s.c
Anything having to do with the size of a dataset now uses the
types `hsize_t' and `hssize_t' which must be the same size and
at least as large as `size_t'. This isn't fully tested yet,
so hsize_t and hssize_t are defined as size_t and ssize_t in
H5public.h. Setting them to larger values will trip up gcc
versions less than 2.8.1 on x86 platforms.
Documented unused function formals with `__unused__' before
the formal name. This also has the effect of supressing
warning messages for gcc since it's defined to be
`__attribute__((unused))' in the H5private.h file.
./src/debug.c
./src/h5ls.c
If the file name contains a `%' then the file is opened as a
file family with H5P_DEFAULT for the file member access
property list.
./src/h5ls.c
The group name is optional, defaulting to `/'.
./src/hdf5.h
Added some missing public header files.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./configure.in
Moved setting of compiler warning switches earlier in the file.
Turned on more warning switches to gcc.
./config/linux
Prints a warning if the gcc version is less than 2.8.1 since
that version has problems with register allocation for `long
long'.
./html/Datatypes.html
Documented sharing of data types between datasets.
./src/H5G.c
./src/H5Gpublic.h
Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard
links. Still have soft links to do.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5HLprivate.h
./src/H5I.c
./src/H5Iprivate.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5Ssimp.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5detect.c
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tstab.c
Fixed comparisons between signed and unsigned values. Fixed
warnings about unused function arguments.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./MANIFEST
./test/Makefile.in
./test/shtype.c [NEW]
Added some tests for shared data types.
./configure.in
Removed MF and HL from the default debug list since. MF
because it hasn't been implemented yet and HL because it
produces lots of annoying messages about adjusting the size of
local heaps.
./src/H5F.c
./src/H5T.c
./src/H5Tprivate.h
Fixed a bug with opening the same file twice. The first close
on the file_id incorrectly closed shared data structs.
Closing a file now correctly unshares data types that might be
pointing into that file.
./src/H5T.c
./src/H5Tpublic.h
Added an H5Tis_shared(). The caller supplies a file and a
data type and the function returns true if the data type is
currently marked for sharing in that file.
./src/H5AC.c
./src/H5F.c
./src/H5HL.c
./src/H5HG.c
./src/H5MF.c
./src/H5O.c
We now detect errors sooner when writing to a read-only
file. In the past, the error might not show up until the
cached item was flushed, and it was sometimes possible to not
even get an error!
./src/H5I.c
./src/H5Iprivate.h
If the search function fails then H5I_search() returns
failure. Also, the first argument for the search function
isn't const anymore because we might want the search to have
side effects (like calling H5T_unshare() for all shared data
types whose file just closed).
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
----------------------
./MANIFEST
./src/Makefile.in
./test/Makefile.in
Added new files.
./config/linux
./src/H5HL.c
./src/H5HLprivate.h
./src/H5MF.c
./src/H5MFprivate.h
Added `-DH5HL_DEBUG -DH5MF_DEBUG' to the debug list.
./html/H5.format.html
Updated shared object message information.
./src/H5D.c
Datasets can now share data types.
./src/H5F.c
Updated a comment that referred to H5ACC_WRITE.
./src/H5HG.c
./src/H5HGprivate.h
Moved a few things around. Made debugging better so you can
now give a collection address to ./src/debug and it shows some
useful stuff.
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c [NEW]
./src/H5Ostab.c
Supports shared messages.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
The H5Tshare() function allows the user to give the library
hints about how a data type will be used.
./test/shtype.c
Tests the H5Tshare() function.
./test/gheap.c
Tests the global heap.
./configure.in
./config/BlankForm [NEW]
./config/alpha-dec
./config/freebsd2.2.1
./config/hpux10.20
./config/irix6.2
./config/irix64
./config/linux
./config/powerpc-ibm-aix4.2.1.0
./config/rs6000-ibm-aix4.1.4.0
./config/solaris2.5
Cleaned up lots of configuration stuff and made the site
configuration files lots easier and more uniform. To make a
new file grab the BlankForm and modify it.
By default, debugging is turned on for most packages. Within
a package one can use `#ifdef H5AC_DEBUG' to wrap debugging
code. Other options are:
--enable-debug
--enable-debug=yes
The default, most but not all packages.
--disable-debug
--enable-debug=no
--enable-debug=none
The symbol NDEBUG is defined and none of the package
debug symbols.
--enable-debug=all
Debugging is turned on for all packages. This might
produce lots of output.
--enable-debug=g,d
Debugging is turned on for H5G and H5D.
A compile mode is also now supported
--enable-production
--enable-production=yes
The library is compiled with optimizations turned on.
The compiler flags are augmented by adding PROD_CFLAGS
and PROD_CPPFLAGS which are defined in the site config
file.
--disable-production
--enable-production=no
The default. The library is compiled for development
by including DEBUG_CFLAGS and DEBUG_CPPFLAGS defined in
the site config file. This is usually just `-g'.
--enable-production=profile
--enable-production=pg
Builds a library for profiling by including the flags
from PROFILE_CFLAGS and PROFILE_CPPFLAGS defined in the
site config file. This is usullay just `-pg' but it
could include optimization flags as well depending on
the type of profile one wants.
In summary, configure by saying `./configure' and you'll get a
development version of the library. Configure by saying
`./configure --enable-production --disable-debug' and you'll
get a production version with no debugging code.
|
|
|
----------------------
./MANIFEST
./src/H5HG.c [new]
./src/H5HGprivate.h [new]
./src/H5HGpublic.h [new]
./src/Makefile.in
Added global heaps, H5HG. This compiles but is untested.
./src/H5D.c
./src/H5G.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5HL.c [renamed from H5H.c]
./src/H5HLprivate.h [renamed from H5Hprivate.h]
./src/H5HLpublic.h [renamed from H5Hpublic.h]
./src/H5Oefl.c
./src/Makefile.in
./src/hdf5.h
./test/theap.c
Renamed local heaps from H5H to H5HL.
./src/H5AC.c
./src/H5ACprivate.h
./src/debug.c
Added debugging support for global heap collections.
./html/H5.format.html
Ripped out the old small object heap documentation and added
documentation for the new global heap.
./html/H5.api.html
./src/H5P.c
./src/H5Ppublic.h
./src/H5F.c
./src/H5Fprivate.h
./src/H5private.h
The H5Pget_version() function no longer returns a small object
heap version number. Instead, each collection of the global
heap has its own version number instead of a single number in
the file boot block.
./bin/release
Omit files marked for removal by CVS even though the removal
hasn't been committed yet.
./test/iopipe.c
Removed warnings about casting unsigned int to double on Irix64.
./MANIFEST
Removed ./test/testpar/phdf5sup.c
|
