| Commit message (Collapse) | Author | Age | Files | Lines |
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* Removes the STATIC flavor of FUNC_ENTER macros
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* fixed missed closing of a dataset
* fixed missed closing of a dataset
* fixed typo in error return
* Committing clang-format changes
* minor edits
* code format
* Committing clang-format changes
* code format
* minor edit
* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging
* Committing clang-format changes
* changed size_i in printf to reflect the I/O.
* Committing clang-format changes
* Fixed seg fault with xlf on BE with -qintsize=8
* fixed error function string
* spelling corrections via codespell, added new spell check github actions
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* work around for https://github.com/codespell-project/codespell/issues/2137
* misc
* added missing file
* misc
* misc.
* misc
* switch to using Codespell with GitHub Actions
* misc.
* misc.
* fixed more sp errors
* Fix new typos found by codespell.
* fixed proceed with precede
* fixed variable in fortran test
* fixed minnum
* updated spelling list
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
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* Fixes parallel issues from recent C99 changes
* Adds MPE FUNC --> __func__ changes missed in earlier PRs
* Even more missed FUNC --> __func__ macros
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* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
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* Add BEGIN_FUNC / CATCH / END_FUNC to macros
* Remove incorrect trailing '{'
* Update trace script to wrap H5TRACE macros at 110 characters and improve
comments for code that performs this operation.
* Clean up printf-formatting in H5public.h and correct some oversights in the code.
* Reformat with BEGIN_FUNC / END_FUNC handled correctly by clang-format
* Run clang-format on changes.
* Correct H5_SIZEOF_HSIZE_T/H5_SIZEOF_HSSIZE_T macros to match typedef.
* And make the undef value match also.
* Update comment
* Update clang-format actions to exclude generated files.
* Post-process generated H5LTparse.h file as well as H5LTparse.c file.
* Fix formatting
* Update version of github clang-format action
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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reapplication to my new warnings branch, `warnings-again`. These
changes are included:
commit 915551b7bf64e777dd2007386ec77b1d117770da
Merge: 63858c2 a8892bb
Author: David Young <dyoung@hdfgroup.org>
Date: Mon Nov 25 17:39:49 2019 -0600
Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment
commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9
Merge: 5c911d8 f907b51
Author: David Young <dyoung@hdfgroup.org>
Date: Mon Nov 25 17:33:54 2019 -0600
Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b':
Oops, remove more C99 designated initializers for VS 2010 compatibility.
commit 63858c22e168acaec0af8ced6641f26102cc6bb0
Merge: 20ae787 5c911d8
Author: David Young <dyoung@hdfgroup.org>
Date: Mon Nov 25 17:04:42 2019 -0600
Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment
commit 5c911d8baf3ee7fe654269088eebdf07f59a8192
Merge: b8a5671 62208b0
Author: David Young <dyoung@hdfgroup.org>
Date: Mon Nov 25 16:58:27 2019 -0600
Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits)
Add an #include to get a function declaration.
Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*.
Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check.
Only use -Werror=cast-function-type with GCC 8 and later.
Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
Add new source files to CMakeLists.txt.
Mention the -Werror= flags in libhdf5.settings.in.
free -> HDfree
Promote decleration-after-statement warnings to errors.
Quiet decleration-after-statement warnings.
Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
Document H5D__chunk_mem_xfree_wrapper().
Undo accidental test deletion.
Oops, delete a debug printf that snuck in here.
Undo my changes to the HD macros, hadn't really intended those to be on this branch....
Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options.
Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc.
...
commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f
Merge: 46f8c61 edd5297
Author: David Young <dyoung@hdfgroup.org>
Date: Fri Nov 22 15:34:09 2019 -0600
Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment
commit 46f8c613d5117a8be5bc8385a072daa0b4262f06
Author: David Young <dyoung@hdfgroup.org>
Date: Fri Nov 22 15:29:00 2019 -0600
GCC really wants us to use `ll` to format `long long`, so try to make that work
before any other format modifier. Seems like we're not compiling the autoconf
test program with -Werror=format ? Probably should.
commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99
Author: David Young <dyoung@hdfgroup.org>
Date: Fri Nov 22 15:28:05 2019 -0600
It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or
C standards provide a PRI macro for it, so cast to intmax_t and format using
PRIdMAX.
commit 86eab12df7a89b546a38e99f8178dd2adbcb3433
Author: David Young <dyoung@hdfgroup.org>
Date: Fri Nov 22 15:26:25 2019 -0600
URemove some casts.se the right format string for the argument. Here and there
stop casting a printf argument.
commit f722f7cbecbaa99449941484b014426f62f1bed5
Merge: 58e3743 6d5ec83
Author: David Young <dyoung@hdfgroup.org>
Date: Fri Nov 22 14:44:16 2019 -0600
Merge branch 'add-werror-and-squash-some' into fprintf-experiment
commit 58e3743b7faa9836606ee91798fe80dfc0040da7
Author: David Young <dyoung@hdfgroup.org>
Date: Wed Nov 20 21:07:21 2019 -0600
Remove custom HDfprintf implementation, using the standard library's,
instead. Take a swipe at repairing fprintf format strings, mainly
replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with
"%zu".
Here and there remove an awkward cast of a printf argument to `long
long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead.
Change occurrences of "%t" to "%s" and perform a suitable change of
argument, `cond` -> `cond ? "TRUE" : "FALSE"`.
Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by
the compiler because of #ifdef'age.
commit d4366909293fa970c23512ac80e5d865d76cddbf
Author: David Young <dyoung@hdfgroup.org>
Date: Wed Nov 20 20:54:32 2019 -0600
Promote format-string warnigns to errors.
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the Autotools and CMake.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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and correspondingly remove 'const' from some internal routines. Also rename
some H5MF* routines to reflect their static/package usage.
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gets set on the dxpl correctly. Also restored the TAG macro
to H5FS__cache_hdr_pre_serialize() since otherwise the tag
won't be initialized.
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/64 2.6.x (koala) w/serial
Linux/32 2.6.x (jam) w/serial & parallel
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Correct several errors in fractal heap code: root indirect block was
getting pinned/protected more than once, "single" free space sections weren't
getting "re-parented" correctly when the heap transitioned between having a
root indirect block and a root direct block, and several related issues. Also
cleaned up some warnings in library/tests.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Mac OSX/64 10.7.3 (amazon) w/debug
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Bring changes from file free space branch back to the trunk. *yay!*
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.8 (amazon) in debug mode
Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Various bug fixes & cleanups with VFDs and file free space changes,
along with cleaning up compiler warnings.
Enable more VFDs (for 'make check-vfd' testing) for many tests.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Bring file free space branch changes through r15795 into trunk, which
includes a fair bit of code cleanup & rearrangement along with a couple of
bug fixes also.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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