src/H5Odrvinfo.c

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the files COPYING and Copyright.html.  COPYING can be found at the root   *
 * of the source code distribution tree; Copyright.html can be found at the  *
 * root level of an installed copy of the electronic HDF5 document set and   *
 * is linked from the top-level documents page.  It can also be found at     *
 * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
 * access to either file, you may request a copy from help@hdfgroup.org.     *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*
 * Programmer:  Robb Matzke <matzke@llnl.gov>
 *              Thursday, July 29, 1999
 *
 * Purpose:	This is the MPI-2 I/O driver.
 *
 */

/* Interface initialization */
#define H5_INTERFACE_INIT_FUNC	H5FD_mpio_init_interface


#include "H5private.h"		/* Generic Functions			*/
#include "H5ACprivate.h"	/* Metadata cache			*/
#include "H5Dprivate.h"		/* Dataset functions			*/
#include "H5Eprivate.h"		/* Error handling		  	*/
#include "H5Fprivate.h"		/* File access				*/
#include "H5FDprivate.h"	/* File drivers				*/
#include "H5FDmpi.h"            /* MPI-based file drivers		*/
#include "H5Iprivate.h"		/* IDs			  		*/
#include "H5MMprivate.h"	/* Memory management			*/
#include "H5Pprivate.h"         /* Property lists                       */

#ifdef H5_HAVE_PARALLEL

/*
 * The driver identification number, initialized at runtime if H5_HAVE_PARALLEL
 * is defined. This allows applications to still have the H5FD_MPIO
 * "constants" in their source code.
 */
static hid_t H5FD_MPIO_g = 0;

/*
 * The description of a file belonging to this driver.
 * The EOF value is only used just after the file is opened in order for the
 * library to determine whether the file is empty, truncated, or okay. The MPIO
 * driver doesn't bother to keep it updated since it's an expensive operation.
 */
typedef struct H5FD_mpio_t {
    H5FD_t	pub;		/*public stuff, must be first		*/
    MPI_File	f;		/*MPIO file handle			*/
    MPI_Comm	comm;		/*communicator				*/
    MPI_Info	info;		/*file information			*/
    int         mpi_rank;       /* This process's rank                  */
    int         mpi_size;       /* Total number of processes            */
    haddr_t	eof;		/*end-of-file marker			*/
    haddr_t	eoa;		/*end-of-address marker			*/
    haddr_t	last_eoa;	/* Last known end-of-address marker	*/
} H5FD_mpio_t;

/* Private Prototypes */

/* Callbacks */
static void *H5FD_mpio_fapl_get(H5FD_t *_file);
static void *H5FD_mpio_fapl_copy(const void *_old_fa);
static herr_t H5FD_mpio_fapl_free(void *_fa);
static H5FD_t *H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id,
			      haddr_t maxaddr);
static herr_t H5FD_mpio_close(H5FD_t *_file);
static herr_t H5FD_mpio_query(const H5FD_t *_f1, unsigned long *flags);
static haddr_t H5FD_mpio_get_eoa(const H5FD_t *_file, H5FD_mem_t type);
static herr_t H5FD_mpio_set_eoa(H5FD_t *_file, H5FD_mem_t type, haddr_t addr);
static haddr_t H5FD_mpio_get_eof(const H5FD_t *_file);
static herr_t  H5FD_mpio_get_handle(H5FD_t *_file, hid_t fapl, void** file_handle);
static herr_t H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr,
            size_t size, void *buf);
static herr_t H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr,
            size_t size, const void *buf);
static herr_t H5FD_mpio_flush(H5FD_t *_file, hid_t dxpl_id, unsigned closing);
static int H5FD_mpio_mpi_rank(const H5FD_t *_file);
static int H5FD_mpio_mpi_size(const H5FD_t *_file);
static MPI_Comm H5FD_mpio_communicator(const H5FD_t *_file);

/* MPIO-specific file access properties */
typedef struct H5FD_mpio_fapl_t {
    MPI_Comm		comm;		/*communicator			*/
    MPI_Info		info;		/*file information		*/
} H5FD_mpio_fapl_t;

/* The MPIO file driver information */
static const H5FD_class_mpi_t H5FD_mpio_g = {
    {   /* Start of superclass information */
    "mpio",					/*name			*/
    HADDR_MAX,					/*maxaddr		*/
    H5F_CLOSE_SEMI,				/* fc_degree		*/
    NULL,					/*sb_size		*/
    NULL,					/*sb_encode		*/
    NULL,					/*sb_decode		*/
    sizeof(H5FD_mpio_fapl_t),			/*fapl_size		*/
    H5FD_mpio_fapl_get,				/*fapl_get		*/
    H5FD_mpio_fapl_copy,			/*fapl_copy		*/
    H5FD_mpio_fapl_free, 			/*fapl_free		*/
    0,		                		/*dxpl_size		*/
    NULL,					/*dxpl_copy		*/
    NULL,					/*dxpl_free		*/
    H5FD_mpio_open,				/*open			*/
    H5FD_mpio_close,				/*close			*/
    NULL,					/*cmp			*/
    H5FD_mpio_query,		                /*query			*/
    NULL,					/*alloc			*/
    NULL,					/*free			*/
    H5FD_mpio_get_eoa,				/*get_eoa		*/
    H5FD_mpio_set_eoa, 				/*set_eoa		*/
    H5FD_mpio_get_eof,				/*get_eof		*/
    H5FD_mpio_get_handle,                       /*get_handle            */
    H5FD_mpio_read,				/*read			*/
    H5FD_mpio_write,				/*write			*/
    H5FD_mpio_flush,				/*flush			*/
    NULL,                                       /*lock                  */
    NULL,                                       /*unlock                */
    H5FD_FLMAP_SINGLE                           /*fl_map                */
    },  /* End of superclass information */
    H5FD_mpio_mpi_rank,                         /*get_rank              */
    H5FD_mpio_mpi_size,                         /*get_size              */
    H5FD_mpio_communicator                      /*get_comm              */
};

#ifdef H5FDmpio_DEBUG
/* Flags to control debug actions in H5Fmpio.
 * Meant to be indexed by characters.
 *
 * 'c' show result of MPI_Get_count after read
 * 'r' show read offset and size
 * 't' trace function entry and exit
 * 'w' show write offset and size
 */
static int H5FD_mpio_Debug[256] =
        { 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
          0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 };
#endif


/*--------------------------------------------------------------------------
NAME
   H5FD_mpio_init_interface -- Initialize interface-specific information
USAGE
    herr_t H5FD_mpio_init_interface()

RETURNS
    Non-negative on success/Negative on failure
DESCRIPTION
    Initializes any interface-specific data or routines.  (Just calls
    H5FD_mpio_init currently).

--------------------------------------------------------------------------*/
static herr_t
H5FD_mpio_init_interface(void)
{
    FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FD_mpio_init_interface)

    FUNC_LEAVE_NOAPI(H5FD_mpio_init())
} /* H5FD_mpio_init_interface() */


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_init
 *
 * Purpose:	Initialize this driver by registering the driver with the
 *		library.
 *
 * Return:	Success:	The driver ID for the mpio driver.
 *
 *		Failure:	Negative.
 *
 * Programmer:	Robb Matzke
 *              Thursday, August 5, 1999
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
hid_t
H5FD_mpio_init(void)
{
#ifdef H5FDmpio_DEBUG
    static int H5FD_mpio_Debug_inited=0;
#endif /* H5FDmpio_DEBUG */
    hid_t ret_value;        	/* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_init, FAIL)

    if (H5I_VFL!=H5I_get_type(H5FD_MPIO_g))
        H5FD_MPIO_g = H5FD_register((const H5FD_class_t *)&H5FD_mpio_g,sizeof(H5FD_class_mpi_t));

#ifdef H5FDmpio_DEBUG
    if (!H5FD_mpio_Debug_inited)
    {
	/* set debug mask */
	/* Should this be done in H5F global initialization instead of here? */
        const char *s = HDgetenv ("H5FD_mpio_Debug");
        if (s) {
	    while (*s){
		H5FD_mpio_Debug[(int)*s]++;
		s++;
	    }
        }
	H5FD_mpio_Debug_inited++;
    }
#endif /* H5FDmpio_DEBUG */

    /* Set return value */
    ret_value=H5FD_MPIO_g;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*---------------------------------------------------------------------------
 * Function:	H5FD_mpio_term
 *
 * Purpose:	Shut down the VFD
 *
 * Return:	<none>
 *
 * Programmer:  Quincey Koziol
 *              Friday, Jan 30, 2004
 *
 * Modification:
 *
 *---------------------------------------------------------------------------
 */
void
H5FD_mpio_term(void)
{
    FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FD_mpio_term)

    /* Reset VFL ID */
    H5FD_MPIO_g=0;

    FUNC_LEAVE_NOAPI_VOID
} /* end H5FD_mpio_term() */


/*-------------------------------------------------------------------------
 * Function:	H5Pset_fapl_mpio
 *
 * Purpose:	Store the user supplied MPIO communicator comm and info in
 *		the file access property list FAPL_ID which can then be used
 *		to create and/or open the file.  This function is available
 *		only in the parallel HDF5 library and is not collective.
 *
 *		comm is the MPI communicator to be used for file open as
 *		defined in MPI_FILE_OPEN of MPI-2. This function makes a
 *		duplicate of comm. Any modification to comm after this function
 *		call returns has no effect on the access property list.
 *
 *		info is the MPI Info object to be used for file open as
 *		defined in MPI_FILE_OPEN of MPI-2. This function makes a
 *		duplicate of info. Any modification to info after this
 *		function call returns has no effect on the access property
 *		list.
 *
 *              If fapl_id has previously set comm and info values, they
 *              will be replaced and the old communicator and Info object
 *              are freed.
 *
 * Return:	Success:	Non-negative
 *
 * 		Failure:	Negative
 *
 * Programmer:	Albert Cheng
 *		Feb 3, 1998
 *
 * Modifications:
 *		Robb Matzke, 1998-02-18
 *		Check all arguments before the property list is updated so we
 *		don't leave the property list in a bad state if something
 *		goes wrong.  Also, the property list data type changed to
 *		allow more generality so all the mpi-related stuff is in the
 *		`u.mpi' member.  The `access_mode' will contain only
 * 		mpi-related flags defined in H5Fpublic.h.
 *
 *		Albert Cheng, 1998-04-16
 *		Removed the ACCESS_MODE argument.  The access mode is changed
 *		to be controlled by data transfer property list during data
 *		read/write calls.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 *		Raymond Lu, 2001-10-23
 *		Changed the file access list to the new generic property
 *		list.
 *
 *		Albert Cheng, 2003-04-17
 *		Modified the description of the function that it now stores
 *		a duplicate of the communicator and INFO object.  Free the
 *		old duplicates if previously set.  (Work is actually done
 *		by H5P_set_driver.)
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info)
{
    H5FD_mpio_fapl_t	fa;
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_fapl_mpio, FAIL)
    H5TRACE3("e", "iMcMi", fapl_id, comm, info);

    if(fapl_id == H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a file access list")
    if(MPI_COMM_NULL == comm)
	HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a valid communicator")

    /* Initialize driver specific properties */
    fa.comm = comm;
    fa.info = info;

    /* duplication is done during driver setting. */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, &fa);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pget_fapl_mpio
 *
 * Purpose:	If the file access property list is set to the H5FD_MPIO
 *		driver then this function returns duplicates of the MPI
 *		communicator and Info object stored through the comm and
 *		info pointers.  It is the responsibility of the application
 *		to free the returned communicator and Info object.
 *
 * Return:	Success:	Non-negative with the communicator and
 *				Info object returned through the comm and
 *				info arguments if non-null. Since they are
 *				duplicates of the stored objects, future
 *				modifications to the access property list do
 *				not affect them and it is the responsibility
 *				of the application to free them.
 *
 * 		Failure:	Negative
 *
 * Programmer:	Robb Matzke
 *		Thursday, February 26, 1998
 *
 * Modifications:
 *
 *	        Albert Cheng, Apr 16, 1998
 *	        Removed the access_mode argument.  The access_mode is changed
 *	        to be controlled by data transfer property list during data
 *	        read/write calls.
 *
 *		Raymond Lu, 2001-10-23
 *		Changed the file access list to the new generic property
 *		list.
 *
 *		Albert Cheng, 2003-04-17
 *		Return duplicates of the stored communicator and Info object.
 *
 *-------------------------------------------------------------------------
 */
herr_t
H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm/*out*/, MPI_Info *info/*out*/)
{
    H5FD_mpio_fapl_t	*fa;
    H5P_genplist_t *plist;      /* Property list pointer */
    MPI_Comm	comm_tmp=MPI_COMM_NULL;
    int		mpi_code;		/* mpi return code */
    herr_t      ret_value=SUCCEED;      /* Return value */

    FUNC_ENTER_API(H5Pget_fapl_mpio, FAIL)
    H5TRACE3("e", "ixx", fapl_id, comm, info);

    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a file access list")
    if(H5FD_MPIO != H5P_get_driver(plist))
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "incorrect VFL driver")
    if(NULL == (fa = (H5FD_mpio_fapl_t *)H5P_get_driver_info(plist)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "bad VFL driver info")

    /* Store the duplicated communicator in a temporary variable for error */
    /* recovery in case the INFO duplication fails.  We cannot attempt to */
    /* the value into *comm yet since if MPI_Comm_dup fails, we will end  */
    /* up freeing whatever *comm holds and that could be invalid. */
    if (comm){
	if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(fa->comm, &comm_tmp)))
	    HMPI_GOTO_ERROR(FAIL, "MPI_Comm_dup failed", mpi_code)
    }

    if (info){
	if (MPI_INFO_NULL != fa->info){
	    if (MPI_SUCCESS != (mpi_code=MPI_Info_dup(fa->info, info)))
		HMPI_GOTO_ERROR(FAIL, "MPI_Info_dup failed", mpi_code)
	}else{
	    /* do not dup it */
	    *info = MPI_INFO_NULL;
	}
    }

    if (comm)
        *comm = comm_tmp;

done:
    if (FAIL==ret_value){
	/* need to free anything created here */
	if (comm_tmp != MPI_COMM_NULL)
	    MPI_Comm_free(&comm_tmp);
    }
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pset_dxpl_mpio
 *
 * Purpose:	Set the data transfer property list DXPL_ID to use transfer
 *		mode XFER_MODE. The property list can then be used to control
 *		the I/O transfer mode during data I/O operations. The valid
 *		transfer modes are:
 *
 * 		H5FD_MPIO_INDEPENDENT:
 *			Use independent I/O access (the default).
 *
 * 		H5FD_MPIO_COLLECTIVE:
 *			Use collective I/O access.
 *
 * Return:	Success:	Non-negative
 *
 * 		Failure:	Negative
 *
 * Programmer:	Albert Cheng
 *		April 2, 1998
 *
 * Modifications:
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_dxpl_mpio, FAIL)
    H5TRACE2("e", "iDt", dxpl_id, xfer_mode);

    if(dxpl_id==H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")
    if(H5FD_MPIO_INDEPENDENT != xfer_mode && H5FD_MPIO_COLLECTIVE != xfer_mode)
        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "incorrect xfer_mode")

    /* Set the transfer mode */
    if (H5P_set(plist,H5D_XFER_IO_XFER_MODE_NAME,&xfer_mode)<0)
        HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")

    /* Initialize driver-specific properties */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pget_dxpl_mpio
 *
 * Purpose:	Queries the transfer mode current set in the data transfer
 *		property list DXPL_ID. This is not collective.
 *
 * Return:	Success:	Non-negative, with the transfer mode returned
 *				through the XFER_MODE argument if it is
 *				non-null.
 *
 * 		Failure:	Negative
 *
 * Programmer:	Albert Cheng
 *		April 2, 1998
 *
 * Modifications:
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *-------------------------------------------------------------------------
 */
herr_t
H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode/*out*/)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t      ret_value=SUCCEED;       /* Return value */

    FUNC_ENTER_API(H5Pget_dxpl_mpio, FAIL)
    H5TRACE2("e", "ix", dxpl_id, xfer_mode);

    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")
    if(H5FD_MPIO != H5P_get_driver(plist))
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "incorrect VFL driver")

    /* Get the transfer mode */
    if (xfer_mode)
        if (H5P_get(plist,H5D_XFER_IO_XFER_MODE_NAME,xfer_mode)<0)
            HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to get value")

done:
    FUNC_LEAVE_API(ret_value)
}

/*-------------------------------------------------------------------------
 * Function:	H5Pset_dxpl_mpio_collective_opt

Purpose:
	To set a flag to choose linked chunk IO or multi-chunk IO without
        involving decision-making inside HDF5

Description:
        The library will do linked chunk IO or multi-chunk IO without
        involving communications for decision-making process.
        The library won't behave as it asks for only when we find
        that the low-level MPI-IO package doesn't support this.

Parameters: 
        hid_t dxpl_id	      		in: Data transfer property list identifier
	H5FD_mpio_chunk_opt_t   	in: The optimization flag for linked chunk IO
                                            or multi-chunk IO.
                                                

Returns: 
Returns a non-negative value if successful. Otherwise returns a negative value. 
*
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_dxpl_mpio_collective_opt, FAIL)
    H5TRACE2("e", "iDc", dxpl_id, opt_mode);

    if(dxpl_id == H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")

    /* Set the transfer mode */
    if (H5P_set(plist,H5D_XFER_MPIO_COLLECTIVE_OPT_NAME,&opt_mode)<0)
        HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")

    /* Initialize driver-specific properties */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pset_dxpl_mpio_chunk_opt

Purpose:
	To set a flag to choose linked chunk IO or multi-chunk IO without
        involving decision-making inside HDF5

Description:
        The library will do linked chunk IO or multi-chunk IO without
        involving communications for decision-making process.
        The library won't behave as it asks for only when we find
        that the low-level MPI-IO package doesn't support this.

Parameters: 
        hid_t dxpl_id	      		in: Data transfer property list identifier
	H5FD_mpio_chunk_opt_t   	in: The optimization flag for linked chunk IO
                                            or multi-chunk IO.
                                                

Returns: 
Returns a non-negative value if successful. Otherwise returns a negative value. 
*
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_dxpl_mpio_chunk_opt, FAIL)
    H5TRACE2("e", "iDh", dxpl_id, opt_mode);

    if(dxpl_id == H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")

    /* Set the transfer mode */
    if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_HARD_NAME,&opt_mode)<0)
        HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")

    /* Initialize driver-specific properties */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pset_dxpl_mpio_chunk_opt_num

Purpose:
	To set a threshold for doing linked chunk IO

Description:
        If the number is greater than the threshold set by the user, 
        the library will do linked chunk IO; otherwise, IO will be done for every chunk.

Parameters: 
        hid_t dxpl_id	      		in: Data transfer property list identifier
	unsigned num_proc_per_chunk	in: the threshold of the average number of chunks selected by each process 

Returns: 
Returns a non-negative value if successful. Otherwise returns a negative value. 
*
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_dxpl_mpio_chunk_opt_num, FAIL)
    H5TRACE2("e", "iIu", dxpl_id, num_chunk_per_proc);

    if(dxpl_id == H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")

    /* Set the transfer mode */
    if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_NUM_NAME,&num_chunk_per_proc)<0)
        HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")

    /* Initialize driver-specific properties */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5Pset_dxpl_mpio_chunk_opt_ratio

Purpose:
	To set a threshold for doing collective IO for each chunk
Description:
	The library will calculate the percentage of the number of process holding selections at each chunk. If that percentage of number of process in the individual chunk is greater than the threshold set by the user, the library will do collective chunk IO for this chunk; otherwise, independent IO will be done for this chunk.
Parameters: 
	hid_t dxpl_id	         				
		in: Data transfer property list identifier
	unsigned percent_num_proc_per_chunk	
		in: the threshold of the percentage of the number of process holding selections per chunk
Returns: 
Returns a non-negative value if successful. Otherwise returns a negative value. 


*
 *-------------------------------------------------------------------------
 */
herr_t
H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk)
{
    H5P_genplist_t *plist;      /* Property list pointer */
    herr_t ret_value;

    FUNC_ENTER_API(H5Pset_dxpl_mpio_chunk_opt_ratio, FAIL)
    H5TRACE2("e", "iIu", dxpl_id, percent_num_proc_per_chunk);

    if(dxpl_id == H5P_DEFAULT)
        HGOTO_ERROR(H5E_PLIST, H5E_BADVALUE, FAIL, "can't set values in default property list")

    /* Check arguments */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(dxpl_id, H5P_DATASET_XFER)))
        HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dxpl")

    /* Set the transfer mode */
    if (H5P_set(plist,H5D_XFER_MPIO_CHUNK_OPT_RATIO_NAME,&percent_num_proc_per_chunk)<0)
        HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "unable to set value")

    /* Initialize driver-specific properties */
    ret_value= H5P_set_driver(plist, H5FD_MPIO, NULL);

done:
    FUNC_LEAVE_API(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_fapl_get
 *
 * Purpose:	Returns a file access property list which could be used to
 *		create another file the same as this one.
 *
 * Return:	Success:	Ptr to new file access property list with all
 *				fields copied from the file pointer.
 *
 *		Failure:	NULL
 *
 * Programmer:	Robb Matzke
 *              Friday, August 13, 1999
 *
 * Modifications:
 * 		Albert Cheng, 2003-04-17
 * 		Duplicate the communicator and Info object so that the new
 * 		property list is insulated from the old one.
 *-------------------------------------------------------------------------
 */
static void *
H5FD_mpio_fapl_get(H5FD_t *_file)
{
    H5FD_mpio_t		*file = (H5FD_mpio_t*)_file;
    H5FD_mpio_fapl_t	*fa = NULL;
    void      *ret_value;       /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_fapl_get, NULL)

    HDassert(file);
    HDassert(H5FD_MPIO == file->pub.driver_id);

    if(NULL == (fa = (H5FD_mpio_fapl_t *)H5MM_calloc(sizeof(H5FD_mpio_fapl_t))))
        HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")

    /* Duplicate communicator and Info object. */
    if(FAIL == H5FD_mpi_comm_info_dup(file->comm, file->info, &fa->comm, &fa->info))
	HGOTO_ERROR(H5E_INTERNAL, H5E_CANTCOPY, NULL, "Communicator/Info duplicate failed")

    /* Set return value */
    ret_value = fa;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_fapl_copy
 *
 * Purpose:	Copies the mpio-specific file access properties.
 *
 * Return:	Success:	Ptr to a new property list
 *
 *		Failure:	NULL
 *
 * Programmer:	Albert Cheng
 *              Jan  8, 2003
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static void *
H5FD_mpio_fapl_copy(const void *_old_fa)
{
    void		*ret_value = NULL;
    const H5FD_mpio_fapl_t *old_fa = (const H5FD_mpio_fapl_t*)_old_fa;
    H5FD_mpio_fapl_t	*new_fa = NULL;

    FUNC_ENTER_NOAPI(H5FD_mpio_fapl_copy, NULL)
#ifdef H5FDmpio_DEBUG
if (H5FD_mpio_Debug[(int)'t'])
fprintf(stderr, "enter H5FD_mpio_fapl_copy\n");
#endif

    if(NULL == (new_fa = (H5FD_mpio_fapl_t *)H5MM_malloc(sizeof(H5FD_mpio_fapl_t))))
        HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")

    /* Copy the general information */
    HDmemcpy(new_fa, old_fa, sizeof(H5FD_mpio_fapl_t));

    /* Duplicate communicator and Info object. */
    if(FAIL == H5FD_mpi_comm_info_dup(old_fa->comm, old_fa->info, &new_fa->comm, &new_fa->info))
	HGOTO_ERROR(H5E_INTERNAL, H5E_CANTCOPY, NULL, "Communicator/Info duplicate failed")
    ret_value = new_fa;

done:
    if (NULL == ret_value){
	/* cleanup */
	if (new_fa)
	    H5MM_xfree(new_fa);
    }

#ifdef H5FDmpio_DEBUG
if (H5FD_mpio_Debug[(int)'t'])
fprintf(stderr, "leaving H5FD_mpio_fapl_copy\n");
#endif
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpio_fapl_copy() */


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_fapl_free
 *
 * Purpose:	Frees the mpio-specific file access properties.
 *
 * Return:	Success:	0
 *
 *		Failure:	-1
 *
 * Programmer:	Albert Cheng
 *              Jan  8, 2003
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_fapl_free(void *_fa)
{
    herr_t		ret_value = SUCCEED;
    H5FD_mpio_fapl_t	*fa = (H5FD_mpio_fapl_t*)_fa;

    FUNC_ENTER_NOAPI(H5FD_mpio_fapl_free, FAIL)
#ifdef H5FDmpio_DEBUG
if (H5FD_mpio_Debug[(int)'t'])
fprintf(stderr, "in H5FD_mpio_fapl_free\n");
#endif
    assert(fa);

    /* Free the internal communicator and INFO object */
    assert(MPI_COMM_NULL!=fa->comm);
    H5FD_mpi_comm_info_free(&fa->comm, &fa->info);
    H5MM_xfree(fa);

done:
#ifdef H5FDmpio_DEBUG
if (H5FD_mpio_Debug[(int)'t'])
fprintf(stderr, "leaving H5FD_mpio_fapl_free\n");
#endif
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpio_fapl_free() */


/*-------------------------------------------------------------------------
 * Function:    H5FD_mpio_open
 *
 * Purpose:     Opens a file with name NAME.  The FLAGS are a bit field with
 *		purpose similar to the second argument of open(2) and which
 *		are defined in H5Fpublic.h. The file access property list
 *		FAPL_ID contains the properties driver properties and MAXADDR
 *		is the largest address which this file will be expected to
 *		access.  This is collective.
 *
 * Return:      Success:        A new file pointer.
 *
 *              Failure:        NULL
 *
 * Programmer:
 *              January 30, 1998
 *
 * Modifications:
 * 		Robb Matzke, 1998-02-18
 *		Added the ACCESS_PARMS argument.  Moved some error checking
 *		here from elsewhere.
 *
 *      	rky, 1998-01-11
 *      	Added H5FD_mpio_Debug debug flags controlled by MPI_Info.
 *
 *      	rky, 1998-08-28
 *		Init flag controlling redundant metadata writes to disk.
 *
 *      	rky, 1998-12-07
 *		Added barrier after MPI_File_set_size to prevent race
 *		condition -- subsequent writes were being truncated, causing
 *		holes in file.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 *      	rky & ppw, 1999-11-07
 *		Modified "H5FD_mpio_open" so that file-truncation is
 *              avoided for brand-new files (with zero filesize).
 *
 * 		Albert Cheng, 2003-04-17
 * 		Duplicate the communicator and Info object so that file is
 * 		insulated from the old one.
 *-------------------------------------------------------------------------
 */
static H5FD_t *
H5FD_mpio_open(const char *name, unsigned flags, hid_t fapl_id,
	       haddr_t UNUSED maxaddr)
{
    H5FD_mpio_t			*file=NULL;
    MPI_File			fh;
    unsigned                    file_opened=0;  /* Flag to indicate that the file was successfully opened */
    int				mpi_amode;
    int				mpi_rank;       /* MPI rank of this process */
    int				mpi_size;       /* Total number of MPI processes */
    int				mpi_code;	/* mpi return code */
    MPI_Offset			size;
    const H5FD_mpio_fapl_t	*fa=NULL;
    H5FD_mpio_fapl_t		_fa;
    H5P_genplist_t *plist;      /* Property list pointer */
    MPI_Comm                    comm_dup=MPI_COMM_NULL;
    MPI_Info                    info_dup=MPI_INFO_NULL;
    H5FD_t			*ret_value;     /* Return value */
#ifndef H5_HAVE_MPI_GET_SIZE
    struct stat                 stat_buf;
#endif
 
    FUNC_ENTER_NOAPI(H5FD_mpio_open, NULL)

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t']) {
    	fprintf(stdout, "Entering H5FD_mpio_open(name=\"%s\", flags=0x%x, "
		"fapl_id=%d, maxaddr=%lu)\n", name, flags, (int)fapl_id, (unsigned long)maxaddr);
    }
#endif

    /* Obtain a pointer to mpio-specific file access properties */
    if(NULL == (plist = (H5P_genplist_t *)H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
        HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list")
    if(H5P_FILE_ACCESS_DEFAULT == fapl_id || H5FD_MPIO != H5P_get_driver(plist)) {
	_fa.comm = MPI_COMM_SELF; /*default*/
	_fa.info = MPI_INFO_NULL; /*default*/
	fa = &_fa;
    } else {
	fa = (const H5FD_mpio_fapl_t *)H5P_get_driver_info(plist);
	assert(fa);
    }

    /* Duplicate communicator and Info object for use by this file. */
    if (FAIL==H5FD_mpi_comm_info_dup(fa->comm, fa->info, &comm_dup, &info_dup))
	HGOTO_ERROR(H5E_INTERNAL, H5E_CANTCOPY, NULL, "Communicator/Info duplicate failed")

    /* convert HDF5 flags to MPI-IO flags */
    /* some combinations are illegal; let MPI-IO figure it out */
    mpi_amode  = (flags&H5F_ACC_RDWR) ? MPI_MODE_RDWR : MPI_MODE_RDONLY;
    if (flags&H5F_ACC_CREAT)	mpi_amode |= MPI_MODE_CREATE;
    if (flags&H5F_ACC_EXCL)	mpi_amode |= MPI_MODE_EXCL;

#ifdef H5FDmpio_DEBUG
    /* Check for debug commands in the info parameter */
    {
	char debug_str[128];
        int flag, i;
        if (MPI_INFO_NULL != info_dup) {
            /*OKAY: CAST DISCARDS CONST*/
            MPI_Info_get(fa->info, (char *)H5F_MPIO_DEBUG_KEY, 127, debug_str, &flag);
            if (flag) {
                fprintf(stdout, "H5FD_mpio debug flags=%s\n", debug_str );
                for (i=0;
                     debug_str[i]/*end of string*/ && i<128/*just in case*/;
                     ++i) {
                    H5FD_mpio_Debug[(int)debug_str[i]] = 1;
                }
            }
        }
    }
#endif

    /*OKAY: CAST DISCARDS CONST*/
    if(MPI_SUCCESS != (mpi_code = MPI_File_open(comm_dup, (char*)name, mpi_amode, info_dup, &fh)))
        HMPI_GOTO_ERROR(NULL, "MPI_File_open failed", mpi_code)
    file_opened=1;

    /* Get the MPI rank of this process and the total number of processes */
    if (MPI_SUCCESS != (mpi_code=MPI_Comm_rank (comm_dup, &mpi_rank)))
        HMPI_GOTO_ERROR(NULL, "MPI_Comm_rank failed", mpi_code)
    if (MPI_SUCCESS != (mpi_code=MPI_Comm_size (comm_dup, &mpi_size)))
        HMPI_GOTO_ERROR(NULL, "MPI_Comm_size failed", mpi_code)

    /* Build the return value and initialize it */
    if(NULL == (file = (H5FD_mpio_t *)H5MM_calloc(sizeof(H5FD_mpio_t))))
        HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
    file->f = fh;
    file->comm = comm_dup;
    file->info = info_dup;
    file->mpi_rank = mpi_rank;
    file->mpi_size = mpi_size;

    /* Only processor p0 will get the filesize and broadcast it. */
    if (mpi_rank == 0) {
        /* Get current file size.  If MPI_File_get_size is disabled in configuration
         * because it doesn't return correct value (SGI Altix Propack 4), 
         * use stat to get the file size. */
#ifdef H5_HAVE_MPI_GET_SIZE
        if (MPI_SUCCESS != (mpi_code=MPI_File_get_size(fh, &size)))
            HMPI_GOTO_ERROR(NULL, "MPI_File_get_size failed", mpi_code)
#else
        if((mpi_code=HDstat(name, &stat_buf))<0)
            HMPI_GOTO_ERROR(NULL, "stat failed", mpi_code)
        /* Hopefully this casting is safe */
        size = (MPI_Offset)(stat_buf.st_size);
#endif
    } /* end if */

    /* Broadcast file size */
    if(MPI_SUCCESS != (mpi_code = MPI_Bcast(&size, (int)sizeof(MPI_Offset), MPI_BYTE, 0, comm_dup)))
        HMPI_GOTO_ERROR(NULL, "MPI_Bcast failed", mpi_code)

    /* Determine if the file should be truncated */
    if(size && (flags & H5F_ACC_TRUNC)) {
        if (MPI_SUCCESS != (mpi_code=MPI_File_set_size(fh, (MPI_Offset)0)))
            HMPI_GOTO_ERROR(NULL, "MPI_File_set_size failed", mpi_code)

        /* Don't let any proc return until all have truncated the file. */
        if (MPI_SUCCESS!= (mpi_code=MPI_Barrier(comm_dup)))
            HMPI_GOTO_ERROR(NULL, "MPI_Barrier failed", mpi_code)

        /* File is zero size now */
        size = 0;
    } /* end if */

    /* Set the size of the file (from library's perspective) */
    file->eof = H5FD_mpi_MPIOff_to_haddr(size);

    /* Set return value */
    ret_value=(H5FD_t*)file;

done:
    if(ret_value==NULL) {
        if(file_opened)
            MPI_File_close(&fh);
	if (MPI_COMM_NULL != comm_dup)
	    MPI_Comm_free(&comm_dup);
	if (MPI_INFO_NULL != info_dup)
	    MPI_Info_free(&info_dup);
	if (file)
	    H5MM_xfree(file);
    } /* end if */

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
        fprintf(stdout, "Leaving H5FD_mpio_open\n" );
#endif
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:    H5FD_mpio_close
 *
 * Purpose:     Closes a file.  This is collective.
 *
 * Return:      Success:	Non-negative
 *
 * 		Failure:	Negative
 *
 * Programmer:  Unknown
 *              January 30, 1998
 *
 * Modifications:
 * 		Robb Matzke, 1998-02-18
 *		Added the ACCESS_PARMS argument.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 * 		Albert Cheng, 2003-04-17
 *		Free the communicator stored.
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_close(H5FD_t *_file)
{
    H5FD_mpio_t	*file = (H5FD_mpio_t*)_file;
    int		mpi_code;	        /* MPI return code */
    herr_t      ret_value=SUCCEED;      /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_close, FAIL)

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Entering H5FD_mpio_close\n");
#endif
    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* MPI_File_close sets argument to MPI_FILE_NULL */
    if (MPI_SUCCESS != (mpi_code=MPI_File_close(&(file->f)/*in,out*/)))
        HMPI_GOTO_ERROR(FAIL, "MPI_File_close failed", mpi_code)

    /* Clean up other stuff */
    H5FD_mpi_comm_info_free(&file->comm, &file->info);
    H5MM_xfree(file);

done:
#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Leaving H5FD_mpio_close\n");
#endif
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_query
 *
 * Purpose:	Set the flags that this VFL driver is capable of supporting.
 *              (listed in H5FDpublic.h)
 *
 * Return:	Success:	non-negative
 *
 *		Failure:	negative
 *
 * Programmer:	Quincey Koziol
 *              Friday, August 25, 2000
 *
 * Modifications:
 *
 *		John Mainzer -- 9/21/05
 *		Modified code to turn off the
 *		H5FD_FEAT_ACCUMULATE_METADATA_WRITE flag.
 *              With the movement of
 *		all cache writes to process 0, this flag has become
 *		problematic in PHDF5.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_query(const H5FD_t UNUSED *_file, unsigned long *flags /* out */)
{
    herr_t ret_value=SUCCEED;

    FUNC_ENTER_NOAPI(H5FD_mpio_query, FAIL)

    /* Set the VFL feature flags that this driver supports */
    if(flags) {
        *flags=0;
        *flags|=H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */
        *flags|=H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */
    } /* end if */

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_get_eoa
 *
 * Purpose:	Gets the end-of-address marker for the file. The EOA marker
 *		is the first address past the last byte allocated in the
 *		format address space.
 *
 * Return:	Success:	The end-of-address marker.
 *
 *		Failure:	HADDR_UNDEF
 *
 * Programmer:	Robb Matzke
 *              Friday, August  6, 1999
 *
 * Modifications:
 *              Raymond Lu
 *              21 Dec. 2006
 *              Added the parameter TYPE.  It's only used for MULTI driver.
 *
 *-------------------------------------------------------------------------
 */
static haddr_t
H5FD_mpio_get_eoa(const H5FD_t *_file, H5FD_mem_t UNUSED type)
{
    const H5FD_mpio_t	*file = (const H5FD_mpio_t*)_file;
    haddr_t ret_value;          /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_get_eoa, HADDR_UNDEF)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Set return value */
    ret_value=file->eoa;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_set_eoa
 *
 * Purpose:	Set the end-of-address marker for the file. This function is
 *		called shortly after an existing HDF5 file is opened in order
 *		to tell the driver where the end of the HDF5 data is located.
 *
 * Return:	Success:	0
 *
 *		Failure:	-1
 *
 * Programmer:	Robb Matzke
 *              Friday, August 6, 1999
 *
 * Modifications:
 *              Raymond Lu
 *              21 Dec. 2006
 *              Added the parameter TYPE.  It's only used for MULTI driver.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_set_eoa(H5FD_t *_file, H5FD_mem_t UNUSED type, haddr_t addr)
{
    H5FD_mpio_t	*file = (H5FD_mpio_t*)_file;
    herr_t ret_value=SUCCEED;   /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_set_eoa, FAIL)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    file->eoa = addr;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_get_eof
 *
 * Purpose:	Gets the end-of-file marker for the file. The EOF marker
 *		is the real size of the file.
 *
 *		The MPIO driver doesn't bother keeping this field updated
 *		since that's a relatively expensive operation. Fortunately
 *		the library only needs the EOF just after the file is opened
 *		in order to determine whether the file is empty, truncated,
 *		or okay.  Therefore, any MPIO I/O function will set its value
 *		to HADDR_UNDEF which is the error return value of this
 *		function.
 *
 *              Keeping the EOF updated (during write calls) is expensive
 *              because any process may extend the physical end of the
 *              file. -QAK
 *
 * Return:	Success:	The end-of-address marker.
 *
 *		Failure:	HADDR_UNDEF
 *
 * Programmer:	Robb Matzke
 *              Friday, August  6, 1999
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static haddr_t
H5FD_mpio_get_eof(const H5FD_t *_file)
{
    const H5FD_mpio_t	*file = (const H5FD_mpio_t*)_file;
    haddr_t ret_value;          /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_get_eof, HADDR_UNDEF)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Set return value */
    ret_value=file->eof;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:       H5FD_mpio_get_handle
 *
 * Purpose:        Returns the file handle of MPIO file driver.
 *
 * Returns:        Non-negative if succeed or negative if fails.
 *
 * Programmer:     Raymond Lu
 *                 Sept. 16, 2002
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
*/
static herr_t
H5FD_mpio_get_handle(H5FD_t *_file, hid_t UNUSED fapl, void** file_handle)
{
    H5FD_mpio_t         *file = (H5FD_mpio_t *)_file;
    herr_t              ret_value = SUCCEED;

    FUNC_ENTER_NOAPI(H5FD_mpio_get_handle, FAIL)

    if(!file_handle)
        HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file handle not valid")

    *file_handle = &(file->f);

done:
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_read
 *
 * Purpose:	Reads SIZE bytes of data from FILE beginning at address ADDR
 *		into buffer BUF according to data transfer properties in
 *		DXPL_ID using potentially complex file and buffer types to
 *		effect the transfer.
 *
 *		Reading past the end of the MPI file returns zeros instead of
 *		failing.  MPI is able to coalesce requests from different
 *		processes (collective or independent).
 *
 * Return:	Success:	Zero. Result is stored in caller-supplied
 *				buffer BUF.
 *
 *		Failure:	-1, Contents of buffer BUF are undefined.
 *
 * Programmer:	rky, 1998-01-30
 *
 * Modifications:
 * 		Robb Matzke, 1998-02-18
 *		Added the ACCESS_PARMS argument.
 *
 * 		rky, 1998-04-10
 *		Call independent or collective MPI read, based on
 *		ACCESS_PARMS.
 *
 * 		Albert Cheng, 1998-06-01
 *		Added XFER_MODE to control independent or collective MPI
 *		read.
 *
 * 		rky, 1998-08-16
 *		Use BTYPE, FTYPE, and DISP from access parms. The guts of
 *		H5FD_mpio_read and H5FD_mpio_write should be replaced by a
 *		single dual-purpose routine.
 *
 * 		Robb Matzke, 1999-04-21
 *		Changed XFER_MODE to XFER_PARMS for all H5F_*_read()
 *		callbacks.
 *
 * 		Robb Matzke, 1999-07-28
 *		The ADDR argument is passed by value.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 *		Quincey Koziol,  2002-05-14
 *		Only call MPI_Get_count if we can use MPI_BYTE for the MPI type
 *              for the I/O transfer.  Someday we might include code to decode
 *              the MPI type used for more complicated transfers and call
 *              MPI_Get_count all the time.
 *
 *              Quincey Koziol - 2002/06/17
 *              Removed 'disp' parameter from H5FD_mpio_setup routine and use
 *              the address of the dataset in MPI_File_set_view() calls, as
 *              necessary.
 *
 *              Quincey Koziol - 2002/06/24
 *              Removed "lazy" MPI_File_set_view() calls, since they would fail
 *              if the first I/O was a collective I/O using MPI derived types
 *              and the next I/O was an independent I/O.
 *
 *              Quincey Koziol - 2003/10/22-31
 *              Restructured code massively, straightening out logic and finally
 *              getting the bytes_read stuff working.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_read(H5FD_t *_file, H5FD_mem_t UNUSED type, hid_t dxpl_id, haddr_t addr, size_t size,
	       void *buf/*out*/)
{
    H5FD_mpio_t			*file = (H5FD_mpio_t*)_file;
    MPI_Offset			mpi_off;
    MPI_Status  		mpi_stat;
    int				mpi_code;	/* mpi return code */
    MPI_Datatype		buf_type=MPI_BYTE;      /* MPI description of the selection in memory */
    int         		size_i;         /* Integer copy of 'size' to read */
    int         		bytes_read;     /* Number of bytes read in */
    int         		n;
    int                         type_size;      /* MPI datatype used for I/O's size */
    int                         io_size;        /* Actual number of bytes requested */
    H5P_genplist_t              *plist;      /* Property list pointer */
    unsigned			use_view_this_time=0;
    herr_t              	ret_value=SUCCEED;

    FUNC_ENTER_NOAPI(H5FD_mpio_read, FAIL)

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Entering H5FD_mpio_read\n" );
#endif
    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);
    /* Make certain we have the correct type of property list */
    assert(H5I_GENPROP_LST==H5I_get_type(dxpl_id));
    assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
    assert(buf);

    /* Portably initialize MPI status variable */
    HDmemset(&mpi_stat,0,sizeof(MPI_Status));

    /* some numeric conversions */
    if (H5FD_mpi_haddr_to_MPIOff(addr, &mpi_off/*out*/)<0)
        HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from haddr to MPI off")
    size_i = (int)size;
    if ((hsize_t)size_i != size)
        HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from size to size_i")

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'r'])
        fprintf(stdout, "in H5FD_mpio_read  mpi_off=%ld  size_i=%d\n",
		(long)mpi_off, size_i );
#endif

    /* Only look for MPI views for raw data transfers */
    if(type==H5FD_MEM_DRAW) {
        H5FD_mpio_xfer_t            xfer_mode;   /* I/O tranfer mode */

        /* Obtain the data transfer properties */
        if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
            HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list")
        xfer_mode = (H5FD_mpio_xfer_t)H5P_peek_unsigned(plist, H5D_XFER_IO_XFER_MODE_NAME);

        /*
         * Set up for a fancy xfer using complex types, or single byte block. We
         * wouldn't need to rely on the use_view field if MPI semantics allowed
         * us to test that btype=ftype=MPI_BYTE (or even MPI_TYPE_NULL, which
         * could mean "use MPI_BYTE" by convention).
         */
        if(xfer_mode==H5FD_MPIO_COLLECTIVE) {
            MPI_Datatype		file_type;

            /* Remember that views are used */
            use_view_this_time=TRUE;

            /* prepare for a full-blown xfer using btype, ftype, and disp */
            if(H5P_get(plist,H5FD_MPI_XFER_MEM_MPI_TYPE_NAME,&buf_type)<0)
                HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property")
            if(H5P_get(plist,H5FD_MPI_XFER_FILE_MPI_TYPE_NAME,&file_type)<0)
                HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property")

            /*
             * Set the file view when we are using MPI derived types
             */
            /*OKAY: CAST DISCARDS CONST QUALIFIER*/
            if (MPI_SUCCESS != (mpi_code=MPI_File_set_view(file->f, mpi_off, MPI_BYTE, file_type, H5FD_mpi_native_g,  file->info)))
                HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)

            /* When using types, use the address as the displacement for
             * MPI_File_set_view and reset the address for the read to zero
             */
            mpi_off=0;
        } /* end if */
    } /* end if */

    /* Read the data. */
    if (use_view_this_time) {
       H5FD_mpio_collective_opt_t coll_opt_mode;
       H5FD_mpio_collective_opt_t xfer_opt_mode;
#ifdef H5FDmpio_DEBUG
	if (H5FD_mpio_Debug[(int)'t'])
	    fprintf(stdout, "H5FD_mpio_read: using MPIO collective mode\n");
#endif
        /* Peek the collective_opt property to check whether the application wants to do IO individually. */
        coll_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist, H5D_XFER_MPIO_COLLECTIVE_OPT_NAME);

       /* Peek the xfer_opt_mode property to check whether the application wants to do IO individually. */
        xfer_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist, H5D_XFER_IO_XFER_OPT_MODE_NAME);
     
        if(coll_opt_mode == H5FD_MPIO_COLLECTIVE_IO && xfer_opt_mode == H5FD_MPIO_COLLECTIVE_IO) {
#ifdef H5FDmpio_DEBUG
        if (H5FD_mpio_Debug[(int)'t'])
            fprintf(stdout, "H5FD_mpio_read: doing MPI collective IO\n");
#endif
/* Temporarily change to read_at_all 
        if (MPI_SUCCESS!= (mpi_code=MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat )))*/
        if (MPI_SUCCESS!= (mpi_code=MPI_File_read_at_all(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat )))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at_all failed", mpi_code)
        }
        else {
#ifdef H5FDmpio_DEBUG
        if (H5FD_mpio_Debug[(int)'t'])
            fprintf(stdout, "H5FD_mpio_read: doing MPI independent IO\n");
#endif

        if (MPI_SUCCESS!= (mpi_code=MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat )))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code)
        }
 
        /*
         * Reset the file view when we used MPI derived types
         */
        /*OKAY: CAST DISCARDS CONST QUALIFIER*/
        if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, H5FD_mpi_native_g, file->info)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)
    } else {
        if(MPI_SUCCESS != (mpi_code = MPI_File_read_at(file->f, mpi_off, buf, size_i, buf_type, &mpi_stat)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code)
    }

    /* How many bytes were actually read? */
    /* [This works because the "basic elements" we use for all our MPI derived
     *  types are MPI_BYTE.  We should be using the 'buf_type' for the MPI
     *  datatype in this call though... (We aren't because using it causes
     *  the LANL "qsc" machine to dump core - 12/19/03) - QAK]
     */
    if (MPI_SUCCESS != (mpi_code=MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_read)))
        HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code)

    /* Get the type's size */
    if (MPI_SUCCESS != (mpi_code=MPI_Type_size(buf_type,&type_size)))
        HMPI_GOTO_ERROR(FAIL, "MPI_Type_size failed", mpi_code)

    /* Compute the actual number of bytes requested */
    io_size=type_size*size_i;

    /* Check for read failure */
    if (bytes_read<0 || bytes_read>io_size)
        HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed")

    /*
     * This gives us zeroes beyond end of physical MPI file.
     */
    if ((n=(io_size-bytes_read)) > 0)
        HDmemset((char*)buf+bytes_read, 0, (size_t)n);

done:
#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Leaving H5FD_mpio_read\n" );
#endif

    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_write
 *
 * Purpose:	Writes SIZE bytes of data to FILE beginning at address ADDR
 *		from buffer BUF according to data transfer properties in
 *		DXPL_ID using potentially complex file and buffer types to
 *		effect the transfer.
 *
 *		MPI is able to coalesce requests from different processes
 *		(collective and independent).
 *
 * Return:	Success:	Zero. USE_TYPES and OLD_USE_TYPES in the
 *				access params are altered.
 *
 *		Failure:	-1, USE_TYPES and OLD_USE_TYPES in the
 *				access params may be altered.
 *
 * Programmer:	Unknown
 *              January 30, 1998
 *
 * Modifications:
 *		rky, 1998-08-28
 *		If the file->allsame flag is set, we assume that all the
 *		procs in the relevant MPI communicator will write identical
 *		data at identical offsets in the file, so only proc 0 will
 *		write, and all other procs will wait for p0 to finish. This
 *		is useful for writing metadata, for example. Note that we
 *		don't _check_ that the data is identical. Also, the mechanism
 *		we use to eliminate the redundant writes is by requiring a
 *		call to H5FD_mpio_tas_allsame before the write, which is
 *		rather klugey. Would it be better to pass a parameter to
 *		low-level writes like H5F_block_write and H5F_low_write,
 *		instead?  Or...??? Also, when I created this mechanism I
 *		wanted to minimize the difference in behavior between the old
 *		way of doing things (i.e., all procs write) and the new way,
 *		so the writes are eliminated at the very lowest level, here
 *		in H5FD_mpio_write. It may be better to rethink that, and
 *		short-circuit the writes at a higher level (e.g., at the
 *		points in the code where H5FD_mpio_tas_allsame is called).
 *
 *
 * 		Robb Matzke, 1998-02-18
 *		Added the ACCESS_PARMS argument.
 *
 * 		rky, 1998-04-10
 *		Call independent or collective MPI write, based on
 *		ACCESS_PARMS.
 *
 * 		rky, 1998-04-24
 *		Removed redundant write from H5FD_mpio_write.
 *
 * 		Albert Cheng, 1998-06-01
 *		Added XFER_MODE to control independent or collective MPI
 *		write.
 *
 * 		rky, 1998-08-16
 *		Use BTYPE, FTYPE, and DISP from access parms. The guts of
 *		H5FD_mpio_read and H5FD_mpio_write should be replaced by a
 *		single dual-purpose routine.
 *
 * 		rky, 1998-08-28
 *		Added ALLSAME parameter to make all but proc 0 skip the
 *		actual write.
 *
 * 		Robb Matzke, 1999-04-21
 *		Changed XFER_MODE to XFER_PARMS for all H5FD_*_write()
 *		callbacks.
 *
 * 		Robb Matzke, 1999-07-28
 *		The ADDR argument is passed by value.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 *		Albert Cheng, 1999-12-19
 *		When only-p0-write-allsame-data, p0 Bcasts the
 *		ret_value to other processes.  This prevents
 *		a racing condition (that other processes try to
 *		read the file before p0 finishes writing) and also
 *		allows all processes to report the same ret_value.
 *
 *		Kim Yates, Pat Weidhaas,  2000-09-26
 *		Move block of coding where only p0 writes after the
 *              MPI_File_set_view call.
 *
 *		Quincey Koziol,  2002-05-10
 *		Instead of always writing metadata from process 0, spread the
 *              burden among all the processes by using a round-robin rotation
 *              scheme.
 *
 *		Quincey Koziol,  2002-05-10
 *		Removed allsame code, keying off the type parameter instead.
 *
 *		Quincey Koziol,  2002-05-14
 *		Only call MPI_Get_count if we can use MPI_BYTE for the MPI type
 *              for the I/O transfer.  Someday we might include code to decode
 *              the MPI type used for more complicated transfers and call
 *              MPI_Get_count all the time.
 *
 *              Quincey Koziol - 2002/06/17
 *              Removed 'disp' parameter from H5FD_mpio_setup routine and use
 *              the address of the dataset in MPI_File_set_view() calls, as
 *              necessary.
 *
 *              Quincey Koziol - 2002/06/24
 *              Removed "lazy" MPI_File_set_view() calls, since they would fail
 *              if the first I/O was a collective I/O using MPI derived types
 *              and the next I/O was an independent I/O.
 *
 *              Quincey Koziol - 2002/07/18
 *              Added "block_before_meta_write" dataset transfer flag, which
 *              is set during writes from a metadata cache flush and indicates
 *              that all the processes must sync up before (one of them)
 *              writing metadata.
 *
 *              Quincey Koziol - 2003/10/22-31
 *              Restructured code massively, straightening out logic and finally
 *              getting the bytes_written stuff working.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr,
		size_t size, const void *buf)
{
    H5FD_mpio_t			*file = (H5FD_mpio_t*)_file;
    MPI_Offset 		 	mpi_off;
    MPI_Status			mpi_stat;
    MPI_Datatype		buf_type=MPI_BYTE;      /* MPI description of the selection in memory */
    int			        mpi_code;	/* MPI return code */
    int         		size_i, bytes_written;
    int                         type_size;      /* MPI datatype used for I/O's size */
    int                         io_size;        /* Actual number of bytes requested */
    unsigned			use_view_this_time=0;
    H5P_genplist_t              *plist;                 /* Property list pointer */
    herr_t              	ret_value=SUCCEED;

    FUNC_ENTER_NOAPI(H5FD_mpio_write, FAIL)

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Entering H5FD_mpio_write\n" );
#endif
    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);
    /* Make certain we have the correct type of property list */
    assert(H5I_GENPROP_LST==H5I_get_type(dxpl_id));
    assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
    assert(buf);

    /* Portably initialize MPI status variable */
    HDmemset(&mpi_stat,0,sizeof(MPI_Status));

    /* some numeric conversions */
    if (H5FD_mpi_haddr_to_MPIOff(addr, &mpi_off)<0)
        HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from haddr to MPI off")
    size_i = (int)size;
    if ((hsize_t)size_i != size)
        HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "can't convert from size to size_i")

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'w'])
        fprintf(stdout, "in H5FD_mpio_write  mpi_off=%ld  size_i=%d\n",
                (long)mpi_off, size_i);
#endif

    /* Obtain the data transfer properties */
    if(NULL == (plist = (H5P_genplist_t *)H5I_object(dxpl_id)))
        HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list")

    if(type==H5FD_MEM_DRAW) {
        H5FD_mpio_xfer_t            xfer_mode;   /* I/O tranfer mode */

        /* Obtain the data transfer properties */
        xfer_mode = (H5FD_mpio_xfer_t)H5P_peek_unsigned(plist, H5D_XFER_IO_XFER_MODE_NAME);

        /*
         * Set up for a fancy xfer using complex types, or single byte block. We
         * wouldn't need to rely on the use_view field if MPI semantics allowed
         * us to test that btype=ftype=MPI_BYTE (or even MPI_TYPE_NULL, which
         * could mean "use MPI_BYTE" by convention).
         */
        if(xfer_mode==H5FD_MPIO_COLLECTIVE) {
            MPI_Datatype		file_type;

            /* Remember that views are used */
            use_view_this_time=TRUE;

            /* prepare for a full-blown xfer using btype, ftype, and disp */
            if(H5P_get(plist,H5FD_MPI_XFER_MEM_MPI_TYPE_NAME,&buf_type)<0)
                HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property")
            if(H5P_get(plist,H5FD_MPI_XFER_FILE_MPI_TYPE_NAME,&file_type)<0)
                HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI-I/O type property")

            /*
             * Set the file view when we are using MPI derived types
             */
            /*OKAY: CAST DISCARDS CONST QUALIFIER*/
            if (MPI_SUCCESS != (mpi_code=MPI_File_set_view(file->f, mpi_off, MPI_BYTE, file_type, H5FD_mpi_native_g, file->info)))
                HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)

            /* When using types, use the address as the displacement for
             * MPI_File_set_view and reset the address for the read to zero
             */
            mpi_off=0;
        } /* end if */
    } /* end if */
    else {
        unsigned		        block_before_meta_write=0;      /* Whether to block before a metadata write */

        /* Check if we need to syncronize all processes before attempting metadata write
         * (Prevents race condition where the process writing the metadata goes ahead
         * and writes the metadata to the file before all the processes have
         * read the data, "transmitting" data from the "future" to the reading
         * process. -QAK )
         *
         * The only time we don't want to block before a metadata write is when
         * we are flushing out a bunch of metadata.  Then, we block before the
         * first write and don't block for further writes in the sequence.
         */
        if(H5P_exist_plist(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME)>0)
            if(H5P_get(plist,H5AC_BLOCK_BEFORE_META_WRITE_NAME,&block_before_meta_write)<0)
                HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get H5AC property")

#if 0 /* JRM */
	/* The metadata cache now only writes from process 0, which makes
	 * this synchronization incorrect.  I'm leaving this code commented
	 * out instead of deleting it to remind us that we should re-write
	 * this function so that a metadata write from any other process 
	 * should flag an error.
	 *                                  -- JRM 9/1/05
	 */
        if(block_before_meta_write)
            if (MPI_SUCCESS!= (mpi_code=MPI_Barrier(file->comm)))
                HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code)
#endif /* JRM */

        /* Only one process will do the actual write if all procs in comm write same metadata */
        if (file->mpi_rank != H5_PAR_META_WRITE) {
#ifdef H5FDmpio_DEBUG
            if (H5FD_mpio_Debug[(int)'w']) {
                fprintf(stdout,
                    "  proc %d: in H5FD_mpio_write (write omitted)\n",
                    file->mpi_rank );
            }
#endif
            HGOTO_DONE(SUCCEED) /* skip the actual write */
        } /* end if */
    } /* end if */

    /* Write the data. */
    if (use_view_this_time) {
       H5FD_mpio_collective_opt_t coll_opt_mode;
       H5FD_mpio_collective_opt_t  xfer_opt_mode;
#ifdef H5FDmpio_DEBUG
        if (H5FD_mpio_Debug[(int)'t'])
            fprintf(stdout, "H5FD_mpio_write: using MPIO collective mode\n");
#endif
        /* Peek the collective_opt property to check whether the application wants to do IO individually. */
        coll_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist,H5D_XFER_MPIO_COLLECTIVE_OPT_NAME);

         /* Peek the xfer_opt_mode property to check whether the application wants to do IO individually. */
        xfer_opt_mode = (H5FD_mpio_collective_opt_t)H5P_peek_unsigned(plist,H5D_XFER_IO_XFER_OPT_MODE_NAME);

        /*OKAY: CAST DISCARDS CONST QUALIFIER*/
        if(coll_opt_mode == H5FD_MPIO_COLLECTIVE_IO && xfer_opt_mode == H5FD_MPIO_COLLECTIVE_IO ) {
#ifdef H5FDmpio_DEBUG
        if (H5FD_mpio_Debug[(int)'t'])
            fprintf(stdout, "H5FD_mpio_write: doing MPI collective IO\n");
#endif
        /* Temporarily change to _at 
if (MPI_SUCCESS != (mpi_code=MPI_File_write_at_all(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat)))
*/
        if (MPI_SUCCESS != (mpi_code=MPI_File_write_at_all(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at_all failed", mpi_code)
        }
        else {
#ifdef H5FDmpio_DEBUG
        if (H5FD_mpio_Debug[(int)'t'])
            fprintf(stdout, "H5FD_mpio_write: doing MPI independent IO\n");
#endif
 
          if (MPI_SUCCESS != (mpi_code=MPI_File_write_at(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code)
        }


       /*
         * Reset the file view when we used MPI derived types
         */
        /*OKAY: CAST DISCARDS CONST QUALIFIER*/
        if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(file->f, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, H5FD_mpi_native_g,  file->info)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)
    } else {
        /*OKAY: CAST DISCARDS CONST QUALIFIER*/
        if(MPI_SUCCESS != (mpi_code = MPI_File_write_at(file->f, mpi_off, (void*)buf, size_i, buf_type, &mpi_stat)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code)
    }

    /* How many bytes were actually written? */
    /* [This works because the "basic elements" we use for all our MPI derived
     *  types are MPI_BYTE.  We should be using the 'buf_type' for the MPI
     *  datatype in this call though... (We aren't because using it causes
     *  the LANL "qsc" machine to dump core - 12/19/03) - QAK]
     */
    if (MPI_SUCCESS != (mpi_code=MPI_Get_elements(&mpi_stat, MPI_BYTE, &bytes_written)))
        HMPI_GOTO_ERROR(FAIL, "MPI_Get_elements failed", mpi_code)

    /* Get the type's size */
    if (MPI_SUCCESS != (mpi_code=MPI_Type_size(buf_type,&type_size)))
        HMPI_GOTO_ERROR(FAIL, "MPI_Type_size failed", mpi_code)

    /* Compute the actual number of bytes requested */
    io_size=type_size*size_i;

    /* Check for write failure */
    if (bytes_written != io_size)
        HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed")

    /* Forget the EOF value (see H5FD_mpio_get_eof()) --rpm 1999-08-06 */
    file->eof = HADDR_UNDEF;

done:

#if 0 /* JRM */
    /* Since metadata writes are now done by process 0 only, this broadcast
     * is no longer needed.  I leave it in and commented out to remind us 
     * that we need to re-work this function to reflect this reallity.
     *
     *                                          -- JRM 9/1/05
     */
    /* if only one process writes, need to broadcast the ret_value to 
     * other processes 
     */
    if(type != H5FD_MEM_DRAW) {
	if(MPI_SUCCESS != (mpi_code = MPI_Bcast(&ret_value, (int)sizeof(ret_value), MPI_BYTE, H5_PAR_META_WRITE, file->comm)))
	    HMPI_DONE_ERROR(FAIL, "MPI_Bcast failed", mpi_code)
    } /* end if */
#endif /* JRM */

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "proc %d: Leaving H5FD_mpio_write with ret_value=%d\n",
	    file->mpi_rank, ret_value );
#endif
    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:    H5FD_mpio_flush
 *
 * Purpose:     Makes sure that all data is on disk.  This is collective.
 *
 * Return:      Success:	Non-negative
 *
 * 		Failure:	Negative
 *
 * Programmer:  Unknown
 *              January 30, 1998
 *
 * Modifications:
 * 		Robb Matzke, 1998-02-18
 *		Added the ACCESS_PARMS argument.
 *
 * 		Robb Matzke, 1999-08-06
 *		Modified to work with the virtual file layer.
 *
 *              Robb Matzke, 2000-12-29
 *              Make sure file size is at least as large as the last
 *              allocated byte.
 *
 *              Quincey Koziol, 2002-06-??
 *              Changed file extension method to use MPI_File_set_size instead
 *              read->write method.
 *
 *-------------------------------------------------------------------------
 */
static herr_t
H5FD_mpio_flush(H5FD_t *_file, hid_t UNUSED dxpl_id, unsigned closing)
{
    H5FD_mpio_t		*file = (H5FD_mpio_t*)_file;
    int			mpi_code;	/* mpi return code */
    MPI_Offset          mpi_off;
    herr_t              ret_value=SUCCEED;

    FUNC_ENTER_NOAPI(H5FD_mpio_flush, FAIL)

#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Entering H5FD_mpio_flush\n" );
#endif
    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Extend the file to make sure it's large enough, then sync.
     * Unfortunately, keeping track of EOF is an expensive operation, so
     * we can't just check whether EOF<EOA like with other drivers.
     * Therefore we'll just read the byte at EOA-1 and then write it back. */
    if(file->eoa>file->last_eoa) {
#ifdef H5_MPI_FILE_SET_SIZE_BIG
        if (H5FD_mpi_haddr_to_MPIOff(file->eoa, &mpi_off)<0)
            HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "cannot convert from haddr_t to MPI_Offset")

        /* Extend the file's size */
        if (MPI_SUCCESS != (mpi_code=MPI_File_set_size(file->f, mpi_off)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_set_size failed", mpi_code)
#else /* H5_MPI_FILE_SET_SIZE_BIG */
        if (0==file->mpi_rank) {
            uint8_t             byte=0;
            MPI_Status          mpi_stat;

            /* Portably initialize MPI status variable */
            HDmemset(&mpi_stat,0,sizeof(MPI_Status));

            if (H5FD_mpi_haddr_to_MPIOff(file->eoa-1, &mpi_off)<0)
                HGOTO_ERROR(H5E_INTERNAL, H5E_BADRANGE, FAIL, "cannot convert from haddr_t to MPI_Offset")
            if (MPI_SUCCESS != (mpi_code=MPI_File_read_at(file->f, mpi_off, &byte, 1, MPI_BYTE, &mpi_stat)))
                HMPI_GOTO_ERROR(FAIL, "MPI_File_read_at failed", mpi_code)
            if (MPI_SUCCESS != (mpi_code=MPI_File_write_at(file->f, mpi_off, &byte, 1, MPI_BYTE, &mpi_stat)))
                HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at failed", mpi_code)
        } /* end if */
#endif /* H5_MPI_FILE_SET_SIZE_BIG */

	/* Don't let any proc return until all have extended the file.
         * (Prevents race condition where some processes go ahead and write
         * more data to the file before all the processes have finished making
         * it the shorter length, potentially truncating the file and dropping
         * the new data written)
         */
        if (MPI_SUCCESS!= (mpi_code=MPI_Barrier(file->comm)))
            HMPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code)

        /* Update the 'last' eoa value */
        file->last_eoa=file->eoa;
    } /* end if */

    /* Only sync the file if we are not going to immediately close it */
    if(!closing) {
        if (MPI_SUCCESS != (mpi_code=MPI_File_sync(file->f)))
            HMPI_GOTO_ERROR(FAIL, "MPI_File_sync failed", mpi_code)
    } /* end if */

done:
#ifdef H5FDmpio_DEBUG
    if (H5FD_mpio_Debug[(int)'t'])
    	fprintf(stdout, "Leaving H5FD_mpio_flush\n" );
#endif

    FUNC_LEAVE_NOAPI(ret_value)
}


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_mpi_rank
 *
 * Purpose:	Returns the MPI rank for a process
 *
 * Return:	Success: non-negative
 *		Failure: negative
 *
 * Programmer:	Quincey Koziol
 *              Thursday, May 16, 2002
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
H5FD_mpio_mpi_rank(const H5FD_t *_file)
{
    const H5FD_mpio_t	*file = (const H5FD_mpio_t*)_file;
    int ret_value;              /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_mpi_rank, FAIL)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Set return value */
    ret_value=file->mpi_rank;

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpio_mpi_rank() */


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_mpi_size
 *
 * Purpose:	Returns the number of MPI processes
 *
 * Return:	Success: non-negative
 *		Failure: negative
 *
 * Programmer:	Quincey Koziol
 *              Thursday, May 16, 2002
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static int
H5FD_mpio_mpi_size(const H5FD_t *_file)
{
    const H5FD_mpio_t	*file = (const H5FD_mpio_t*)_file;
    int ret_value;              /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_mpi_size, FAIL)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Set return value */
    ret_value=file->mpi_size;

done:
    FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpio_mpi_size() */


/*-------------------------------------------------------------------------
 * Function:	H5FD_mpio_communicator
 *
 * Purpose:	Returns the MPI communicator for the file.
 *
 * Return:	Success:	The communicator
 *
 *		Failure:	NULL
 *
 * Programmer:	Robb Matzke
 *              Monday, August  9, 1999
 *
 * Modifications:
 *
 *-------------------------------------------------------------------------
 */
static MPI_Comm
H5FD_mpio_communicator(const H5FD_t *_file)
{
    const H5FD_mpio_t	*file = (const H5FD_mpio_t*)_file;
    MPI_Comm ret_value;         /* Return value */

    FUNC_ENTER_NOAPI(H5FD_mpio_communicator, MPI_COMM_NULL)

    assert(file);
    assert(H5FD_MPIO==file->pub.driver_id);

    /* Set return value */
    ret_value=file->comm;

done:
    FUNC_LEAVE_NOAPI(ret_value)
}

#endif /* H5_HAVE_PARALLEL */
	Commit message (Expand)	Author	Age	Files	Lines
*	[svn-r14204] Description:	Quincey Koziol	2007-10-12	1	-3/+3

*	[svn-r13753] Description:	Quincey Koziol	2007-05-14	1	-2/+2

*	[svn-r13440] Description:	Quincey Koziol	2007-03-01	1	-0/+313