| Commit message (Collapse) | Author | Age | Files | Lines |
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----------------------
./src/H5Tbit.c
./src/H5Tpkg.h
Fixed a bug in H5T_bit_copy(). Added H5T_bit_get_d() and
H5T_bit_set_d() which treat portions of a bit vector as an
unsigned integer. Added H5T_bit_inc() that increments part of
a bit vector and returns an indication of overflow.
./src/H5Tconv.c
./src/H5Tpkg.h
./test/dtypes.c
Added a slow general floating point conversion which works so
far on Intel, MIPS, and DEC but the test is turned off because
a cast from double to float will cause a SIGFPE on some
systems if an overflow occurs.
Added fast hardware conversions between native floating point
types. This function is also subject to the SIGFPE problem.
./src/H5detect.c
Removed the exponent bias adjustment when the significand
isn't normalized. This is now handled in the conversion
functions instead.
./src/H5T.c
Register new conversion functions.
Plugged a memory leak in the library termination code.
./RELEASE
Added a list of major changes since the first alpha.
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5AC.c
./src/H5D.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5G.c
./src/H5Gprivate.h
./src/H5HG.c
./src/H5O.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
Fixed various compiler warnings on Irix64.
./src/H5MM.c
Added PABLO_MASK to this file.
./test/chunk.c
Removed a warning about memcpy().
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./INSTALL_MAINT
./README
./RELEASE
Partially updated for second alpha, but haven't updated
version numbers yet.
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5T.c
./src/H5Tconv.c
./src/H5detect.c
./test/hyperslab.c
./test/istore.c
Changed memory allocation functions so they fail instead of
dumping core. The `x' was removed from the name to remind us
of that: H5MM_xmalloc() -> H5MM_malloc(), etc.
H5MM_calloc() takes one argument like H5MM_malloc() instead of
two like calloc() because we almost always called it with `1'
for one of the arguments anyway. The only difference between
the two functions is that H5MM_calloc() returns memory which
is initialized to zero.
./src/H5Gent.c
./src/H5Gprivate.h
Removed H5G_ent_calloc() since it wasn't used.
./src/H5Fistore.c
Fixed a bug found by Albert. Thanks, Albert! This fix
combined with the changes to memory allocation prevent the
library from failing an assertion if the application uses an
unreasonable size for chunks (like Alberts 10000x10000x4).
./src/H5MF.c
./src/H5MFprivate.h
Changed H5MF_free() to H5MF_xfree() since calling it with an
undefined address is allowed.
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----------------------
./html/Datasets.html
Fixed a couple of typos.
./src/H5.c
Added the `Z' modifier to HDfprintf() for `size_t' sizes. Use
it like this:
HDfprintf(stderr,"size is %Zd\n", (size_t)x);
./src/H5AC.c
./src/H5F.c
./src/H5Fprivate.h
The maximum number of meta data objects that can be cached can
be set from the application (but the library might not honor
it every time; it's a hint).
./src/H5D.c
Changed a warning message so it's not so alarming.
./src/H5Fistore.c
Chunks can be cached.
./src/H5O.c
./src/H5Oprivate.h
Added H5O_copy() and H5O_free() to copy and free messages.
./src/H5P.c
./src/H5Ppublic.h
Added H5Pset_cache() and H5Pget_cache() and changed lots of
"template" to "property list".
./src/H5Z.c
./src/H5Zpublic.h
Miscellaneous little things to clean up. Mostly just removed
H5Z_MAXVAL and added H5Z_USERDEF_MIN and H5Z_USERDEF_MAX.
./MANIFEST
./test/Makefile.in
./test/chunk.c [NEW]
Added a performance test for chunk caching. It looks at the
amount of I/O instead of timing because timing is partly
dependent on the chunk size and I wanted a measurement that
was a function of only the cache size. Run `chunk' with no
arguments and then say `gnuplot x-gnuplot' to see the plots
(press return between plots). Postscript files are created for
each plot.
./test/big.c
./test/cmpd_dset.c
./test/extend.c
./test/external.c
./test/gheap.c
Added H5F_ACC_DEBUG so we can see cache performance
statistics.
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----------------------
./html/Compression.html [NEW]
./html/Datasets.html
./html/H5.format.html
./html/H5.user.html
Documented compression. A couple of the H5P functions aren't
quite implemented yet but they're coming soon...
./src/H5Dprivate.h
./src/H5E.c
./src/H5Epublic.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocomp.c [NEW]
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sprivate.h
./src/H5Ssimp.c
./src/H5Z.c [NEW]
./src/H5Zprivate.h [NEW]
./src/H5Zpublic.h [NEW]
./src/Makefile.in
./src/hdf5.h
./test/dsets.c
./test/istore.c
Compression is now mostly working. Don't try to open a
compressed dataset though because the compression message
won't be read.
./html/Datatypes.html
./html/H5.api.html
./src/H5.c
./src/H5private.h
./src/H5D.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
Added timing support. When compiled with H5T_DEBUG defined
the library will print conversion bandwidths when the library
closes. The H5Tregister functions take a string as the first
argument so the statistics output is meaningful.
./MANIFEST
Added new files.
./configure.in
./src/H5config.h.in
Check for getrusage(). Check for compress2() in libz.a and
the zlib.h header file. Added `z' to the debug list.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
./src/debug.c
Cleaned up some indentation and added support to print istore
B-trees. From the debugger, give the B-tree address and the
dimensionality from the layout message of the object header.
./src/h5ls.c
The oid is printed as w:x:y:z where w and x are the file ID
and y and z are the OID within the file. You can give z or
y*2^32+z as an argument to the debugger to print the object
header for the object.
./src/H5AC.c
Cleaned up statistics and made them match those reported by
H5T and H5Z.
./src/H5MM.c
./src/H5MMprivate.h
./src/H5Fistore.c
Finally got rid of a couple of long-standing const cast
warnings.
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----------------------
./src/H5B.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Ssimp.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5private.h
./src/H5public.h
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tfile.c
./test/th5s.c
Anything having to do with the size of a dataset now uses the
types `hsize_t' and `hssize_t' which must be the same size and
at least as large as `size_t'. This isn't fully tested yet,
so hsize_t and hssize_t are defined as size_t and ssize_t in
H5public.h. Setting them to larger values will trip up gcc
versions less than 2.8.1 on x86 platforms.
Documented unused function formals with `__unused__' before
the formal name. This also has the effect of supressing
warning messages for gcc since it's defined to be
`__attribute__((unused))' in the H5private.h file.
./src/debug.c
./src/h5ls.c
If the file name contains a `%' then the file is opened as a
file family with H5P_DEFAULT for the file member access
property list.
./src/h5ls.c
The group name is optional, defaulting to `/'.
./src/hdf5.h
Added some missing public header files.
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----------------------
./configure.in
Moved setting of compiler warning switches earlier in the file.
Turned on more warning switches to gcc.
./config/linux
Prints a warning if the gcc version is less than 2.8.1 since
that version has problems with register allocation for `long
long'.
./html/Datatypes.html
Documented sharing of data types between datasets.
./src/H5G.c
./src/H5Gpublic.h
Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard
links. Still have soft links to do.
./src/H5AC.c
./src/H5ACprivate.h
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5HLprivate.h
./src/H5I.c
./src/H5Iprivate.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5S.c
./src/H5Ssimp.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5detect.c
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tstab.c
Fixed comparisons between signed and unsigned values. Fixed
warnings about unused function arguments.
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----------------------
./html/Files.html
./src/H5C.c
./src/H5Cpublic.h
./src/H5Ffamily.c
./src/H5Fprivate.h
./src/H5Fsplit.c
./test/tstab.c
Added file-access property functions.
The split driver takes file extensions as properties.
./src/H5A.c
./src/H5Aprivate.h
Added some comments. Changed H5A_destroy() to call the free
function on all the atoms that are destroyed. This fixes a bug
where the file boot block isn't updated if the file isn't
closed before calling exit().
Removed extra `*' and `&' from some places.
./src/H5AC.c
Replaced an occurrence of NO_ADDR with NULL.
./src/H5Odtype.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
Data types of compound members are pointers.
./H5private.h
Some changes to make lseek64() work on Irix 5.3 where header
files don't realize that `long long' works.
./acconfig.h
./configure.in
Removed definition for PHDF5 since it looks like everyone is
useing HAVE_PARALLEL now.
./configure.in
./src/H5detec.c
Added checks for gethostname() and getpwuid().
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to int64 encode/decode to fix purify on 32-bit systems, changes to
H5O_modify, changes to H5D.c to use H5F_open/close(), etc.
Documentation will be mailed shortly...
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Changed atexit() to HDatexit().
./src/H5AC.c
Changed qsort() to HDqsort().
./src/H5B.c
Changed memcmp() to HDmemcmp().
./src/H5E.c
./src/H5M.c
Added parentheses around indirect function calls so that
checkposix doesn't complain and to advertise that it's an
indirect function call.
./src/H5F.c
./src/H5G.c
Added errors field to each function prologue to test the
script mentioned above.
./src/H5H.c
Changed fputc() to HDfputc().
./src/H5MM.c
./src/H5MMprivate.h
The argument for H5MM_xfree() is a pointer to a constant even
though the argument to free() isn't. This reduces the number
of warnings in other parts of the code but creates a new
warning in this file.
./src/H5O.c
Plugged a few memory leaks that happen during error handling.
./src/H5Oname.c
./src/debug.c
Added `HD' to the beginning of some posix functions.
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I commented out a bunch of code in H5D_flush() so I could
compile and link the test cases. If you commit your changes
to that file, whatever they may be, I'll change H5D_flush() to
use the new directory functions described below...
./src/H5G.c
H5G_namei()
-----------
Understands files without directories. The root object
(directory or not) can be found by asking for `/' (or any
equivalent absolute or relative name like `/.//.///' or
`.//.///' (if the cwd is the root)) or by name like `/foo' (or
any other equivalent absolute or relative name) if the object
has a name message with the value `foo'. This function is
used by most of the other H5G functions so they now understand
directory-less files too.
H5G_new()
---------
Creates the root directory implicitly if it doesn't already
exist, moving any previous non-directory root object into the
new root directory before creating the requested directory
within the root. The creation of the root directory happens
first, regardless of whether the requested directory creation
succeeds. Once the root directory is created it never
disappears even if the file later has only one object. This
"feature" can be used to force a file to have a root directory
by saying something like:
H5G_new (..., "/", ...);
H5ECLEAR; /*we don't care about the H5E_EXISTS failure*/
The H5G_new() in the previous example fails because the root
directory is created implicitly before we attempt to create
the requested "/" directory.
H5G_find()
----------
Understands files without directories. If there is no root
object then this function is guaranteed to fail even if the
request is for `/'. As mentioned for H5G_namei(), the root
object can be retrieved with `/' or `/foo' (or equivalent
absolute or relative names).
H5G_insert()
------------
Understands files without directories and attempts to create
such files when there is only one object. The root symbol
table is created implicitly when necessary.
A root object can be given a name message by the caller and
then inserted with the name `/' or it can be inserted with
the name `/foo' in which case H5G_insert() will set the name
message to `foo'.
H5G_modify()
------------
Understands files without directories.
./src/H5Fprivate.h
Removed the root_type field from hdf5_file_t.
./src/H5Fprivate.h
./src/H5F.c
Removed H5F_root_type()
./src/H5Fpublic.h
Removed H5F_root_symtype_t.
./src/H5Oprivate.h
./src/H5O.c
Added H5O_remove() which is currently a no-op.
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./src/H5Aproto.h
./src/H5Bproto.h
./src/H5Cproto.h
./src/H5Dproto.h
./src/H5Eproto.h
./src/H5Fproto.h
./src/H5Gproto.h
./src/H5Hproto.h
./src/H5MFproto.h
./src/H5MMproto.h
./src/H5Mproto.h
./src/H5Oproto.h
./src/H5Pproto.h
./src/H5Tproto.h
./src/H5proto.h
These files were removed from the library and renamed by
changing `proto' to `public'.
./src/H5ACpublic.h NEW
./src/H5Apublic.h NEW
./src/H5Bpublic.h NEW
./src/H5Cpublic.h NEW
./src/H5Dpublic.h NEW
./src/H5Epublic.h NEW
./src/H5Fpublic.h NEW
./src/H5Gpublic.h NEW
./src/H5Hpublic.h NEW
./src/H5MFpublic.h NEW
./src/H5MMpublic.h NEW
./src/H5Mpublic.h NEW
./src/H5Opublic.h NEW
./src/H5Ppublic.h NEW
./src/H5Tpublic.h NEW
./src/H5public.h NEW
These files came from the old H5*proto.h files.
./src/Makefile
./src/Makefile.in NEW
Removed. Now generated automatically from Makefile.in by
running configure.
./src/h5oplat.h
./src/hdf5fort.h
./src/hdf5gen.h
./src/hdf5glob.h
./src/hdf5lims.h
./src/hdf5meta.h
./src/hdf5pabl.h
./src/hdf5plat.h
./src/hdf5port.h
./src/hdf5type.h
Removed. The contents of these files has moved to other
header files or source files depending on it's nature.
./src/H5.c
./src/H5A.c
./src/H5B.c
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5H.c
./src/H5M.c
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Ostab.c
./src/H5P.c
./src/H5T.c
Fixed include files. Moved some things from old headers into
these files.
./src/H5ACprivate.h
./src/H5Aprivate.h
./src/H5Bprivate.h
./src/H5Cprivate.h
./src/H5Dprivate.h
./src/H5Eprivate.h
./src/H5Fprivate.h
./src/H5Gprivate.h
./src/H5Hprivate.h
./src/H5MFprivate.h
./src/H5MMprivate.h
./src/H5Mprivate.h
./src/H5Oprivate.h
./src/H5Pprivate.h
./src/H5Tprivate.h
./src/H5private.h
./src/debug.c
Fixed include files.
./src/hdf5.h
This is now the top-level *PUBLIC* include file. It should
never appear in the library *.c files.
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./src/H5ACprivate.h
./src/H5ACproto.h
./src/H5Bproto.h
./src/H5Gproto.h
./src/H5Hproto.h
./src/H5MFprivate.h
./src/H5MFproto.h
./src/H5MM.c
./src/H5MMprivate.h
./src/H5MMproto.h
Changed my e-mail address.
./src/H5O.c NEW
./src/H5Onull.c NEW
./src/H5Ocont. NEW
./src/H5Ostab.c NEW
New functions for dealing with object headers. The H5O.c is
the generic stuff, and each particular message has a source
file for the specific stuff.
Use ./src/H5Ostab.c as a model for implementing other messages.
./src/Makefile
./src/test/Makefile
Added new files
./src/debug.c
Added debugging calls for object headers.
./src/H5B.c
./src/H5Bprivate.h
./src/H5Gnode.c
./src/H5MF.c
Changed my e-mail address.
Improved error handling.
./src/H5Eprivate.h
./src/H5Eproto.h
Added more error symbols
./src/H5F.c
Changed my e-mail address.
Used macros for sizeof offsets and lengths.
Added the interface initialization function to
H5F_block_read() and H5F_block_write().
Updated H5F_debug()
./src/H5Fprivate.h
Got rid of H5F_symbol_table_size(). Use H5G_SIZEOF_ENTRY()
instead.
Reformatted H5F_decode_offset() for readability.
./src/H5G.c
Changed my e-mail address.
Improved error handling.
Replaced not_implemented_yet__*() with real functions from
H5O.
./src/H5Gprivate.h
Changed `symtab' to `stab' to be consistent with other stuff.
./src/H5H.c
./src/H5Hprivate.h
Changed my e-mail address.
Improved error handling.
Added an extra argument to H5H_new() to indicate whether you
want a global heap or a local heap.
./src/hdf5gen.h
Added NELMTS()
Fixed FUNC_ENTER()
Rewrote FUNC_LEAVE() in terms of HRETURN().
./src/hdf5meta.h
Added `const' to the decode macros.
./src/hdf5pabl.h
Added PABLO_SAVE()
./test/testhdf5.c
./test/testhdf5.h
Added calls for object header testing.
./test/theap.c
Turned off some output.
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