| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
| |
Comments and whitespace
Skip file-locking and cache changes
|
| |
|
|
|
|
|
|
| |
header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
to develop
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
address problems from comments
fix and address comments
change according to previous comments
add missing piece
remove unnecessary check macro
fix intel compile warnings
Revert "fix warnings from Intel compiler"
Revert "fix warnings and some text alignment"
Revert "let hdf5 pick up the right compiler in Intel environment"
Revert "fix issues from previous PR comments"
Revert "using a different MACRO"
using a different MACRO
fix issues from previous PR comments
let hdf5 pick up the right compiler in Intel environment
fix warnings and some text alignment
fix warnings from Intel compiler
|
| |
|
|
|
|
|
| |
cache. Fix issues involving datasets being "no allocated" when they
contain cached raw data.
|
| |
|
| |
|
|
|
|
| |
chunk dimension for safeguard.
|
|
|
|
|
|
|
|
|
| |
1) Check for valid object header version for a refcount messge
2) Check for invalid fill value size
3) Check for invalid dimension size in a layout message
4) Add --enable-error-stack option to h5stat
5) Add error checks to h5stat.c
6) Add tests to h5stat and h5dump
|
|\
| |
| |
| |
| |
| | |
merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
|
| | |
|
| | |
|
| |
| |
| |
| |
| |
| | |
(2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds.
(3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check.
(4) Add version bounds check for cache image feature.
|
|/ |
|
|
|
|
|
|
|
|
|
|
| |
hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
|
|
|
|
|
|
|
|
| |
Bring 'none' chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
|
|
|
|
|
|
|
|
| |
Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
|
|
|
|
|
| |
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
Autotools serial w/ Java, Fortran, & C++
|
|
|
|
|
|
|
|
|
| |
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
| |
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
(h5committest forthcoming)
|
|
|
|
|
|
| |
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
autotools serial
autotools parallel (MPICH 3.1.4)
|
|
|
|
|
|
|
|
| |
metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library
tested on bb-8 with parallel and serial.
|
|
|
|
|
|
|
|
|
|
| |
checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
|
|
|
|
|
|
|
|
|
|
| |
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
|\
| |
| |
| |
| |
| |
| |
| | |
Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Revert changes to pass file pointer to selection serialize/deserialize
routines. Also patch back in some changes that were merged out in the
previous merge w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
|
|\ \
| |/
| |
| |
| |
| |
| |
| | |
Bring in changes from the trunk, through r27628.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Align w/vds branch: Change code in H5O_layout_copy() to use switch for
different types of dataset layouts.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Align w/vds branch: Whitespace cleanup, move common code for opening a
dataset into a new routine, misc. style cleanups.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest upcoming)
|
| |
| |
| |
| |
| |
| | |
Fix issue in VDS delete routine.
Tested: ummon
|
| |
| |
| |
| |
| |
| | |
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Implement support for H5Pencode/decode with VDS properties.
Testing for H5Pencode/decode with VDS.
Relax assertion check for number of elements written to buffer as we do not
check for overlaps in mappings.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Implement support for H5Ocopy on VDS.
Testing for H5Ocopy on VDS.
Fix check-vfd failure.
Other minor fixes/cleanup.
Note there is a preexisting failure in h5repack testing.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
file and dataset
to open source files and datasets, instead of using the default property lists.
Modify VDS to reject attempts at parallel I/O, fix parallel compile error.
Modify VDS to not write fill value to memory buffer if the fill value is
undefined.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
mappings.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup
Tested: Kubuntu 64 (home computer)
|
|\ \
| |/
| |
| |
| | |
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
(C++ and Fortran 2003 also tested)
|
| |
| |
| |
| |
| |
| |
| |
| | |
* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
|
| |
| |
| |
| |
| |
| |
| |
| | |
Passes use case test, no regression tests yet.
Add functions H5Pset/get_virtual_printf_gap (not tested yet).
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pset/get_virtual_view and rename
enum argument.
Add support for AND and NOTA/NOTB operations with unlimited selections.
Add some tests for unlimited selections.
Other minor fixes/cleanup.
Note: "clipped" status of unlimited selections is not properly updated with
H5Sselect_copy. This is a deliberate omission since fixing it would take work
and we are planning to eliminate the clipped status anyways.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pget_virtual_dataspace_bounds.
Minor refactor of dataset initialization code to make this cleaner.
Update h5_vds-percival-unlim-maxmin.c
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
where selections
have discrete blocks and the extent is set by the minimum (untested, and there
is still no way to set that preference).
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Not tested (except for percival-unlim example)
Fix percival-unlim example
Other bug fixes/cleanup
Tested: Fedora 64
|
| |
| |
| |
| |
| |
| | |
Other minor fixes
Tested: jam
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
VDS code yet).
Add tests for unlimited selections.
Various other minor changes.
Tested: ummon
|