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* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-2/+2
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-20/+20
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Clang-format of source filesAllen Byrne2020-09-301-574/+525
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* Merge remote-tracking branch 'hdffv/develop' into rebased-fprintf-experimentDavid Young2020-09-031-87/+61
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| * Minor refactoring based on 1.10 normalization workDana Robinson2020-08-171-8/+8
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| * Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-79/+53
| | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* | Squash my changes on branch `fprintf-experiment` into one commit forDavid Young2020-07-071-3/+3
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reapplication to my new warnings branch, `warnings-again`. These changes are included: commit 915551b7bf64e777dd2007386ec77b1d117770da Merge: 63858c2 a8892bb Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:39:49 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9 Merge: 5c911d8 f907b51 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:33:54 2019 -0600 Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b': Oops, remove more C99 designated initializers for VS 2010 compatibility. commit 63858c22e168acaec0af8ced6641f26102cc6bb0 Merge: 20ae787 5c911d8 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 17:04:42 2019 -0600 Merge remote-tracking branch 'hdf5/develop' into fprintf-experiment commit 5c911d8baf3ee7fe654269088eebdf07f59a8192 Merge: b8a5671 62208b0 Author: David Young <dyoung@hdfgroup.org> Date: Mon Nov 25 16:58:27 2019 -0600 Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop * commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits) Add an #include to get a function declaration. Don't use C99 designated initializers, they're not compatible with Visual Studio 2010. Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*. This is more code that may not compile with VS2010, *sigh sigh*. Always warn on maybe-uninitialized. -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using. Only promote maybe-uninitialized warnings to errors on GCC 8. Even on GCC 8, there may be false positives at low optimization levels? I need to check. Only use -Werror=cast-function-type with GCC 8 and later. Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags. Add new source files to CMakeLists.txt. Mention the -Werror= flags in libhdf5.settings.in. free -> HDfree Promote decleration-after-statement warnings to errors. Quiet decleration-after-statement warnings. Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements. Document H5D__chunk_mem_xfree_wrapper(). Undo accidental test deletion. Oops, delete a debug printf that snuck in here. Undo my changes to the HD macros, hadn't really intended those to be on this branch.... Make errors of some more warnings. Move disabled warnings to DEVELOPER_WARNING_CFLAGS. Put just one warning option on a line, and sort some of the options. Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *. Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. ... commit 20ae7877e33931b95e8c3502b027d6c3fe94a11f Merge: 46f8c61 edd5297 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:34:09 2019 -0600 Merge remote-tracking branch 'origin/add-werror-and-squash-some' into fprintf-experiment commit 46f8c613d5117a8be5bc8385a072daa0b4262f06 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:29:00 2019 -0600 GCC really wants us to use `ll` to format `long long`, so try to make that work before any other format modifier. Seems like we're not compiling the autoconf test program with -Werror=format ? Probably should. commit eee35b8ef3759c391327cd48a9b3c56b6f8abc99 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:28:05 2019 -0600 It's hard to know just how wide an HDoff_t will be, and I don't think POSIX or C standards provide a PRI macro for it, so cast to intmax_t and format using PRIdMAX. commit 86eab12df7a89b546a38e99f8178dd2adbcb3433 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 15:26:25 2019 -0600 URemove some casts.se the right format string for the argument. Here and there stop casting a printf argument. commit f722f7cbecbaa99449941484b014426f62f1bed5 Merge: 58e3743 6d5ec83 Author: David Young <dyoung@hdfgroup.org> Date: Fri Nov 22 14:44:16 2019 -0600 Merge branch 'add-werror-and-squash-some' into fprintf-experiment commit 58e3743b7faa9836606ee91798fe80dfc0040da7 Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 21:07:21 2019 -0600 Remove custom HDfprintf implementation, using the standard library's, instead. Take a swipe at repairing fprintf format strings, mainly replacing "%Hu" with "%" PRIuHSIZE, "%a" with "%" PRIuHADDR, "%Zu" with "%zu". Here and there remove an awkward cast of a printf argument to `long long` and use PRI[doux]8, PRI[doux]32, or PRI[doux]64, instead. Change occurrences of "%t" to "%s" and perform a suitable change of argument, `cond` -> `cond ? "TRUE" : "FALSE"`. Some occurrences of %Hu, %a, and %t remain, they just weren't flagged by the compiler because of #ifdef'age. commit d4366909293fa970c23512ac80e5d865d76cddbf Author: David Young <dyoung@hdfgroup.org> Date: Wed Nov 20 20:54:32 2019 -0600 Promote format-string warnigns to errors.
* H5T_copy() constification plus Quincey's contributions.David Young2020-01-291-23/+78
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-25/+104
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* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-061-2/+2
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
| * Merge branch 'develop' into bugfix/intel_warningskmu2019-12-091-1/+0
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| * | remove unnecessary check macrokmu2019-12-061-1/+1
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| * | fix intel compile warningskmu2019-12-041-2/+2
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* | | Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-041-58/+1
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* | | Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-0/+1
| |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* | Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings ↵David Young2019-11-271-1/+0
|/ | | | level and fixing some code.' (commit 5c911d8baf3)"
* Add an #include to get a function declaration.David Young2019-11-251-0/+1
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* Add object header flags to API contextChris Hogan2019-11-141-2/+12
| | | | | Add missing DCPL to API context state Replace a couple LCPL H5P_get calls with H5CX_get_*
* Update versioning to next major versionAllen Byrne2019-09-251-346/+347
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* Added the map (H5M) APIDana Robinson2019-08-131-0/+3
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* Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-0/+1
| | | | clean up warnings.
* Set V112 as the latest format and extend the arrays of version bounds.Vailin Choi2019-04-041-0/+1
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* - Added H5MMprivate.h #includes where neededDana Robinson2019-03-161-2/+0
| | | | | - Added casts to quiet H5MM_memcpy warnings - Removed char * casts from HDmemcpy
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-2/+2
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* Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, sinceNeil Fortner2019-01-081-6/+1
| | | | space for it was removed.
* Formatting adjustmentsJacob Smith2018-12-181-30/+30
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* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-181-1/+0
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| * Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-1/+0
| | | | | | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* | Reformat to be more consistent with existing code.Jacob Smith2018-12-131-115/+47
| | | | | | | | Fix a few typos.
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-383/+129
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| * Refactor infrastructure for setting FAPL information from environmentQuincey Koziol2018-11-281-1/+0
| | | | | | | | | | | | variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
| * Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-1/+1
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| * Remove most debugging shims & scaffolding.Quincey Koziol2018-11-041-8/+0
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-10-251-1/+1
| |\ | | | | | | | | | stackable_vol
| | * Split H5VLnative.h into public and private files and updatedDana Robinson2018-10-201-1/+1
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| * | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-1/+9
| |/ | | | | | | modified: test/dsets.c
| * VOL FEATUREDana Robinson2018-10-101-46/+61
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| * Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-84/+82
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| * Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-181-274/+8
| | | | | | | | orginally intended to support the full SWMR feature.
* | Continued progress in implementing tests.Jacob Smith2018-09-201-2/+1
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* | Stash work on object header reduction code and tests.Jacob Smith2018-09-111-87/+295
|/ | | | CMake stuff is not verified.
* Changes made based on feedback from pull request #1039.Vailin Choi2018-05-141-12/+15
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* Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-69/+84
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-4/+59
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Fix for HDFFV-10209 VDS SWMR test failureVailin Choi2018-03-091-0/+1
| | | | | | | | Free the object header when there are chksum retries.
| * Changes made based on code reviews.Vailin Choi2018-01-121-10/+12
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| * (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-4/+56
| | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-185/+591
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* Moved code from H5O.c to H5Oint.cDana Robinson2017-11-141-0/+2641
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* Added H5Oint.c file.Dana Robinson2017-11-141-0/+72
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