| Commit message (Collapse) | Author | Age | Files | Lines |
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cache. Fix issues involving datasets being "no allocated" when they
contain cached raw data.
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chunk dimension for safeguard.
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1) Check for valid object header version for a refcount messge
2) Check for invalid fill value size
3) Check for invalid dimension size in a layout message
4) Add --enable-error-stack option to h5stat
5) Add error checks to h5stat.c
6) Add tests to h5stat and h5dump
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merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
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(2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds.
(3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check.
(4) Add version bounds check for cache image feature.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Bring 'none' chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
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Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
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Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
Autotools serial w/ Java, Fortran, & C++
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Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
(h5committest forthcoming)
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Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
autotools serial
autotools parallel (MPICH 3.1.4)
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metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library
tested on bb-8 with parallel and serial.
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checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
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Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.
Tested: ummon
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Revert changes to pass file pointer to selection serialize/deserialize
routines. Also patch back in some changes that were merged out in the
previous merge w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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Bring in changes from the trunk, through r27628.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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Align w/vds branch: Change code in H5O_layout_copy() to use switch for
different types of dataset layouts.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Align w/vds branch: Whitespace cleanup, move common code for opening a
dataset into a new routine, misc. style cleanups.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest upcoming)
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Fix issue in VDS delete routine.
Tested: ummon
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Other minor fixes/cleanup.
Tested: ummon
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Implement support for H5Pencode/decode with VDS properties.
Testing for H5Pencode/decode with VDS.
Relax assertion check for number of elements written to buffer as we do not
check for overlaps in mappings.
Other minor fixes/cleanup.
Tested: ummon
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Implement support for H5Ocopy on VDS.
Testing for H5Ocopy on VDS.
Fix check-vfd failure.
Other minor fixes/cleanup.
Note there is a preexisting failure in h5repack testing.
Tested: ummon
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file and dataset
to open source files and datasets, instead of using the default property lists.
Modify VDS to reject attempts at parallel I/O, fix parallel compile error.
Modify VDS to not write fill value to memory buffer if the fill value is
undefined.
Other minor fixes/cleanup.
Tested: ummon
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mappings.
Other minor fixes/cleanup.
Tested: ummon
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H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup
Tested: Kubuntu 64 (home computer)
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Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
(C++ and Fortran 2003 also tested)
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* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
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Passes use case test, no regression tests yet.
Add functions H5Pset/get_virtual_printf_gap (not tested yet).
Other minor fixes/cleanup.
Tested: ummon
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H5Pset/get_virtual_view and rename
enum argument.
Add support for AND and NOTA/NOTB operations with unlimited selections.
Add some tests for unlimited selections.
Other minor fixes/cleanup.
Note: "clipped" status of unlimited selections is not properly updated with
H5Sselect_copy. This is a deliberate omission since fixing it would take work
and we are planning to eliminate the clipped status anyways.
Tested: ummon
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H5Pget_virtual_dataspace_bounds.
Minor refactor of dataset initialization code to make this cleaner.
Update h5_vds-percival-unlim-maxmin.c
Other minor fixes/cleanup.
Tested: ummon
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where selections
have discrete blocks and the extent is set by the minimum (untested, and there
is still no way to set that preference).
Tested: ummon
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Not tested (except for percival-unlim example)
Fix percival-unlim example
Other bug fixes/cleanup
Tested: Fedora 64
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Other minor fixes
Tested: jam
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VDS code yet).
Add tests for unlimited selections.
Various other minor changes.
Tested: ummon
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Tested: ummon
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Minor typos & code cleanups
Tested on:
MacOSX/64 10.10.2 (amazon) w/serial & parallel
(Too minor to require h5committest)
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Tested: ummon
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Switch from enum H5D_CHUNK_BTREE to H5D_CHUNK_IDX_BTREE, along with a couple
of minor whitespace touchups.
Tested on:
Mac OSX/64 10.10.2 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial
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Tested: ummon
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Commit progress through 1610 CST 2/17/15
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