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mode to use for data transfer. Currently, INDEPENDENT transfer
is the default mode. Collective is supported for files opened
via the MPIO driver. Specific changes to individual files follow.
H5D.c:
Replaced previous kludge of passing xfer_mode via the file access_mode
with xfer_mode function parameter all the way to the low level I/O
drivers.
H5Dprivate.h:
The H5D_xfer_t.xfer_mode is now used in serial and parallel modes.
Removed the "HAVE_PARALLEL" macro condition to support it.
H5Dpublic.h:
Added H5D_XFER_DFLT as a new value for H5D_transfer_t and removed
the HAVE_PARALLEL condition macro to make the H5D_transfer_t
definition available to both serial and parallel version.
H5B.c:
H5F.c:
H5Farray.c:
H5Fcore.c:
H5Ffamily.c:
H5Fistore.c:
H5Flow.c:
H5Fmpio.c:
H5Fsec2.c:
H5Fsplit.c:
H5Fstdio.c:
H5Gnode.c:
H5HG.c:
H5HL.c:
H5O.c:
H5Sprivate.h:
H5Ssimp.c:
debug.c:
Added xfer_mode to the argument lists of the following routines to
specify data transfer mode. Then updated calls to these routines
with appropriate transfer mode. Whenever cases that collective
mode is inappropriate (e.g. object header read-write, flush),
H5D_XFER_DFLT is used. The H5D_XFER_DFLT mode is currently
acting the same as the independent mode.
H5F_block_read
H5F_block_write
H5F_arr_read
H5F_arr_write
H5F_core_read
H5F_core_write
H5F_fam_read
H5F_fam_write
H5F_mpio_read
H5F_mpio_write
H5F_low_write
H5F_low_read
H5F_sec2_read
H5F_sec2_write
H5F_split_read
H5F_split_write
H5F_stdio_read
H5F_stdio_write
H5S_simp_fgath
H5S_simp_fscat
H5S_simp_read
H5S_simp_write
H5Fprivate.h:
H5P.c:
Removed access_mode field from struct H5F_access_t type.
The access-mode was the initial design to control independent
or collective I/O mode. It is now supported by the data
transfer mode.
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----------------------
./src/H5B.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Ssimp.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5private.h
./src/H5public.h
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tfile.c
./test/th5s.c
Anything having to do with the size of a dataset now uses the
types `hsize_t' and `hssize_t' which must be the same size and
at least as large as `size_t'. This isn't fully tested yet,
so hsize_t and hssize_t are defined as size_t and ssize_t in
H5public.h. Setting them to larger values will trip up gcc
versions less than 2.8.1 on x86 platforms.
Documented unused function formals with `__unused__' before
the formal name. This also has the effect of supressing
warning messages for gcc since it's defined to be
`__attribute__((unused))' in the H5private.h file.
./src/debug.c
./src/h5ls.c
If the file name contains a `%' then the file is opened as a
file family with H5P_DEFAULT for the file member access
property list.
./src/h5ls.c
The group name is optional, defaulting to `/'.
./src/hdf5.h
Added some missing public header files.
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----------------------
./configure.in
Moved setting of compiler warning switches earlier in the file.
Turned on more warning switches to gcc.
./config/linux
Prints a warning if the gcc version is less than 2.8.1 since
that version has problems with register allocation for `long
long'.
./html/Datatypes.html
Documented sharing of data types between datasets.
./src/H5G.c
./src/H5Gpublic.h
Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard
links. Still have soft links to do.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5HLprivate.h
./src/H5I.c
./src/H5Iprivate.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5Ssimp.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5detect.c
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tstab.c
Fixed comparisons between signed and unsigned values. Fixed
warnings about unused function arguments.
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----------------------
./MANIFEST
./test/Makefile.in
./test/shtype.c [NEW]
Added some tests for shared data types.
./configure.in
Removed MF and HL from the default debug list since. MF
because it hasn't been implemented yet and HL because it
produces lots of annoying messages about adjusting the size of
local heaps.
./src/H5F.c
./src/H5T.c
./src/H5Tprivate.h
Fixed a bug with opening the same file twice. The first close
on the file_id incorrectly closed shared data structs.
Closing a file now correctly unshares data types that might be
pointing into that file.
./src/H5T.c
./src/H5Tpublic.h
Added an H5Tis_shared(). The caller supplies a file and a
data type and the function returns true if the data type is
currently marked for sharing in that file.
./src/H5AC.c
./src/H5F.c
./src/H5HL.c
./src/H5HG.c
./src/H5MF.c
./src/H5O.c
We now detect errors sooner when writing to a read-only
file. In the past, the error might not show up until the
cached item was flushed, and it was sometimes possible to not
even get an error!
./src/H5I.c
./src/H5Iprivate.h
If the search function fails then H5I_search() returns
failure. Also, the first argument for the search function
isn't const anymore because we might want the search to have
side effects (like calling H5T_unshare() for all shared data
types whose file just closed).
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----------------------
./MANIFEST
./src/Makefile.in
./test/Makefile.in
Added new files.
./config/linux
./src/H5HL.c
./src/H5HLprivate.h
./src/H5MF.c
./src/H5MFprivate.h
Added `-DH5HL_DEBUG -DH5MF_DEBUG' to the debug list.
./html/H5.format.html
Updated shared object message information.
./src/H5D.c
Datasets can now share data types.
./src/H5F.c
Updated a comment that referred to H5ACC_WRITE.
./src/H5HG.c
./src/H5HGprivate.h
Moved a few things around. Made debugging better so you can
now give a collection address to ./src/debug and it shows some
useful stuff.
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c [NEW]
./src/H5Ostab.c
Supports shared messages.
./src/H5T.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
The H5Tshare() function allows the user to give the library
hints about how a data type will be used.
./test/shtype.c
Tests the H5Tshare() function.
./test/gheap.c
Tests the global heap.
./configure.in
./config/BlankForm [NEW]
./config/alpha-dec
./config/freebsd2.2.1
./config/hpux10.20
./config/irix6.2
./config/irix64
./config/linux
./config/powerpc-ibm-aix4.2.1.0
./config/rs6000-ibm-aix4.1.4.0
./config/solaris2.5
Cleaned up lots of configuration stuff and made the site
configuration files lots easier and more uniform. To make a
new file grab the BlankForm and modify it.
By default, debugging is turned on for most packages. Within
a package one can use `#ifdef H5AC_DEBUG' to wrap debugging
code. Other options are:
--enable-debug
--enable-debug=yes
The default, most but not all packages.
--disable-debug
--enable-debug=no
--enable-debug=none
The symbol NDEBUG is defined and none of the package
debug symbols.
--enable-debug=all
Debugging is turned on for all packages. This might
produce lots of output.
--enable-debug=g,d
Debugging is turned on for H5G and H5D.
A compile mode is also now supported
--enable-production
--enable-production=yes
The library is compiled with optimizations turned on.
The compiler flags are augmented by adding PROD_CFLAGS
and PROD_CPPFLAGS which are defined in the site config
file.
--disable-production
--enable-production=no
The default. The library is compiled for development
by including DEBUG_CFLAGS and DEBUG_CPPFLAGS defined in
the site config file. This is usually just `-g'.
--enable-production=profile
--enable-production=pg
Builds a library for profiling by including the flags
from PROFILE_CFLAGS and PROFILE_CPPFLAGS defined in the
site config file. This is usullay just `-pg' but it
could include optimization flags as well depending on
the type of profile one wants.
In summary, configure by saying `./configure' and you'll get a
development version of the library. Configure by saying
`./configure --enable-production --disable-debug' and you'll
get a production version with no debugging code.
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----------------------
./MANIFEST
./src/H5HG.c [new]
./src/H5HGprivate.h [new]
./src/H5HGpublic.h [new]
./src/Makefile.in
Added global heaps, H5HG. This compiles but is untested.
./src/H5D.c
./src/H5G.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5HL.c [renamed from H5H.c]
./src/H5HLprivate.h [renamed from H5Hprivate.h]
./src/H5HLpublic.h [renamed from H5Hpublic.h]
./src/H5Oefl.c
./src/Makefile.in
./src/hdf5.h
./test/theap.c
Renamed local heaps from H5H to H5HL.
./src/H5AC.c
./src/H5ACprivate.h
./src/debug.c
Added debugging support for global heap collections.
./html/H5.format.html
Ripped out the old small object heap documentation and added
documentation for the new global heap.
./html/H5.api.html
./src/H5P.c
./src/H5Ppublic.h
./src/H5F.c
./src/H5Fprivate.h
./src/H5private.h
The H5Pget_version() function no longer returns a small object
heap version number. Instead, each collection of the global
heap has its own version number instead of a single number in
the file boot block.
./bin/release
Omit files marked for removal by CVS even though the removal
hasn't been committed yet.
./test/iopipe.c
Removed warnings about casting unsigned int to double on Irix64.
./MANIFEST
Removed ./test/testpar/phdf5sup.c
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