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* Fixed the java assert issue with H5O cache corking calls.Dana Robinson2019-10-031-3/+4
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* Converted H5O MD cache cork calls to use the VOL.Dana Robinson2019-09-271-0/+50
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* Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameterJerome Soumagne2019-08-141-1/+1
| | | | Fix app_ref_count from being incremented when private routines are used
* Added the map (H5M) APIDana Robinson2019-08-131-0/+5
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* Add support for GCC9, update warnhist script, and clean up warnings.Quincey Koziol2019-07-031-45/+45
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* Updated configure & CMake compiler flags for GCC 8.x, along with correspondingQuincey Koziol2019-06-281-1/+1
| | | | | changes to warnhist script (and some extra improvements for condensing C++ and Java warnings), and fixed a bunch of warnings.
* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-1/+1
| | | | clean up warnings.
* Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAMEJerome Soumagne2019-05-231-1/+1
| | | | Implement native H5VL_OBJECT_GET_NAME by addr
* Fix issue with H5Iiterate always stopping with an error after the first ↵Jordan Henderson2019-04-231-0/+2
| | | | iteration
* Add an 'unwrap' VOL callback, so that connectors can unwrap an underlyingQuincey Koziol2019-04-211-1/+1
| | | | object without closing it. (Especially needed for pass-through connectors)
* Fixed HDFFV-10210 and HDFFV-10587Binh-Minh Ribler2019-03-201-0/+3
| | | | | | | | | | | Description: - Added parameter validation (HDFFV-10210) - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438) - Fixed typos in various tests Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-1/+0
| | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* Switch loc_params to VOL callbacks to pass struct by pointer instead of byQuincey Koziol2018-11-221-1/+1
| | | | value.
* Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-15/+6
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* Switch driver | plugin => connector.Quincey Koziol2018-11-041-6/+6
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* Checkpoint progress on stacking VOL plugins - all standalone regression testsQuincey Koziol2018-10-261-9/+6
| | | | in the 'test' directory appear to be working.
* Updates after merging changes from develop.Quincey Koziol2018-10-261-9/+7
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-10-251-27/+11
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| * Updates to the VOL ID and object API calls.Dana Robinson2018-10-171-29/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This brings the H5VL code in line with the H5I code regarding naming, parameter order, etc. Several public API calls were affected by this change. These changed names to reflect their use with VOL drivers: H5VLregister() --> H5VLregister_driver() H5VLregister_by_name() --> H5VLregister_driver_by_name() H5VLunregister() --> H5VLunregister_driver() H5VLis_registered() --> H5VLis_driver_registered() This call was renamed to match H5Iregister(). The order of the first two parameters also reversed and the object pointer is now const. H5VLobject_register() --> H5VLregister()
* | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-91/+87
|/ | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-22/+283
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* Updated the H5I debug dump to not segfault when types are not initializedDana Robinson2018-10-061-9/+16
| | | | or contain zero IDs in the skip list.
* The H5I debug ID dump function is now always available insteadDana Robinson2018-10-061-26/+15
| | | | of hidden behind an H5_DEBUG_OUTPUT ifdef.
* Normalization with vol_integration (property lists, file drivers,Dana Robinson2018-09-211-6/+7
| | | | other misc).
* Normalization with vol_integration (misc internal and datatype)Dana Robinson2018-09-201-3/+3
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* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-181-38/+2
| | | | orginally intended to support the full SWMR feature.
* Normalization with the vol_integration branch.Dana Robinson2018-06-061-231/+238
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* Normalize with vol_integration.Dana Robinson2018-05-291-58/+52
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* Cleanup API context function usage.Quincey Koziol2018-03-191-15/+0
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-5/+57
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* Normalization with VOL integration branch.Dana Robinson2017-12-011-367/+290
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* Normalization with VOL integration branch.Dana Robinson2017-11-301-44/+32
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* * Reverted removal of H5I_REFERENCE to avoid breaking binaryDana Robinson2017-07-031-2/+2
| | | | | | compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c.
* * Made H5FD_driver_query() a private function instead of static.Dana Robinson2017-05-241-2/+2
| | | | | | | * Moved H5FD_driver_query() to H5FDint.c. * Minor typo fixes in H5I.c. * Updated swmr.c to check the VFD feature flags and skip the retries test when the VFD is not compatible with H5P_DEFAULT.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+67
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-1/+1
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-1/+1
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r27768] Description:Quincey Koziol2015-09-141-84/+60
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27415] Fix potential error with H5I_clear_type which could occur when ↵Neil Fortner2015-07-201-56/+82
| | | | | | | | | | | a callback closed a different ID in the same type. Added a new skiplist routine, H5SL_try_free_safe, which iterates over items, freeing some of them, and which intercepts and defers attempts to remove from the list outside of the main iteration. Changed H5I_clear_type to use this function. Tested: jam, koala, ostrich (h5committest); ummon
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-2/+2
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r27045] Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-orderedDana Robinson2015-05-101-3/+3
| | | | | | the arguments to be in a more logical order. Tested on: h5committest
* [svn-r26961] Description:Quincey Koziol2015-04-291-48/+17
| | | | | | | | Clean up H5I code, to eliminate duplicated sections of code. Tested on: Mac OSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26246] Corrects a regular expression in the bin/trace Perl script that ↵Dana Robinson2015-02-201-0/+3
| | | | | | | | | | did not match API calls which return a pointer. Fixes: HDFFV-9141 Tested on: h5committest
* [svn-r25496] Description:Quincey Koziol2014-07-301-90/+12
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r24869] Description:Quincey Koziol2014-03-231-7/+5
| | | | | | | | | | | | | | | | | | | | | | | | | Clean up more compiler warnings, plus merge a few Coverity bug fixes from the hdf5_1_8_coverity branch back to the trunk: r20877: Purpose: Fix coverity issue 1723 Description: Modified test_generate in hl/test_image to close file "f" before exit, even if an error occurs. r20879: Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go futher if call fails as well as empty. r20881: Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether FLAG_PRINTED is TRUE. But it had just been set to FALSE. I took out the condition check in the print statement. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel (too minor to require h5committest)
* [svn-r24261] Description:Quincey Koziol2013-10-071-4/+4
| | | | | | | | | | | | | | | | | | | Correct H5I use of skip list to acquire the 'next' pointer in the skip list after the ID's 'free' callback has been called, since it occasionally deletes the 'next' node. Also a little bit of code cleanup in other modules. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.11 (emu) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
* [svn-r24255] Description:Quincey Koziol2013-10-041-395/+362
| | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* [svn-r23685] Issue 8380 H5Zunregister caused seg fault. I simplied the ↵Raymond Lu2013-05-081-38/+4
| | | | | | iteration process over datasets, groups, and files as Quincey suggested. I also removed H5I_search that I introduced in last commit but didn't actually used it. Tested on jam and koala - simple change.
* [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some ↵Raymond Lu2013-04-291-4/+38
| | | | | | | | | protection measures: 1. If any opened object uses the filter, let it fail. 2. Flush all opened files to push any cached data to files. Tested with h5committest.
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