| Commit message (Collapse) | Author | Age | Files | Lines |
| |
|
| |
|
| |
|
| |
|
|
|
|
| |
and the tool and API wrappers will be coming in over the weekend.
|
|
|
|
|
|
|
|
|
| |
Adds /*out*/ parameters to H5O_close() and H5F_try_close() so
that H5D/G_close() will know when H5O_close() has triggered a
file close and thus the file struct is not reliable.
Also removes the H5F_CLOSING() macro and related which were
formerly used to check if the file was closing.
|
|
|
|
| |
with revise_chunks changes, and remove unused "message locking" code.
|
|
|
|
|
|
|
|
|
| |
More warning cleaups: down to 770 warnings (from ~940) in 134 files (from
148), with 28 unique kinds of warnings (from 31).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
|
| |
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk. Also CMake support for h5format_convert and a bunch of
misc. cleanups.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
|
| |
Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk. Brings along updated metadata cache
entry tagging, and the internal object flush routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
| |
Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
|
|
|
|
|
| |
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
Autotools serial w/ Java, Fortran, & C++
|
|
|
|
|
|
|
|
|
| |
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
| |
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
(h5committest forthcoming)
|
|
|
|
|
|
|
| |
This is unused and causes problems for a user who has OUT #defined.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
autotools serial
|
|
|
|
| |
Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
|
|
|
|
|
|
|
|
|
| |
Normalize against the phdf5_metadata_opt branch, in preparation for
merging it to trunk.
Tested on:
MacOSX/64 10.11.3 (amazon) w/serial, parallel, and production builds
h5committest forthcoming
|
|
|
|
|
|
|
|
|
| |
Bring over rest of performance improvements for extending chunked datasets
and normalize against revise_chunks branch.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel)
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
|
| |
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
|\
| |
| |
| |
| |
| |
| |
| | |
Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
|
| |
| |
| |
| |
| |
| |
| |
| | |
were previously
opened when calculating the VDS extent, instead assuming they still exist.
Tested: ummon
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Bring 'fail if unknown always' object header message flag from the
avoid_truncate branch, strengthen error checking for unknown messages, and try
to catch object header code configurations at compile time (instead of runtime).
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
(h5committest forthcoming)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
file and dataset
to open source files and datasets, instead of using the default property lists.
Modify VDS to reject attempts at parallel I/O, fix parallel compile error.
Modify VDS to not write fill value to memory buffer if the fill value is
undefined.
Other minor fixes/cleanup.
Tested: ummon
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Merge v3 metadata cache changes to trunk. Yay! :-)
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(daily tested on branch)
|
| |
| |
| |
| |
| |
| |
| |
| | |
mappings.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
space - the
library no longer iterates over all source datasets in the printf mapping, it
now only looks at the ones that could be involved in I/O (the ones whose bounds
overlap with the selection in the unlimited dimension).
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup
Tested: Kubuntu 64 (home computer)
|
|\ \
| |/
| |
| |
| | |
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
(C++ and Fortran 2003 also tested)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/64 2.6.x (koala) w/serial
Linux/32 2.6.x (jam) w/serial & parallel
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Add testing for this.
Fix bug in printf string parsing.
Add test for this.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| | |
Various bug fixes, including a temporary fix for printf with FIRST_MISSING view.
Other cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Passes use case test, no regression tests yet.
Add functions H5Pset/get_virtual_printf_gap (not tested yet).
Other minor fixes/cleanup.
Tested: ummon
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Minor code & warning cleanups.
Tested on:
MacOSX/64 10.10.2 (amazon) w/serial & parallel
Linux/32 2.6.18 (jam) w/serial & parallel
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pset/get_virtual_view and rename
enum argument.
Add support for AND and NOTA/NOTB operations with unlimited selections.
Add some tests for unlimited selections.
Other minor fixes/cleanup.
Note: "clipped" status of unlimited selections is not properly updated with
H5Sselect_copy. This is a deliberate omission since fixing it would take work
and we are planning to eliminate the clipped status anyways.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pget_virtual_dataspace_bounds.
Minor refactor of dataset initialization code to make this cleaner.
Update h5_vds-percival-unlim-maxmin.c
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
where selections
have discrete blocks and the extent is set by the minimum (untested, and there
is still no way to set that preference).
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Not tested (except for percival-unlim example)
Fix percival-unlim example
Other bug fixes/cleanup
Tested: Fedora 64
|
| |
| |
| |
| | |
Commit progress through 3/17/15
|
| |
| |
| |
| | |
Commit progress through 1610 CST 2/17/15
|
|/
|
|
| |
Commit progress through 2/10/15 at 1500 CST
|
|
|
|
|
|
|
|
| |
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_AND_OPEN_FOR_WRITE. Will add a new
H5O_MSG_FLAG_FAIL_IF_UNKNOWN_ALWAYS with the new avoid_truncate patch
coming later.
tested h5committest
|
|
|
|
|
|
|
|
|
|
|
|
| |
Count).
This is needed to avoid a conflict with the Read Context object to be
introduced in another Project.
No impact on users, since this is a private module, and low for
developers as the RC module use is very sparse in the library.
Tested with h5committest.
|
|
|
|
|
|
|
|
|
| |
Bring "merge committed datatypes during H5Ocopy" feature from branch to
trunk. (Also has some minor bugfixes with it)
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug
(h5committest coming up)
|
|
|
|
|
|
|
|
| |
Description:
An old patch was mistakenly committed in r21556. Replaced this fix with the
latest.
Tested: jam, koala, heiwa (h5committest)
|
|
|
|
|
|
| |
H5O_move_msgs_forward() when writing attributes. h5committested.
Tests are checked into the performance suite.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring some of Neil's changes to help support SWMR access in the v1
B-tree code from the revise_chunks branch back to the trunk.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.4 (amazon) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
|