| Commit message (Collapse) | Author | Age | Files | Lines |
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----------------------
./src/H5D.c
./src/H5Dpublic.c
Added H5Dget_space().
./src/H5Gstab.c
./src/H5H.c
Fixed a comparison with size_t against <0.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Changed `intn' to `int' for public function args and
returns. H5Pget_hyperslab() returns the dimensionality.
./test/testhdf5.h
Clears error stack more frequently.
./src/H5Psimp.c
./test/cmpd_dset.c
Impelementing data space conversion.
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H5Pset_hyperslab from
building hyperslab arrays so earlier hyperslab don't get blown away if the new
one is incorrect. Fixed fence-post error in range checking also.
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----------------------
./Makefile.in
./config/commence.in
With GNU make you can now use `-j' and `-l' options and things
get built correctly. I can do a `make -j -l6 test' from a
clean hdf5 source tree (after configure) in 45 seconds (8 to
build dependencies, 26 to compile everything, and 11 to run
the tests).
./src/H5Gnode.c
Removed a comment that no longer applies.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Changed H5Pselect_hyperslab() to H5Pset_hyperslab() and added
H5Pget_hyperslab() and H5P_get_hyperslab().
Replaced a couple short memset() calls with a for loop.
Removed `if (foo!=NULL)' from around H5MM_xfree() calls.
Clear hslab_def when the hyperslab disappears.
./src/H5Tpublic.h
Removed trailing enum comma.
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routine are similar
to the HDF4 SDwritedata routine: start, count & stride. The start indicates
the base location of the hyperslab, count indicates the number of elements in
the hyperslab and stride indicates the packing of the hyperslab. The hyperslab
is assumed to be the same rank as the dataspace it is located within. The
hyperslab is stored for future use, no I/O occurs in this routine.
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----------------------
./src/*.h
Fixed indentation where indent(1) screwed up. This isn't by
any means the final say, but it's better than it was.
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5M.c
./src/H5P.c
./src/H5T.c
./src/H5Tconv.c
./src/debug.c
./test/dtypes.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Removed some atom functions from the API and made them
library-scope. Also changed some names by removing the
redundant `atom' from the name and by adding a `_' after the
`H5A'.
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----------------------
./Makefile.in
Added more dependencies to .PHONY.
./src/H5D.c
The write side of the I/O pipeline is implemented now too.
Things are looking good for the prototype and it's just a
matter of populating the library with the data type and data
space conversion functions.
./src/H5Farray.c
./src/H5Fprivate.h
./test/istore.c
Changed the order of the arguments for H5F_arr_read() and
H5F_arr_write().
./src/H5P.c
./src/H5Pprivate.h
Changed the names of the arguments of H5P_find(). Fleshed out
the mgath and fscat callback types.
./src/H5Psimp.c
Added stubs for H5P_simp_mgath() and H5P_simp_fscat() that
operate on the entire data space. Quincey, once you have the
data space hyperslab stuff in place let me know and I'll
finish the H5P_simp_*() functions to do partial I/O. Or you
can take a look at it too if you like; there's some comments
in there for you.
./src/H5V.c
./src/H5Vprivate.h
Changed dimensionality arguments from `size_t' to `intn' to be
consistent with the rest of the library and to get rid of
warnings on 64-bit Irix.
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----------------------
./MANIFEST
./src/H5Psimp.c [NEW]
./src/Makefile.in
Added H5Psimp.c and populated it with some conversion
functions. Eventually the parts of H5P.c that operate on
simple data spaces will be migrated to H5Psimp.c and other
files will be created for other types of data spaces.
./src/H5D.c
The read pipeline, H5Dread(), has been updated to handle data
space conversion although the actual simple data space
conversion functions don't do anything yet. But we're getting
really close!
./src/H5P.c
./src/H5Pprivate.h
Added H5P_find() to locate data space conversion functions.
Added typedefs for structs related to data space conversion.
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----------------------
./config/freebsd2.2.1
./config/linux
Added -UH5O_DEBUG to the debug flags. Turn this on to get
lots of lines on stderr to show what objects are opened and
closed.
./src/H5C.o
./src/H5Cpublic.h
./test/dsets.c
./test/tfile.c
Split H5Cget_prop() and H5Cset_prop() into functions for each
property.
./src/H5D.c
./src/H5Dpublic.h
./src/H5Gstab.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Ocstore.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Oistore.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Ostab.c
./src/H5P.c
./src/istore.c
./test/tohdr.c
Object header functions now understand constant
vs. non-constant messages.
./src/H5F.c
./src/H5Fprivate.h
The file OID can be closed before other OID's.
./src/H5Flow.c
H5F_addr_defined() is a macro in this file.
./src/H5G.c
./src/H5Gpublic.h
./test/tstab.c
A current working group cannot be deleted.
./src/H5Gent.c
./src/H5Gpkg.h
Removed unused functionality.
./src/H5public.h
Includes <sys/types.h> for size_t.
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----------------------
./src/H5private.h
Changed HDF5_MAJOR_VERSION to 5
./src/H5Aprivate.h
./src/H5Apublic.h
Added group atoms.
./src/H5D.c
./src/H5P.c
./test/istore.c
./test/tohdr.c
./test/tstab.c
Updated for symbol table interface changes.
./src/H5F.c
./src/H5Fprivate.h
Simpler handling of special case files: empty files and files
with a single object.
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5Gshad.c (DELETED)
./src/H5Gstab.c
./src/Makefile.in
Removed shadows, simplifying code. Symbol table entries are
allowed to cache only constant meta data. Fixed naming.
./src/H5O.c
./src/H5Oprivate.h
Access to object headers is always done through a symbol table
entry instead of a file address. Added stubs for opening and
closing object headers to be used when deletion is implemented.
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Changes to error handling.
./src/H5B.c
Increased size of internal static buffers.
./src/H5C.c
Fixed syntax error when NDEBUG is defined.
./src/H5E.c
./src/H5Eprivate.h
./src/H5Epublic.h
Errors can now be printed with H5Eprint(). Other minor
changes to names and arg types.
./src/H5F.c
The base address is now stored in the boot block. The user
block size and the base address are synonyms.
./src/H5Fstdio.c
Fixed a bug with a return value from fseek().
./src/H5H.c
Added alignment constraints to get rid of unaligned access
errors on the DEC alpha having to do with the heap free list.
./src/H5P.c
./src/H5Ppublic.h
Changed some size arguments from int to size_t and fixed
memory allocation calls.
./src/H5T.c
./src/H5Tpublic.h
Changed the order of functions so all the public ones are at
the top of the file. Other minor changes.
./src/H5detect.c
Added a newline to a string constant.
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./src/H5Osdim.c -> H5Osdspace.c
./src/Makefile.in
Changed the names of these files to better reflect what they
actually do.
./src/H5.c
./src/H5AC.c
./src/H5B.c
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5Eprivate.h
./src/H5Epublic.h
./src/H5F.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gshad.c
./src/H5Gstab.c
./src/H5H.c
./src/H5M.c
./src/H5MF.c
./src/H5O.c
./src/H5Osdtyp.c (./src/H5Odtype.c)
./src/H5P.c
./src/H5T.c
./src/H5detect.c
./src/H5private.h
Added an argument to the HRETURN_ERROR(), HGOTO_ERROR(), and
HERROR() macros which is a string error message. This allows
us to give extra information which can't be represented by the
major and minor error numbers. This information was
previously in comments just before or after the macro call.
The string isn't currently used, but I'm planning to change
the test files so they print an error trace when something
fails. This should make debugging a little faster since it's
often obvious what's wrong if we could just see the error
stack without even having to start a debugger.
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./src/H5Cprivate.h
Changed H5Csetparm() to H5Cset_prop() and changed it to pass
property values by value instead of reference. Changed
H5Cgetparm() to H5Cget_prop(). Changed data types of file
creation properties so the application can use `int' or
`size_t' for most properties. Properties and their types are
documented in H5Cget_prop().
Changed H5C_class() to H5Cget_class() to make the naming more
uniform across packages.
./src/H5Cpublic.h
Changed names of properties to make them more uniform across
packages: H5F_USERBLOCK_SIZE became H5F_SIZEOF_USERBLOCK,
H5F_OFFSET_SIZE became H5F_SIZEOF_ADDR, H5F_LENGTH_SIZE became
H5F_SIZEOF_SIZE.
./src/H5D.c
./src/H5Dprivate.h
Added support for chunked data storage. There still isn't any
support for data type conversion or data space conversion, so
chunked storage doesn't do much at this time.
./src/H5E.c
./src/H5Epublic.h
Added the H5E_TEMPLATE major error number. I'm about the
change the HGOTO_ERROR() and HRETURN_ERROR() macros to take an
error string as an additional argument instead of specifying
it as a comment.
./src/H5Fistore.c
Added `const' to the `buf' argument of H5F_istore_write()
although this temporarily causes a compiler warning.
./src/H5Fprivate.h
Changed data types of certain file-related variables from
types like `uint8' to `uintn' since the library data types
should not depend on the file data types.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Moved H5Pget_lrank() to H5Pget_ndims(), and H5Pget_ldims() to
H5Pget_dims() to make naming more uniform. Dimensions should
always be of type `size_t'. Similarly for H5P_get_lrank() and
H5P_get_ldims().
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Removed the interface initialization argument from
FUNC_ENTER() and made it a locally-defined preprocessor
symbol, INTERFACE_INIT.
Changed `offset' to `address' and `length' to `size' in
documentation so it's more consistent. `Offset' still appears
occassionally when it refers to a byte offset within some
other data structure.
Moved interface termination function prototypes from public
header files to .c files and made them static.
./src/H5.c
./src/H5public.h
Added H5init() because it's possible that the predefined data
types are not initialized. This happens only if the first
call to the hdf5 library passes a predefined data type symbol
as an argument. There should be some way to fix this...
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
The free_func returns SUCCEED or FAIL, although the return
value is ignored by H5A. This is so we can use the various
H5*_close() functions to free things.
H5Ainc_ref() and H5Adec_ref() are no longer public. Many of
the other atom functions should also be made private, but I'll
save that for later...
Added additional template groups called H5_TEMPLATE_0 through
H5_TEMPLATE_7 that are used by the various template
subclasses.
Increased the number of bits used for atom groups to prevent
negative atoms.
./src/H5AC.c
./src/H5ACprivate.h
Changed H5AC_new() to H5AC_create() to make names more consistent.
./src/H5B.c
./src/H5Bprivate.h
Changed H5B_new() to H5B_create() to make names more consistent.
./src/H5C.c
./src/H5Cprivate.h
./src/H5Cpublic.h
Now supports multiple subclasses of templates, although it's
done with big switch statements. The default values for
templates are defined in the source file to which that
template belongs. This got rid of lots of needless
preprocessor constants.
Added H5Ccreate() to create a new template. Changed
H5C_release() to H5Cclose() to make the naming more
consistent.
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
Enhanced to use the new dataset interface, and uses the enhanced
data type and data space interfaces, which haven't been
completely implemented. The dataset interface doesn't handle
non-contiguous storage, compression, or data type and space
conversions yet.
./src/H5F.c
./src/H5Fprivate.h
./src/H5Fpublic.h
Removed H5Fflush() since just calls H5F_flush(), which doesn't
do what the user would probably think it does, namely, flush
everything. It only flushes those things sitting in the H5AC
cache and the boot block.
Changed the `file_create_parms' field of H5F_low_t to just
`create_parms' since the `file' part is obvious.
./src/H5Fistore.c
Added some support for external files. Mostly just in the
file format and not supported much by the library yet. I need
to finish some dataset functions first.
Changed H5F_istore_new() to H5F_istore_create() to make names
more uniform across packages.
./src/H5Flow.c
Flushing a file causes the file to be physically extended to
the logical eof. This prevents H5F_open() from thinking a
file has been truncated. Most of the time the file will
already be that large, and when it isn't Unix will often just
allocate the final block anyway.
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gstab.c
Removed H5G_basename()
Removed (temporarily) data type information from symbol table
entries and renamed H5G_CACHED_SDATA to H5G_CACHED_SDSPACE to
reflect that it's a simple data space and has nothing to do
with raw data.
Changed H5G_node_new() to H5G_node_create() and H5G_stab_new()
to H5G_stab_create() to make names more uniform across
packages.
Fixed an undefined address bug that happens when H5G_node_debug()
program doesn't pass enough info to H5G_node_load().
./src/H5H.c
./src/H5Hprivate.h
Changed H5H_new() to H5H_create() to make the names more
uniform across packages.
./src/H5M.c
./src/H5Mprivate.h
./src/H5Mpublic.h
Nulled all the create functions. Most of the other callbacks
are to public functions. Removed H5Mcreate().
Changed hobjtype_t to group_t since it has to be the same
thing anyway.
./src/H5O.c
./src/H5Oprivate.h
./src/H5Osdim.c
./src/H5Osdtyp.c
Changed H5O_SIM_DIM to H5O_SDSPACE (simple data space) since
`simple data space' is its official name, not `simple
dimensions'. Will eventually add H5O_CDSPACE for comples data
spaces. Changed _sim_dim_ to _dspace_.
Replaced H5O_SIM_DTYPE and the compound data type messages
with a single H5O_DTYPE message. Changed _sim_dtype_ to _dtype_.
Changed H5O_STD_STORE to H5O_CSTORE (contiguous storage) since
contiguous storage is not necessarily standard. Changed
_std_store_ to _cstore_ in H5Ocstore.c
Added the H5O_EFL (external file list) message.
Changed H5O_new() to H5O_create() to make names more uniform
across packages.
./src/H5Oefl.c NEW
External file list message for specifying which non-hdf5 files
contain raw data for a dataset.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Renamed and moved data structures to make the names conform to
our naming scheme.
./src/H5T.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5Tpkg.h NEW
Data structures redesigned to be more flexible. The interface
was redesigned to make it more regular and to make some names
more uniform across packages.
./src/H5detect.c
Output was changed to produce a file that conforms to the hdf5
coding standard.
./src/Makefile.in
Generates H5Tinit.c by running H5detect.
./src/debug.c
Moved command argument processing.
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guarantee that
the H5T & H5P interfaces are initialized (from H5D_init_interface)
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The H5D, H5P
& H5T interfaces now share datatypes & dataspaces properly also.
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allocated during
runtime. Isolated but can't figure out how to fix bug reported with purify.
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theres still
a problem with the simple dimensionality caching.
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to the disk
correctly, but only in "native" format. I'm adding the data-type conversions
and checking the reading later today.
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dataspace.
Also tweaked the data structures, and fixed a few bugs.
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cleaned up more
code, etc.
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./src/H5Aproto.h
./src/H5Bproto.h
./src/H5Cproto.h
./src/H5Dproto.h
./src/H5Eproto.h
./src/H5Fproto.h
./src/H5Gproto.h
./src/H5Hproto.h
./src/H5MFproto.h
./src/H5MMproto.h
./src/H5Mproto.h
./src/H5Oproto.h
./src/H5Pproto.h
./src/H5Tproto.h
./src/H5proto.h
These files were removed from the library and renamed by
changing `proto' to `public'.
./src/H5ACpublic.h NEW
./src/H5Apublic.h NEW
./src/H5Bpublic.h NEW
./src/H5Cpublic.h NEW
./src/H5Dpublic.h NEW
./src/H5Epublic.h NEW
./src/H5Fpublic.h NEW
./src/H5Gpublic.h NEW
./src/H5Hpublic.h NEW
./src/H5MFpublic.h NEW
./src/H5MMpublic.h NEW
./src/H5Mpublic.h NEW
./src/H5Opublic.h NEW
./src/H5Ppublic.h NEW
./src/H5Tpublic.h NEW
./src/H5public.h NEW
These files came from the old H5*proto.h files.
./src/Makefile
./src/Makefile.in NEW
Removed. Now generated automatically from Makefile.in by
running configure.
./src/h5oplat.h
./src/hdf5fort.h
./src/hdf5gen.h
./src/hdf5glob.h
./src/hdf5lims.h
./src/hdf5meta.h
./src/hdf5pabl.h
./src/hdf5plat.h
./src/hdf5port.h
./src/hdf5type.h
Removed. The contents of these files has moved to other
header files or source files depending on it's nature.
./src/H5.c
./src/H5A.c
./src/H5B.c
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5H.c
./src/H5M.c
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Ostab.c
./src/H5P.c
./src/H5T.c
Fixed include files. Moved some things from old headers into
these files.
./src/H5ACprivate.h
./src/H5Aprivate.h
./src/H5Bprivate.h
./src/H5Cprivate.h
./src/H5Dprivate.h
./src/H5Eprivate.h
./src/H5Fprivate.h
./src/H5Gprivate.h
./src/H5Hprivate.h
./src/H5MFprivate.h
./src/H5MMprivate.h
./src/H5Mprivate.h
./src/H5Oprivate.h
./src/H5Pprivate.h
./src/H5Tprivate.h
./src/H5private.h
./src/debug.c
Fixed include files.
./src/hdf5.h
This is now the top-level *PUBLIC* include file. It should
never appear in the library *.c files.
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Added an `_g' to the end of library_initialize,
thread_initialize, and interface_initialize to abide by the
naming convention. Removed setting of these variables from
the various initialization functions since it happens in the
FUNC_ENTER() macro now.
Defined PABLO_MASK.
Removed `CONSTR(FUNC,"function_name")' everywhere since it's
handled by the various FUNC_ENTER macros.
Fixed calls to FUNC_ENTER(), FUNC_LEAVE(), and HRETURN_ERROR()
so they don't need so many arguments.
Changed PABLO_TRACE_ON() to FUNC_ENTER() since there is no
longer any danger of infinite recursion.
H5_term_library() now returns SUCCEED/FAIL and uses
FUNC_ENTER/FUNC_EXIT macros.
./src/H5A.c
Changes similar to H5.c.
Most (all?) of the functions called PABLO_TRACE_ON() and the
package doesn't have an interface initializer that I can see,
so the second argument to FUNC_ENTER() is always NULL.
H5A_release_atom_node() returns SUCCEED/FAIL.
./src/H5AC.c
Added error handling.
Arguments for internal functions are checked with assert().
./src/H5C.c
Changes similar to H5.c
Fixed the FUNC variable in H5C_get_default_atom() since it was
initialized to the wrong name.
./src/H5D.c
Changes similar to H5.c
./src/H5E.c
Changes similar to H5.c
Changed the pablo mask from H5_mask to H5E_mask in
H5E_init_interface().
H5Eclear(), H5E_store(), and H5Epush() return SUCCEED/FAIL.
Changed PABLO_TRACE_OFF() calls to FUNC_LEAVE() calls in the
same functions.
./src/H5Eprivate.h
./src/H5Eproto.h
Added additional error symbols for the H5AC package.
Changed prototypes for H5Eclear() and H5Epush().
Changes to HRETURN_ERROR() and HGOTO_ERROR() to reduce the
number of arguments.
./src/H5F.c
Changes similr to H5.c
Changed the pablo mask from H5_mask to H5F_mask for the
FUNC_LEAVE() call of H5F_init_interface().
Added FUNC_ENTER() and FUNC_LEAVE() calls to some functions
that didn't have them.
./src/H5M.c
Changes similar to H5.c
Fixed the FUNC variable in H5M_init_interface() since it was
initialized to the wrong name.
./src/H5P.c
Changes similar to H5.c
./src/H5T.c
Changes similar to H5.c
./src/hdf5gen.c
Changes to FUNC_ENTER() and FUNC_EXIT() to reduce the number
of arguments. FUNC_ENTER() is now safe from infinite
recursion since it updates the library_initialize_g,
thread_initialize_g, or interface_initialize_g variables
before calling the appropriate initialize function.
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