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* Add maps to h5dsm_test.sh. Fix issues with maps implementation.Neil Fortner2017-05-111-0/+1
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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-67/+88
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| * [svn-r29612] Description:Quincey Koziol2016-04-031-1/+1
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-241-5/+19
| | | | | | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-16/+16
| |\ | | | | | | | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| | * [svn-r29066] - fixing some of the internal usage of dxpls.Mohamad Chaarawi2016-02-081-4/+8
| | | | | | | | | | | | - merge from trunk.
| * | [svn-r29076] Description:Quincey Koziol2016-02-101-4/+8
| |/ | | | | | | | | | | | | | | | | Normalize against the phdf5_metadata_opt branch, in preparation for merging it to trunk. Tested on: MacOSX/64 10.11.3 (amazon) w/serial, parallel, and production builds h5committest forthcoming
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-21/+21
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28916] Description:Quincey Koziol2016-01-151-36/+33
| | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28894] Description:Quincey Koziol2016-01-141-9/+17
| | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-1/+1
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28606] Description:Quincey Koziol2015-12-131-1/+1
| | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-32/+29
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-42/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27369] merge from trunk.Mohamad Chaarawi2015-07-101-3/+6
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| * [svn-r27292] Description:Quincey Koziol2015-06-271-3/+6
| | | | | | | | | | | | | | | | | | | | Bring 'fail if unknown always' object header message flag from the avoid_truncate branch, strengthen error checking for unknown messages, and try to catch object header code configurations at compile time (instead of runtime). Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27286] merge from trunk.Mohamad Chaarawi2015-06-261-18/+21
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| * [svn-r27237] Description:Quincey Koziol2015-06-181-18/+21
| | | | | | | | | | | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* | [svn-r27141] merge from trunk.Mohamad Chaarawi2015-06-031-2/+2
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-2/+2
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-7/+8
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| * [svn-r27045] Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-orderedDana Robinson2015-05-101-2/+2
| | | | | | | | | | | | the arguments to be in a more logical order. Tested on: h5committest
| * [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-6/+7
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-169/+100
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-16/+16
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-65/+44
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* | [svn-r25521] major rework of the internal setup of VOL plugins to make it moreMohamad Chaarawi2014-08-081-4/+3
| | | | | | | | | | | | | | symmetrical to VFDs and allow new functionality to be implemented later. + some Bug fixes
* | [svn-r25511] fix bug in native implementation of H5Oopen_by_idx.Mohamad Chaarawi2014-08-051-1/+2
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* | [svn-r25505] merge from trunk and fix some bugs due to 64_bit switch.Mohamad Chaarawi2014-08-011-4/+7
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| * [svn-r25504] fix ret_value in H5Oexists_by_name to be htri_t instead of ↵Mohamad Chaarawi2014-08-011-1/+1
| | | | | | | | hid_t. Bug exposed in VOL branch.
* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-11/+11
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25476] - fix error output in several places.Mohamad Chaarawi2014-07-231-3/+3
| | | | | | | | | | - uncomment tests to check error output in Makefiles. - fix bug in native implementation of H5Aiterate.
* | [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-17/+17
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* | [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-17/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* | [svn-r22623] merge from tunkMohamad Chaarawi2012-08-021-11/+11
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| * [svn-r22608] Description:Quincey Koziol2012-07-261-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
| * [svn-r22601] Purpose: Fix HDFFV-5853Neil Fortner2012-07-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When jumping out from between H5_BEGIN_TAG and H5_END_TAG macros using HGOTO_ERROR or HGOTO_DONE, the previous metadata tag is not reset on the dxpl. This could cause problems when, for example, calling H5Ocopy within an H5Literate callback. Added new HGOTO_ERROR_TAG and HGOTO_DONE_TAG macros which must be used in place of the above between H5_BEGIN_TAG and H5_END_TAG. Tested: jam, koala, ostrich (h5committest), durandal
* | [svn-r22565] change OH id registration to original way, and re-register the ↵Mohamad Chaarawi2012-07-121-20/+35
| | | | | | | | | | | | | | | | ID with the VOL info on the upper level (API and iteration/visit routines) - this fixes the bug exposed in H5Oopen with external log plugin update the private VL registration routine to take an app_ref update the datatype ID creation for the VOL to take an app_ref
* | [svn-r22554] remove the file_id from the H5F_t struct and add an id_exists ↵Mohamad Chaarawi2012-07-111-1/+1
| | | | | | | | instead
* | [svn-r22549] Mohamad Chaarawi2012-07-101-3/+0
| | | | | | | | | | | | | | | | | | | | move ref count management on the VOL struct inside the VLint code - H5Freopen still needs to be handled create the public interface for VOL callbacks: - unresolved issue with var_args update and create new API fapl calls to support stacking drivers: - need to add fapl copy callback fix a memory leak with registration of external plugins
* | [svn-r22523] - rework how IDs for VOL objects are createdMohamad Chaarawi2012-07-061-7/+24
| | | | | | | | | | - change how the vlose routine is registered with VOL IDs - some bug fixes
* | [svn-r22519] - many bug fixesMohamad Chaarawi2012-07-051-3/+7
| | | | | | | | - still some unresolved issues with named datatypes
* | [svn-r22511] - remove the internal file type and use the file ID created at ↵Mohamad Chaarawi2012-07-031-16/+16
| | | | | | | | | | | | | | the API level for the native implementation - work on fixing the named datatype issue.. still not resolved - branch still not stable and tests do not pass at this point
* | [svn-r22502] implement named datatypes solution in object headersMohamad Chaarawi2012-06-291-1/+2
| | | | | | | | modify datatype open and get_binary callbacks to be disjoint
* | [svn-r22501] change the interface callbacks for the VOL to use objects ↵Mohamad Chaarawi2012-06-281-30/+305
| | | | | | | | | | | | pointers and public VL structure instead of IDs. tests will fail now because of named datatypes.
* | [svn-r22457] rename location types for objects at the VOL levelMohamad Chaarawi2012-06-121-6/+6
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* | [svn-r22456] change all usage of lookup/free VOL callback in H5G,O,A and ↵Mohamad Chaarawi2012-06-121-34/+23
| | | | | | | | | | | | use the loc_param struct instead. update the native implementation
* | [svn-r22452] - remove nrefs paramMohamad Chaarawi2012-06-111-33/+15
| | | | | | | | | | | | | | | | - create a struct to hold parameters for object locations instead of calling into VOL to lookup and free object: * update the implementation for H5Oopen(_by_name/idx/ref) * H5Rderefence * H5Aopen(_by_name), H5Arename(_by_name) * other routines coming later
* | [svn-r22423] add link and object iterate callbacksMohamad Chaarawi2012-06-011-13/+10
| | | | | | | | update some deprecated routines to use VOL
* | [svn-r22417] rename the properties used for the VOL callbacks.Mohamad Chaarawi2012-05-291-2/+2
| | | | | | | | move them to the VOL public header.
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