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* [svn-r1732] Changes since 19991007Robb Matzke1999-10-071-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5FDcore.c Includes private headers instead of public in order to use the `UNUSED' macro. ./src/H5FDpublic.h Includes H5public.h just in case. ./src/H5P.c Removed two unused variables in H5P_copy() ./src/H5FDgass.h Fixed a C++ comment after a `#endif' ./src/Makefile.in The H5FDgass.h file is public and must be installed in order for applications to be able to use HDF5. ./tools/h5tools.c Removed an unused variable.
* [svn-r1701] Closed a couple more resouce leaks..Quincey Koziol1999-09-301-0/+1
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* [svn-r1627] Cleanup some minor bugs in the MPIO file-driver ported by Robb.Albert Cheng1999-09-031-2/+2
| | | | It is working now. Still need to tie up some loose ends.
* [svn-r1574] Changes since 19990817Robb Matzke1999-08-181-55/+35
| | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c ./src/H5F.c ./src/H5FDmpio.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Smpio.c The `driver_id' for a file was accidently put in two structs. I removed it from the H5F_file_t struct since it's really an attribute of the VFL stuff. More careful incrementing/decrementing the driver ID to fix a memory leak. ./src/H5P.c Rewrote H5Pcreate() in terms of H5P_copy() of a default property list. This fixes some referencing counting bugs.
* [svn-r1568] Changes since 19990730Robb Matzke1999-08-101-860/+258
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This extensive change is the virtual file layer implementation. I've ported and tested the sec2, family, and core drivers and only ported the mpio driver (Albert will test it). So if you need MPIO I would recommend sticking with the previous version for a while. You will get a few compile warnings about split and stdio drivers not being implemented and possibly tracing information not inserted in some of the drivers. You can safely ignore them but I plan to fix them. I'm still working on the split driver because I just realized that it needs a part of the VFL that isn't written yet. Documentation is being updated also because there were some minor changes (mostly just name changes). It should be available on my web site later this week. ./MANIFEST ./src/Makefile.in ./src/hdf5.h ./src/H5Flow.c [REMOVED] ./src/H5Fstdio.c [REMOVED] ./src/H5Fsec2.c [REMOVED] ./src/H5Fsplit.c [REMOVED] ./src/H5Fmpio.c [REMOVED] ./src/H5Ffamily.c [REMOVED] ./src/H5Fcore.c [REMOVED] ./src/H5MFpublic.h [REMOVED] ./src/H5FD.c [NEW] ./src/H5FDcore.c [NEW] ./src/H5FDcore.h [NEW] ./src/H5FDfamily.c [NEW] ./src/H5FDfamily.h [NEW] ./src/H5FDmpio.c [NEW] ./src/H5FDmpio.h [NEW] ./src/H5FDprivate.h [NEW] ./src/H5FDpublic.h [NEW] ./src/H5FDsec2.c [NEW] ./src/H5FDsec2.h [NEW] Removed/added files for virtual file layer. ./bin/trace ./src/H5.c Removed unused public datatypes and added new VFL public datatypes. Changed an error message. ./config/BlankForm ./config/dec-flags ./config/gnu-flags ./config/hpux10.20 ./config/hpux9.03 ./config/irix5.x ./config/irix6.x ./config/solaris2.x ./config/unicosmk Removed the H5F_OPT_SEEK and H5F_LOW_DFLT constants from the configuration since they're no longer applicable. The default file driver is always the sec2 driver and it always optimizes calls to lseek() or lseek64(). ./config/depend.in C preprocessor errors generated during automatic dependency building are sent to /dev/null to prevent them from appearing twice in the make output. ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oshared.c ./src/H5T.c ./src/H5detect.c ./test/ohdr.c Changed H5F_ADDR_UNDEF to HADDR_UNDEF to be more consistent with the `haddr_t' datatype which is now a public type. ./src/H5D.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5Tconv.c ./test/cmpd_dset.c ./test/dsets.c ./test/overhead.c ./test/tselect.c ./test/tvltypes.c The H5P_DATASET_XFER constant was changed to H5P_DATA_XFER because the properties apply to all types of I/O operations, not just datasets. ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Spoint.c ./src/H5Sprivate.h ./test/big.c ./test/h5test.c ./test/istore.c ./testpar/t_dset.c ./testpar/t_file.c ./tools/h5debug.c ./tools/h5ls.c Modified to work with the virtual file layer by calling H5FD_* functions instead of H5F_low_* functions and by passing file access and data transfer properties by object ID instead of pointer. Changed H5D_transfer_t to H5FD_mpio_xfer_t since the COLLECTIVE vs. INDEPENDENT transfer mode is specific to the MPIO file driver. Moved MPIO-specific stuff into the MPIO driver. ./src/H5B.c ./src/H5D.c ./src/H5Fprivate.h The H5F_mpio_* private functions were renamed and placed in the H5FDmpio driver except those which appeared in H5Smpio.c. ./src/H5E.c ./src/H5Epublic.h Added major error number H5E_VFL for virtual file layer related errors. ./src/H5F.c ./src/H5Fprivate.h Changed the logic that controls whether the boot block is written. Instead of assuming that the first call to write the boot block is only to allocate space, I've added a function argument which makes this explicit. Changed the way files are compared so that a driver-defined comparison function can be called. Files which belong to different drivers are always considered different. Removed H5F_driver_t since file drivers are now identified by object ID instead of a special non-user-extendible datatype. Removed all the hard-coded low-level file properties which have been replaced by the various file drivers. ./src/H5I.c ./src/H5Iprivate.h Added the H5I_inc_ref() which was removed a few months ago since we finally have a use for it. ./src/H5Ipublic.h Added the H5I_VFL object ID type to identify file drivers in the virtual file layer. ./src/H5MF.c ./src/H5MFprivate.h Moved all the allocation/deallocation code into the virtual file layer which allows file drivers to override much of it. ./src/H5P.c ./src/H5Ppublic.h Moved file driver-specific code into the various file driver files. The H5Pcopy() and H5Pclose() functions make calls into the virtual file driver to manage the memory for driver-specific file access and data transfer properties. ./src/H5private.h ./src/H5public.h The `haddr_t' type is now public. ./test/tfile.c Added a few more comments.
* [svn-r1549] Changes since 19990728Robb Matzke1999-07-281-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c [1.3] ./src/H5D.c [1.3] ./src/H5F.c [1.3] ./src/H5Farray.c [1.3] ./src/H5Fcore.c [1.3] ./src/H5Ffamily.c [1.3] ./src/H5Fistore.c [1.3] ./src/H5Flow.c [1.3] ./src/H5Fmpio.c [1.3] ./src/H5Fprivate.h [1.3] ./src/H5Fsplit.c [1.3] ./src/H5Fstdio.c [1.3] ./src/H5G.c [1.3] ./src/H5HG.c [1.3] ./src/H5HL.c [1.3] ./src/H5MF.c [1.3] ./src/H5O.c [1.3] ./src/H5Odtype.c [1.3] ./src/H5Oefl.c [1.3] ./src/H5P.c [1.3] ./src/H5Smpio.c [1.3] ./src/H5T.c [1.3] ./src/H5detect.c [1.3] ./tools/h5debug.c [1.3] Some of the H5F_addr_* functions were optimized away. ./src/H5D.c [1.3] Fixed the return values from NULL to FAIL on one MPI-IO function.
* [svn-r1548] Changes since 19990727Robb Matzke1999-07-281-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c [1.3] ./src/H5AC.c [1.3] ./src/H5ACprivate.h [1.3] ./src/H5B.c [1.3] ./src/H5Bprivate.h [1.3] ./src/H5D.c [1.3] ./src/H5F.c [1.3] ./src/H5Farray.c [1.3] ./src/H5Fcore.c [1.3] ./src/H5Ffamily.c [1.3] ./src/H5Fistore.c [1.3] ./src/H5Flow.c [1.3] ./src/H5Fmpio.c [1.3] ./src/H5Fprivate.h [1.3] ./src/H5Fsec2.c [1.3] ./src/H5Fsplit.c [1.3] ./src/H5Fstdio.c [1.3] ./src/H5G.c [1.3] ./src/H5Gent.c [1.3] ./src/H5Gnode.c [1.3] ./src/H5Gprivate.h [1.3] ./src/H5Gstab.c [1.3] ./src/H5HG.c [1.3] ./src/H5HGprivate.h [1.3] ./src/H5HL.c [1.3] ./src/H5HLprivate.h [1.3] ./src/H5MF.c [1.3] ./src/H5MFprivate.h [1.3] ./src/H5O.c [1.3] ./src/H5Oattr.c [1.3] ./src/H5Ocont.c [1.3] ./src/H5Odtype.c [1.3] ./src/H5Oefl.c [1.3] ./src/H5Olayout.c [1.3] ./src/H5Oprivate.h [1.3] ./src/H5Oshared.c [1.3] ./src/H5Ostab.c [1.3] ./src/H5P.c [1.3] ./src/H5R.c [1.3] ./src/H5Smpio.c [1.3] ./src/H5T.c [1.3] ./src/H5Tvlen.c [1.3] ./src/H5private.h [1.3] ./test/dtypes.c [1.3] ./test/gheap.c [1.3] ./test/istore.c [1.3] ./test/lheap.c [1.3] ./test/ohdr.c [1.3] ./tools/h5debug.c [1.3] File addresses (the `haddr_t' type) are passed by value instead of by reference. The type is no longer a struct. This is one of the preliminary changes needed for the Virtual File Layer stuff. ./src/H5Fprivate.h [1.3] ./src/H5Flow.c [1.3] Some address functions were rewritten as macros.
* [svn-r1476] ./src/H5D.c [1.2, 1.3]Robb Matzke1999-07-131-0/+3
| | | | | | | | ./src/H5P.c [1.2, 1.3] ./src/H5T.c [1.2, 1.3] Added definitions for H5D_operator_t, H5MM_allocate_t, and H5MM_free_t and regenerated tracing calls for the affected API functions.
* [svn-r1418] Modified H5Tconvert to require a dataset transfer property ↵Quincey Koziol1999-07-031-1/+88
| | | | | | | | | | | | | list ID as the final parameter (so that VL datatypes have a way to pass in the custom memory allocation routines). Fixed a conversion bug when VL fields were part of a compound datatype that was causing the no-op conversion routine to be used instead of the vlen routine. Added the H5Pset_vlen_mem_manager and H5Pget_vlen_mem_manager routines to allow users to provide their own custom memory allocation routines for VL data read in from the file and reclaimed with H5Dvlen_reclaim. Finished coding on H5Dvlen_reclaim so it works now.
* [svn-r1362] Robb Matzke1999-06-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changes since 19990616 ---------------------- ./src/H5T.c ./src/H5Tconv.c All conversion functions take an extra argument called `stride' which is the number of bytes to advance the source and destination pointers after each element is converted. If the value is zero then the old behavior is preserved (source and destination values are packed). This feature was necessary to implement the compound datatype conversion optimizations and it causes a minor change to the API (application-defined type conversion functions take an extra size_t stride argument). ./src/H5Tconv.c An additional compound data type conversion function was added which is applied unless the destination type is larger than the source type. I'm measuring significant performance increases for certain operations: Test Name Struct-Conv Noop-Conv New(Old) MB/s New(Old) MB/s ---------- ------------- ------------- Reordering 2.062(0.3936) 54087(0.9047) Subsetting 2.901(0.6581) 40192(1.1100) Shrinking 1.976(0.3925) 33628(1.1500) ---------- ------------- ------------- ./test/dtypes.c Added various compound datatype conversion tests. Fixed return values from functions. ./src/H5T.c Conversion timers are updated only if H5T debugging is turned on a runtime (in addition to compile time). This allows the data type layer to be compiled with debugging support without having to pay a big runtime penalty if the debugging isn't actually used. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Added the stride argument to the H5T_convert() calls. The stride is always zero, which means that the source and destination data values are packed. ./configure.in ./configure [REGENERATED] If API tracing is turned off then libhdf5.settings will say `no' instead of nothing. ./test/flush1.c ./test/flush2.c Added better error messages in a couple places.
* [svn-r1224] Changes since 19990426Robb Matzke1999-04-271-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5tools.c ./tools/h5tools.h Finally fixed a long-standing bug that caused core dumps if a compound datum rendered to more than some number of characters (we kept bumping up the limit at the risk of violating stack size limits on some machines). The fix works only on systems that have the vsnprintf() function (otherwise a 4kB limit is imposed, which if violated probably dumps core). If vsnprintf() is present then the library dynamically allocates space for the output string. Also made it possible to control how compound data is rendered across multiple lines of output by allowing the caller to specify where optional line-breaks get inserted. The output functions split up the value at one or more optional line-breaks to prevent it from wrapping around the screen. If a datum doesn't fit on the current line but would fit on the next line then it is printed on the next line regardless of whether optional line-breaks would have prevent wrapping around the screen. This makes it easier to find the beginnings of compound data values. This feature is disabled by default but can be enabled by the application. If a datum doesn't fit on the current line and the previous datum also occupied more than one line then we move to the next line before printing. This makes it easier to find the beginnings of compound data values but prevents the output from looking fragmented if there are only a few long values among mostly short values. This feature is disabled by default but can be enabled by the application. The application can control the printf() formats used for all the native data types. The defaults are what the library used to use: %g, %ld, %lu, %d, and %u ./tools/h5ls.c Compound datatype values can now be split across multiple lines of output instead of just wrapping. Also, when lots of compound values are too long they all start at the beginning of a line. This only required about 10 lines of changes in the setup for tools library calls (I didn't modify the h5dump program because it uses its own version of the tools library that forked off long ago). Added code for Win32 which is unable to cast `unsigned long long' to `double'. If the dataset size exceeds (2^63)-1 then the percent utilization is not displayed (this is easily possible with chunked datasets). This is untested yet. ./configure.in ./src/H5config.h.in ./src/H5.c ./src/H5private.h Check for vsnprintf() and provide a simple, stupid definition if it isn't available. The stupid definition just calls vsprintf() and ignores the second argument. This can result in buffer overflows in h5ls and h5dump since vsprintf() is an unsafe function (and anyone can create an hdf5 file that runs an arbitrary command from h5ls and h5dump in that case)! ./config/conclude.in Remove more *.o files for `make clean' ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c Cleaned up a memory leak during H5_term_library() by allowing H5I_clear_group() to skip items that couldn't be freed. This allows the item to remain in the group until we can free it later. ./src/H5F.c The H5F_close_all() function fails if a file cannot be closed.
* [svn-r1216] Changes since 19990423Robb Matzke1999-04-261-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c Changed H5F_block_read/write() to take a file transfer property list instead of just a parallel I/O mode. This will allow us to pass additional parameters to the I/O functions without having so many arguments to worry about. This fixes a bug I introduced last Friday for parallel HDF5 ./src/H5B.c Fixed decoding of B-tree keys when iterating through the leaves of the B-tree. This fixes a bug for applications that are adding new entries to groups and also listing the groups.
* [svn-r1213] Added better error message for attemping to close a default ↵Quincey Koziol1999-04-231-3/+4
| | | | property list.
* [svn-r1204] Changes since 19990415Robb Matzke1999-04-231-13/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed automatic dependencies. We were storing dependencies for *.o files instead of *.lo files after shared libraries were added. ./config/gnu-flags ./config/linux-gnulibc1 Moved `-march=pentiumpro -mcpu=pentiumpro -malign-double' from the linux file to this file and caused it to depend on the CPU name. This fixes one of Elena's bugs. ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gnode.c ./src/H5P.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Tpublic.h ./test/istore.c Added an H5Dget_storage_size() function that reports the amount of storage allocated for raw data in a dataset. Changed H5D_xfer_* to H5F_xfer_* because these properties are more general than datasets. This also allows some of the lower-level I/O functions to get this information easier. ./src/H5S.c ./src/H5Sall.c Added two new functions H5S_all_read() and H5S_all_write() which are optimizations that copy data directly between file and memory without having to go through the scatter gather step. This knocks quite a bit of time off the I/O and reading/writing entire datasets is a fairly common operation. ./tools/h5ls.c Reports the logical size of data, the allocated size of data, and the percent utilization. ./MANIFEST Removed old pablo files, added new files. Snapshots should now start to work again. ./src/H5D.c ./src/H5Fmpio.c Removed two warnings signed vs. unsigned comparisons and check for overflow.
* [svn-r1184] Changes since 19990402Robb Matzke1999-04-151-5/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/commence.in ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in Fixed so private libraries are not installed publicly. The installation directories `bin', `include', and `lib' are created mode 755. ./src/H5.c ./src/H5A.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Vprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h ./test/chunk.c ./test/dsets.c ./test/dtypes.c ./test/h5test.c ./test/overhead.c ./test/ragged.c ./test/tattr.c ./tools/h5dump.c ./tools/h5findshd.c ./tools/h5ls.c Changed `__unused__' to `UNUSED' to fix a conflict with GNU header files. ./src/H5Tpkg.h ./test/h5test.h Removed __unused__ from forward function declarations. ./src/H5P.c Removed a comment about restrictions for the type conversion temporary buffers. Thanks to Quincey, the comment no longer applied. ./src/H5T.c Relaxed the H5Tpack() a little so it would pack compound data structures that had non-transient atomic members. ./tools/h5ls.c Added a `-g' (or `--group') flag that causes information to be printed about the specified group instead of the group's contents. (sort of like Unix's `ls -d'). The `-g' can be used in combination with `-r' to print information about the group and its contents.
* [svn-r1169] ./configure.inRobb Matzke1999-03-301-8/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5D.c ./src/H5O.c Removed H5AC, H5B, and H5T from the default list of packages to debug (because they're pretty expensive debugging), and added H5O. Also fixed a bug for undefined variable in H5D when H5S debugging is turned on but H5T debugging is turned off. ./config/conclude.in Fixed installation of header files for building in a directory other than the source directory. This fixes a bug where H5config.h wasn't being installed. ./src/H5.c ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Tprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Changed the way the library shuts down again. Now it handles cycles between packages and isn't so sensitive to dependencies between packages. A package might shut down only to be restarted to process a request from some other package being shut down. Loops are detected after 100 iteractions and the shutdown is aborted with a message on standard error. This also makes it a lot easier to debug. ./src/H5A.c Fixed H5A_write() and H5A_read() so they pass a non-null background buffer to the conversion functions. This is necessary when an attribute has a compound data type. ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c Reindented new Win32 stuff. ./src/H5Odtype.c Fixed a bug when enumeration types are used in a compound data type. The byte pointer wasn't incremented after the type information was written. ./tools/h5ls.c Compound data types display their total size because it's not always obvious from looking at the members. Scalar attributes show their space as `scalar' instead of `{}'. The index value is not printed for attributes that have only a few values. Instead the word `Data:' is printed on the first line of attribute data. Named types display their data type only if verbose output was requested.
* [svn-r1101] Changes since 19990219Robb Matzke1999-02-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/irix64 The old (-32) compiler is now supported by setting envrionment CC='cc -32'. The -64 compiler is the default or you can set CC='cc -64'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5G.c ./src/H5I.c ./src/H5Ocomp.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Z.c ./src/H5detect.c ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/enum.c ./test/mtime.c ./test/ohdr.c ./tools/h5ls.c Fixed lots of warnings on Irix64. Mailed a few remaining warnings in H5S to Quincey and a few in the dumper to Ruey-Hsia.
* [svn-r1087] Changes since 19990218Robb Matzke1999-02-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5F.c ./src/H5private.h ./src/H5Ipublic.h ./src/H5O.c Fixed a rather nasty bug with file closing that caused the file boot block to be updated incorrectly, effectively truncating the file. The bug I fixed was triggered by: 1. Create a file, F 2. Open an object, X 3. Close file F 4. Reopen file F for read/write. 5. Create and close some objects 6. Close file F 7. Close library (exit). Step 3 pended the close because object X is still open, but the file ID was removed from the H5I_FILE ID group. Step 4 created a new file because it didn't see any matching file on the H5I_FILE ID group. Step 5 extends the file. Step 6 writes the new file boot block to disk. Step 7 closes object X and completes the close from step 3, writing the old boot block information to disk. The new behavior is that step 3 moves the file from the H5I_FILE group to the H5I_FILE_CLOSING group. Step 4 searches both groups and finds the file. Step 5 extends the file using the same H5F_file_t struct as step 3. Step 6 closes the H5F_t struct opened in step 3 but not the H5F_file_t struct shared by steps 1 and 3. Step 7 closes object X which closes the H5F_file_t from step 1, flushing the boot block which was shared by all steps. ./src/H5F.c Added some bulletproofing to file reference counting and removed comments which no longer apply. Added H5F_flush_all() and H5F_close_all() which apply to all files. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c Added the new H5I_free_t data type to describe the function type to be passed as the `free_func' argument to H5I_init_group(). ./src/H5I.c Bulletproofed the object removal functions. Removed comments which no longer apply. Changed global variable names so they don't violate the naming scheme. Added H5I_debug() that prints the contents of an ID group. Removed H5I_inc_ref() because it isn't used. Reindented a couple of functions. ./src/H5.c ./src/H5G.c ./src/H5Ipublic.h Changed H5I_MAXID to H5I_NGROUPS to better relect the fact that it's the total number of valid ID groups. ./src/H5Shyper.c Changed hyperslab offset arrays to signed quantities to get rid of warnings on DEC cluster. ./src/H5Flow.c ./src/H5Fprivate.h Changed the objno argument of H5F_addr_pack() to be unsigned to get rid of warnings on DEC cluster.
* [svn-r971] Changes since 19981214Robb Matzke1998-12-171-22/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warning that enabling debugging code can adversely affect performance even when the debugging isn't turned on at run-time. Performance testing shows that under certain circumstances (like data type conversions of compound types) the H5_timer functions, although only a few lines each, contribute a fairly large percent to the execution time. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tpublic.h Improved the H5Tunregister() function to make unregistering more flexible. It takes the same arguments as H5Tregister() but also accepts wild cards. All conversion functions that match the H5Tunregister() search criteria are removed from the global type conversion table. The H5Tregister_hard() and H5Tregister_soft() were combined into a single function called H5Tregister() which is the counterpart to H5Tunregister(). A new `persistence' argument was added to differentiate between the two types of conversion functions. The application is allowed to register a hard conversion function for the no-op conversion path although the library isn't obligated to call it (it usually does). This is mostly for completeness, but the application might use it to help determine if the raw data pipeline was able to use the optimized path for the case when no type conversion is necessary. The library doesn't allow this path to be unregistered although the application can redefine it as often as it likes. Fixed the type conversion tables in preparation for MT-safety and to fix previosly-known design bugs wrt. unregistering conversion functions or changing the C function associated with a conversion path. The MT-safety stuff is documented in a separate white paper. Increased the conversion function debugging name from 9 characters to 31 characters so the output can be more descriptive. Moved conversion path statistics from the H5T_cdata_t member into the conversion path itself. This makes H5T_cdata_t contain only application-visible data structures. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c Improved the way type conversion functions are called so the caller doesn't have to check for data type debugging and increment type conversion timers and statistics. Changed check for no-op conversion since it is now application-definable and there may even be more than one definition at a time in a multi-threaded application (one thread might be using the no-op conversion path when some other thread changes its definition -- the first thread still sees the original defintion until it's done with the operation). ./doc/html/Datatypes.html Updated the user guide to reflect the changes to data type conversion registration functions. ./bin/trace ./src/H5.c Added tracing support for the new H5T_pers_t data type. ./test/dtypes.c Added printf to display alignment value if non-aligned data types are being tested. ./test/h5test.c Modified the H5Tunregister() calls to use the new arguments. All 94 of those calls can be replaced by a single call to the new H5Tunregister() function. ./src/H5.c Added HAVE_GETTIMEOFDAY around an auto variable and initialized the elapsed time to zero when gettimeofday() is not available. ./src/H5F.c ./src/H5Fprivate.h ./src/H5P.c Added an H5*_init() functions which do the same thing as H5*_init_interface() but can be called from other packages and don't do anything if the interface is already initialized. This fixes a couple memory leaks in applications that repeatedly close and open the library with H5close(). ./src/H5Tconv.c Optimized some data alignment code in the hardware conversion functions. Hardware conversions accumulate statistics about source and destination data alignment and print that information when the conversion function is unregistered (usually when the application exits) if data type debugging is compiled into the library and enabled at run-time. The conversion caching was cleaned up for the compound data type conversion function. It now caches conversion paths in a manner that will be MT-safe and is much simpler than the old method. Also cleaned up some array index maps. ./src/H5detect.c Fixd mispelling of alingemnt. ./src/H5private.h Changed `TRUE' to `1' in assignment to interface_initialize_g in FUNC_ENTER macro definition. ./tools/testh5dump.sh Completely rewritten to make it shorter, better documented, and conforming to most of the other test outputs. The comparison of the actual output with the expected output is insensitive to differences in white space. The test now passes for the first time on Linux where the output width wasn't as expected but the output was otherwise correct. ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl ./tools/testfiles/tall-3.ddl ./tools/testfiles/tattr-1.ddl ./tools/testfiles/tattr-2.ddl ./tools/testfiles/tattr-3.ddl ./tools/testfiles/tattr-4.ddl ./tools/testfiles/tcomp-1.ddl ./tools/testfiles/tcomp-2.ddl ./tools/testfiles/tcomp-3.ddl ./tools/testfiles/tcomp-4.ddl ./tools/testfiles/tdset-1.ddl ./tools/testfiles/tdset-2.ddl ./tools/testfiles/tdset-3.ddl ./tools/testfiles/tdset-4.ddl ./tools/testfiles/tgroup-1.ddl ./tools/testfiles/tgroup-2.ddl ./tools/testfiles/tgroup-3.ddl ./tools/testfiles/tlink-1.ddl ./tools/testfiles/tlink-2.ddl ./tools/testfiles/tlink-3.ddl ./tools/testfiles/tlink-4.ddl ./tools/testfiles/tlink-5.ddl ./tools/testfiles/tslink-1.ddl ./tools/testfiles/tslink-2.ddl Changed `../h5dump' to just `h5dump'. ./config/alpha-dec-osf4.0 Added more warning and optimization switches to the native compiler.
* [svn-r949] Changes since 19981124Robb Matzke1998-11-251-2/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5T.c Fixed a typo in the registration of the `unsigned char' to `unsigned long long' type conversion that caused it to not be registered, falling back to software whenever that conversion path was taken. ./MANIFEST ./test/Makefile.in ./test/testhdf5.c ./test/testhdf5.h ./test/theap.c [REMOVED] ./test/lheap.c [NEW] ./test/tohdr.c [REMOVED] ./test/ohdr.c [NEW] ./test/tstab.c [REMOVED] ./test/stab.c [NEW] Removed the `t' from the front of these names and made each test a stand-alone program following the format of most of the other tests. ./test/big.c Uses libh5test.a but always sets the low-level driver to 1GB file family. The `#if' near the top to set the data space to 8GB has been simplified now that `long_long' is always defined and the error message is improved when `long_long' isn't wide enough. Cleanup code was added to the error handling. ./test/gheap.c ./test/istore.c Uses libh5test.a. Added error cleanup code. ./test/dtypes.c ./test/h5test.c Added 68 new tests that check hardware and software conversions between `long long' and `unsigned long long' and the other integer types. The tests only run on machines where sizeof(long_long)!=sizeof(long). We test a total of 180 different integer conversions, half in hardware and half in software. Cut down the number of times each test is run from 5 to 1 so it doesn't take so long. If you want to run more times there's a constant that can be changed at the top of the file. ./test/extend.c Removed unused variable. ./test/h5test.c ./test/h5test.h ./test/external.c ./test/fillval.c The h5_cleanup() returns true/false so it can be used in an `if' statement to clean up additional files. ./doc/html/Environment.html Indented. Added HDF5_PREFIX and HDF5_DRIVER descriptions. ./src/H5P.c Changed the trace type for the second argument from `Iu' to `x' since it's an output parameter. ./INSTALL Added a warning that the GNU zlib that comes with the latest version of HDF4 is too old to use with HDF5 and must be renamed so configure doesn't see it when `--enable-hdf4' is used.
* [svn-r947] Lots of patches to enable dataset region references. The testing ↵Quincey Koziol1998-11-251-0/+78
| | | | | | for these need to be finished and checked in still.
* [svn-r936] Changes since 19981119Robb Matzke1998-11-211-17/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5A.c ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5HG.c ./src/H5HL.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5MF.c ./src/H5MM.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sselect.c ./src/H5T.c ./src/H5TB.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Most of these changes are because the `interface_initialize_g' variable change from hbool_t to int. It's a one line change. Changed the way the library is closed so we have more control over the order the interfaces are shut down. Instead of registering an atexit() function for every interface in some haphazard order we just register one: H5_term_library() which then calls the H5*_term_interface() functions in a well-defined order. If the library is closed and then reopened repeatedly by calling H5close() and H5open() in a loop we only add one copy of the library termination functions with atexit(). Termination is a two-step process in order to help detect programming errors that would cause an infinite loop caused by the termination of one interface waking up some other previously terminated interface. The first step terminates the interface and *marks it as unusable*. After all interfaces are terminated then we mark them all as usable again. The FUNC_ENTER() macro has been modified to return failure or to dump core (depending on whether NDEBUG is defined) if we try to call an interface while it's shutting down. ./src/H5.c The H5dont_atexit() function returns failure if it's called more than once or if it's called too late. However, the error stack is not automatically printed on failure because the library might not be initialized yet ./test/chunk.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/overhead.c ./test/ragged.c Changed the extra cast for Win32 so we do floating point division again -- it was just confusion about precedence and associativity of casting and the C coercion rules. Removed extra carriage returns inserted by broken operating system. ./src/H5Ffamily.c Fixed an bug where H5F_fam_write() lowered the EOF marker for one of the family members causing H5F_fam_read() to read zeros. ./test/h5test.h [NEW] ./test/h5test.c [NEW] ./test/Makefile.in ./test/bittests.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c Support library for test files. This isn't done yet but Katie's contractions are ~10 minutes apart so I figured I better back this stuff up just in case I'm not here next week... Eventually all test files will understand HDF5_DRIVER to name the low level file driver and parameters so we can easily test various drivers. They will also understand HDF5_PREFIX to prepend to the beginning of file names which is necessary for testing ROMIO with various drivers. Also, the cleanup function will know how to use the file name prefix and will understand different file driver naming schemes like file families. I'm not sure they'll understand the `gsf:' type prefixes yet. Note, the external test is completely commented out because I'm in the middle of modifying it. It will still compile and run but it doesn't test anything at the moment.
* [svn-r925] Changes since 19981116Robb Matzke1998-11-181-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL.parallel [NEW] We're beginning to unify some of the parallel installation steps. This file will contain general information for installing the parallel library. It's not complete yet. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Check for xdr_int() in libnsl required on Solaris when linking with hdf4. It's found on the Irix system I tested which complains that `-lnsl' didn't resolve any symbols. Oh well. Fixed the order of searching for libdf and libmfhdf for hdf4 linking. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5Z.c Check for compress() in libz in order to find older versions of the library that will still work for hdf4. Added a separate check for compress2() that hdf5 will use. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Sselect.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./test/bittests.c ./test/gheap.c ./test/hyperslab.c ./test/istore.c ./test/tmeta.c ./test/trefer.c ./test/tselect.c ./tools/h5debug.c ./tools/h5tols.c Added checks for Posix.1g types like `int8_t'. If not defined then H5private.h defines them. Changed all `int8' etc. to `int8_t'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Calling H5*_term_interface() resets interface_initialize_g to FALSE so a subsequent call to H5open() (implied or explicit) reinitializes global variables properly. ./src/H5private.h ./src/H5Oefl.c ./src/H5S.c Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they match the Posix.1 constants in <limits.h>. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5detect.c Added 36 more integer hardware conversion functions to the type conversion table for conversions to/from `long long' and `unsigned long long'. The `long long' names will be changed shortly to make them portable to Win32. Changed H5T_init() to H5T_native_open() and added an H5T_native_close() to open and close the predefined native data types. Increased the initial size of the type conversion table from 64 to 128 entries. Reordered the 90 new integer conversion functions so the names that are printed favor `int' over `short' or `long' when two of them are the same. ./test/dtypes.c Added hardware and software integer conversion tests for the 56 functions I added recently but not the additional 36 checked in this time. That will come next. Call H5close() after each test so type conversion statistics are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes Added more debugging output for when things go wrong. ./src/H5private.h Removed trailing carriage-returns inserted by broken operating system ;-)
* [svn-r859] Changes since 19981030Robb Matzke1998-11-021-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new Pablo files HDF5record_RT.h and ProcIDs.h ./acconfig.h ./configure [REGENERATED] ./configure.in ./src/H5.c ./src/H5Vprivate.h ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5public.h ./test/big.c Added more configuration stuff for the Win32 environment. Removed all the #ifdef WIN32 from the source and replaced them with OS-independent stuff. Specifics follow: Check for non-Posix.1 `st_blocks' field in `struct stat' which is used by the big file test to decide if the file system supports holes. If the st_blocks field isn't present then we just skip the test. Configure checks for <io.h> <sys/resource.h> <sys/time.h> and <winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H, HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found. Configure checks whether both <sys/time.h> and <time.h> can be included and defines SYS_TIME_WITH_TIME if so. Otherwise include only <sys/time.h> or <time.h> even if both exist. Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the result or to zero if __int64 isn't defined. The source uses `long long' in preference to `__int64'. Removed null WIN32 definition for `inline' since such a definition already exists in H5config.h Protected gettimeofday() calls in debugging code with HAVE_GETTIMEOFDAY instead of WIN32. ./src/H5F.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.h ./src/H5P.c ./src/H5Tconv.c ./src/H5private.h Removed #include of system files from library source files and consolodated them into H5private.h where they're protected by various configuration macros (most of them were duplicated there already anyway). ./test/big.c ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c ./test/fillval.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/mtime.c ./test/overhead.c ./test/ragged.c ./test/shtype.c ./test/unlink.c Protected system #include's with #ifdef's from H5config.h. Undefined NDEBUG since some of the tests rely on assert() to check return values. Removed WIN32 definitions for __unused__ since this can be controlled by the definition of HAVE_ATTRIBUTE in H5config.h ./test/testhdf5.h Removed the CLEAN_CMD definition because we no longer use it. Albert's cleanup() functions replaced it. ./test/fillval.c Initialized auto hid_t variables to fix warnings in error recovery code when data flow analysis is turned on in compilers. ./test/h5tools.c Initialized an auto variable to fix a compiler warning. ./test/chunk.c ./test/ragged.c The WIN32 had some unsigned variables changed to signed because the compiler generates warnings when coercing unsigned to double(?). I changed them back to unsigned because they really are unsigned quantities. If this the change was just to shut up extraneous warnings then perhaps a compiler flag can do the same; otherwise if the compiler generates bad code then we should supply a patch file instead messing up source code with bug work-arounds. ./src/H5detect.c Protected system #include's with #ifdef's from H5config.h thereby removing a WIN32. If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that `struct passwd' doesn't exist either (we don't really need it in that case). The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of `long long' or else `__int64' or else `long' depending on what's available. ./src/H5Flow.c ./src/H5Ofill.c Added __unused__ to some function arguments that aren't used when assertions are turned off. ./src/H5V.c Changed an auto variable name in some hand-inlined code to get rid of a warning about the variable shadowing a previous auto.
* [svn-r797] Changed comments from returning "SUCCEED/FAIL" to ↵Quincey Koziol1998-10-261-133/+59
| | | | | | "non-negative/negative" and also fixed a few more explicit checks against FAIL.
* [svn-r795] Changes since 19981026Robb Matzke1998-10-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./test/th5s.h5 [NEW] ./test/th5s.c Added a test to make sure that creating a data space with too large a rank fails. Added a test to make sure that reading a file that has a dataset with a space with too large a rank fails. Actually, this one is a little weird: the code that reads the data space message assumes the space is scalar if the message cannot be read. Fortunately the layout message fails also, preventing the dataset from being opened. However, since the data type message is still visible h5ls will report that the object is a named data type. ./test/space_overflow.c [NEW] This is the little program that makes the th5s.h5 file. ./src/H5A.c ./src/H5R.c ./src/H5Sselect.c Updated trace info. ./src/H5Olayout.c ./src/H5Osdspace.c Added code to fail if the dimensionality is too large when decoding a layout or simple data space message. ./src/H5Oprivate.h Redefined H5O_LAYOUT_NDIMS in terms of H5S_MAX_RANK. ./src/H5P.c ./src/H5S.c Check for ndims>H5S_MAX_RANK in API function calls, added assert to internal functions. ./src/H5V.c Changed a `<' to an `<=' in an assert. ./test/flush2.c Includes stdlib.h for getenv(). ./tools/h5tools.c Able to handle up to H5S_MAX_RANK dimensions during output.
* [svn-r745] Changes since 19981002Robb Matzke1998-10-081-1/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/H5.format.html ./src/H5HG.c Fixed a bug in the global heap that caused H5HG_read() to write past the end of the buffer in certain cases. ./test/big.c The test is skipped if hdf5 was configured with `--disable-hsizet'. ./src/H5Ofill.c Data type conversions are implemented for the fill value. ./src/H5.c Tracing prints one of H5P_FILE_CREATE, H5P_FILE_ACCESS, H5P_DATASET_CREATE, H5P_DATASET_XFER, or H5P_MOUNT instead of the more cryptic H5I_TEMPLATE_* constants. ./src/H5D.c Removed prototype for H5D_find_name(). ./src/H5I.c The GROUP_MASK and ID_MASK are both calculated from GROUP_BITS instead of being set by hand. We don't use the sign bit of hid_t; all valid hid_t values are positive so we can say things like `if ((file=H5Fopen(...))<0)'. Changed `(int)pow(2.0,x)' to `1<<x' so we don't have to worry about rounding. Fixed H5I_get_type() so it doesn't always fail an assertion. ./src/H5E.c ./src/H5Epublic.h Added minor error H5E_MOUNT ./src/H5F.c ./src/H5Fprivate.h Added H5Fmount() and H5Funmount(). Mounting and unmounting works as documented but some of the other things aren't implemented yet, the biggest being current working groups always acting on the root of the mount tree, and H5Fclose() closing the entire tree. The rest of the stuff will be added shortly... ./src/H5P.c ./src/H5Ppublic.h Added the H5P_MOUNT property list but haven't implemented any particular properties for it yet. ./src/H5Gstab.c Hard links across files return an error instead of failing an assertion.
* [svn-r737] Changed H5I groups to have a H5I_ prefix before them, to better ↵Quincey Koziol1998-10-051-19/+19
| | | | | | align with the library.
* [svn-r733] Robb Matzke1998-10-011-12/+200
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changes since 19980930 ---------------------- ./MANIFEST ./doc/html/H5.format.html ./src/H5D.c ./src/H5Dprivate.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ofill.c [NEW] ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/Makefile.in Added fill values as documented in previous e-mails. They only work for chunked datasets so far. ./src/H5E.c ./src/H5Epublic.h ./src/H5P.c Changed H5E_TEMPLATE to H5E_PLIST. ./src/H5Omtime.c ./src/H5V.c Fixed a typo in a comment. ./src/H5Tconv.c Fixed a bug in compound type conversions that caused an assertion to fail.
* [svn-r730] Changes since 19980928Robb Matzke1998-09-301-0/+97
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Changed freebsd2.2.1 to freebsd2.2.7 to match change in file name. Added a few missing files. Are all of these supposed to be distributed? ./tools/testfiles/h5dumptst.c + ./tools/testfiles/tall-1.ddl + ./tools/testfiles/tall-2.ddl + ./tools/testfiles/tall-3.ddl ./tools/testfiles/tall.ddl ./tools/testfiles/tall.h5 + ./tools/testfiles/tattr-1.ddl + ./tools/testfiles/tattr-2.ddl + ./tools/testfiles/tattr-3.ddl + ./tools/testfiles/tattr-4.ddl ./tools/testfiles/tattr.ddl ./tools/testfiles/tattr.h5 + ./tools/testfiles/tdset-1.ddl + ./tools/testfiles/tdset-2.ddl + ./tools/testfiles/tdset-3.ddl + ./tools/testfiles/tdset-4.ddl ./tools/testfiles/tdset.ddl ./tools/testfiles/tdset.h5 + ./tools/testfiles/tgroup-1.ddl + ./tools/testfiles/tgroup-2.ddl + ./tools/testfiles/tgroup-3.ddl ./tools/testfiles/tgroup.ddl ./tools/testfiles/tgroup.h5 + ./tools/testfiles/tslink-1.ddl + ./tools/testfiles/tslink-2.ddl ./tools/testfiles/tslink.ddl ./tools/testfiles/tslink.h5 ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dprivate.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Gstab.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./test/istore.c Implemented split ratios as documented in previous e-mails. Frank, the new API functions are H5Pget_btree_ratios() and H5Pset_btree_ratios(). ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h Added more type checking for the data transfer property list passed to these functions. ./src/H5D.c Added a dataset transfer property list as an argument to H5D_allocate() for the parallel version in order to pass split ratios down to H5F_istore_lock(). Eventually we won't need the split ratios for H5D_allocate() because we'll build a completely full B-tree from the leaves up, but it might be useful to have other transfer properties at that level anyway. I always caled H5D_allocate() with &H5D_dflt_xfer. ./MANIFEST ./test/Makefile.in ./test/overhead.c [NEW] Added an `overhead' test run by `make timings'.
* [svn-r720] Changes since 19980922Robb Matzke1998-09-241-16/+28
| | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5F.c ./src/H5Fprivate.h ./src/H5P.c ./src/H5Ppublic.h ./test/chunk.c ./test/dsets.c The number of slots in the raw data cache can be queried or set with H5Pget/set_cache(), which now take an extra argument. The default number of slots is 521 and the default maximum size is 1MB. ./src/H5Fistore.c ./src/H5Fprivate.h Finished optimizations. The cache is now a hash and a linked list instead of an array. The cpu time on my machine for H5F_istore_lock() has been cut by 60% and H5F_istore_unlock() by 35%.
* [svn-r712] Added temporary buffer support to several places in the library ↵Quincey Koziol1998-09-211-0/+84
| | | | | | | which were calling malloc too often. Also, added caching of hyperslab blocks, which improves performance _significantly_ for hyperslab I/O.
* [svn-r673] Changes since 19980908Robb Matzke1998-09-081-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
* [svn-r620] Changes since 19980825Robb Matzke1998-08-271-47/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5R.c [NEW] ./src/H5Rprivate.h [NEW] ./src/H5Rpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/ragged.c [NEW] Preliminary support for 2d ragged arrays for Mark Miller and Jim Reus. Not fully implemented yet. The test is not actually part of `make test' because we still have some memory problems. ./src/H5E.c ./src/H5Epublic.h Added H5E_RAGGED as a major error number. ./bin/release Checks the MANIFEST file against `svf ls' on systems that have it. ./bin/trace Fixed a bug that caused arguments of type `void *x[]' to not be handled. ./src/H5.c Removed unused variables and changed a couple types to fix compiler warnings. Added tracing support for ragged array object ID's and arrays of pointers. ./src/H5D.c H5Dcreate() will complain if either of the property lists are invalid (instead of using the default). ./src/H5D.c ./src/H5Dprivate.h Split H5Dget_space() into an API and internal function so it can be called from the new ragged array layer. ./src/H5Fistore.c Fixed warnings about unsigned vs. signed comparisons. ./src/H5Flow.c Fixed a warning about a variable being shadowed in the MPI-IO stuff. ./src/H5Iprivate.h ./src/H5Ipublic.h Added the H5_RAGGED atom group. ./src/H5Shyper.c Fixed some freeing-free-memory errors that resulted when certain arrays were freed but the pointers were left in the data structures. I simply set the pointers to null after they were freed. ./src/H5Sprivate.h ./src/H5Sselect.c Split the H5Sselect_hyperslab() function into an API and a private function so it could be called from the ragged array layer. Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to get rid or compiler warnings. ./src/H5Tconv.c Removed a misleading comment. ./test/bittests.c Fixed a warning about a printf(). ./test/cmpd_dset.c Fixed warnings about unused variables because of test #11 being commented out. ./bin/trace Shortened the right margin for the output to allow room for the `);' at the end of the TRACE() macros.
* [svn-r578] Changes since 19980805Robb Matzke1998-08-061-17/+30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Replaced Compression.html with Filters.html ./doc/html/Filters.html ./src/H5Ocomp.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5Z.c ./src/H5Zprivate.h Added two extra arguments to H5Pget_filter() in order to retrieve the filter name. The name is the name registered for the filter with H5Zregister(), but if the dataset creation property originally came from an existing file then the name is that which is stored in the file. ./tools/h5ls.c The `-v' option now prints the names of the filters. ./src/H5B.c ./src/H5Fistore.c ./src/H5O.c ./src/H5Oefl.c ./src/H5Oprivate.h ./src/H5P.c Plugged a memory leak. ./src/H5MMprivate.h H5MM_malloc(0) and H5MM_calloc(0) actually allocate a single byte in order to be sure that we get a valid pointer. ./src/H5S.c ./src/H5Sselect.c Fixed pointer->integer conversions in error return values in three places.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-99/+161
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
* [svn-r529] Changes since 19980722Robb Matzke1998-07-221-274/+276
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id. Added array tracing where the array rank is stored in a simple data space. Just use the name of the data space argument when declaring the array argument: herr_t H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op, const hssize_t start[/*space_id*/], const hsize_t _stride[/*space_id*/], const hsize_t count[/*space_id*/], const hsize_t _block[/*space_id*/]) and when the program runs you'll see array values printed: H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET, start=0xbfffef4c {0}, _stride=NULL, count=0xbfffef44 {64}, _block=NULL) = SUCCEED; Added more symbolic data types to the tracing output. ./src/H5A.c ./src/H5Apublic.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Fpublic.h ./src/H5G.c ./src/H5Gpublic.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Spublic.h ./src/H5Sselect.c ./src/H5Ssimp.c ./src/H5TB.c ./src/H5V.c Changed some API argument names to be more consistent with other API functions and to produce better tracing output. Reformatted some long lines. Indented printf statements. ./tools/h5ls.c Fixed warnings about unsigned vs. signed comparisons.
* [svn-r526] Changes since 19980721Robb Matzke1998-07-221-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5ls.c If the dataset is of type H5T_NATIVE_CHAR then we print the value as a string. This is temporary -- I plan to add better control of this later but needed something now for debugging. ./src/H5Fistore.c Squashed a bug in the chunk caching code that caused the wrong chunk to be returned. ./bin/trace ./src/H5.c Added support for printing values of array arguments when the size of the array is supplied by some previous argument. You must declare the argument as an array in order for the automatic tracing stuff to work. For instance, the third argument of H5Pset_chunk() is an array whose size is determined by the second argument `ndims'. Here's how you should declare it: herr_t H5Pset_chunk(hid_t plist_id, intn rank, hsize_t dims[/*rank*/]) The comment inside the `[]' is the name of some previous integer argument (int, unsigned, size_t, ssize_t, hsize_t, hssize_t). The trace output will look something like: H5Pset_chunk(plist=1234567, rank=2, dims=0x112233 {11, 22}) Changed tracing so that data types are printed out symbolically when possible. Changed tracing so data type initializations are not printed. This used to be confusing because lots of H5Tcopy() and H5Tregister...() calls showed up before the applications first explicit API call. ./src/H5Ipublic.h Changed the file atom group from zero to one so printing of atoms during tracing is more consistent -- they're all big numbers now. ./src/H5A.c ./src/H5E.c ./src/H5F.c ./src/H5G.c ./src/H5Sselect.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Accidently modified these when working on the tracing, but nothing should have changed. ./src/H5P.c Changed the definition of H5Pset_chunk() for tracing. ./src/H5S.c ./src/H5Spublic.h Changed the definitions of H5Sset_extent_simple() and H5Screate_simple() for tracing. Changed the FUNC_ENTER() name for H5Screate_simple() so tracing shows the correct name.
* [svn-r460] Changes since 19980707Robb Matzke1998-07-071-62/+105
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/trace ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5P.c ./src/H5Pprivate.h ./src/H5S.c ./src/H5T.c Output-only arguments have their addresses printed during tracing and added symbolic output for the H5F_driver_t arguments. That's another reason that we should be careful to add `/*out*/' after arguments that are output-only and `/*in,out*/' after arguments that are used for both input and output values. No internal function calls H5Pget_class() anymore. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h Added H5Tget_overflow() and H5Tset_overflow() so the application can query or set a function that will be called whenever an overflow occurs. Implemented as documented in previous e-mail except the overflow handler gets two buffers: one that contains the source value and one to receive the optional destination value. ./test/dtypes.c Tests overflow handler. ./src/H5.c We have to declare fdopen() because I'm getting errors when compiling on Irix64 even though we include <stdio.h> as documented in the fdopen() man page.
* [svn-r436] H5Pset_cache() did not save the value of rdcc_w0. Fixed it.Albert Cheng1998-06-261-5/+6
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* [svn-r435] ./INSTALLRobb Matzke1998-06-231-12/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./INSTALL_MAINT ./README ./RELEASE Partially updated for second alpha, but haven't updated version numbers yet. ./src/H5.c ./src/H5A.c ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5I.c ./src/H5MM.c ./src/H5MMprivate.h ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5S.c ./src/H5T.c ./src/H5Tconv.c ./src/H5detect.c ./test/hyperslab.c ./test/istore.c Changed memory allocation functions so they fail instead of dumping core. The `x' was removed from the name to remind us of that: H5MM_xmalloc() -> H5MM_malloc(), etc. H5MM_calloc() takes one argument like H5MM_malloc() instead of two like calloc() because we almost always called it with `1' for one of the arguments anyway. The only difference between the two functions is that H5MM_calloc() returns memory which is initialized to zero. ./src/H5Gent.c ./src/H5Gprivate.h Removed H5G_ent_calloc() since it wasn't used. ./src/H5Fistore.c Fixed a bug found by Albert. Thanks, Albert! This fix combined with the changes to memory allocation prevent the library from failing an assertion if the application uses an unreasonable size for chunks (like Alberts 10000x10000x4). ./src/H5MF.c ./src/H5MFprivate.h Changed H5MF_free() to H5MF_xfree() since calling it with an undefined address is allowed.
* [svn-r429] Changes since 19980616Robb Matzke1998-06-171-15/+58
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/tracing.html NEW This entire update is to make it possible for the library to print the name, arguments, and return value of every API call without requiring any extra work from developers or app programmers. This file describes how this all works. ./configure.in Added the `--enable-tracing' switch. If you use it then the library will include code to print API function names, argument names and values, and function return values. However, you must then turn on the tracing by setting the HDF5_TRACE environment variable to a file descriptor number. The default is `--disable-tracing' since enabling it causes a slight increase in library size and a slowdown resulting from an extra function call for each API function call (I couldn't even measure the slowdown :-) ./bin/trace NEW A perl script that synchronizes the H5TRACE() macro calls in the *.c files with the function return type and formal argument names and types. If you use GNU make and gcc then this will be done automatically, otherwise just invoke this script with the names of one or more .c files. You could do it by hand to, but encoding argument types is a little tricky at first. ./config/commence.in Added the $(TRACE) macro, which defaults to the no-op. Added -D_POSIX_SOURCE to the compiler command line. ./src/Makefile.in Override the default for $(TRACE). ./config/depend.in Automatically calls $(TRACE) to synchronize the H5TRACE() macros in any source file that changed. As with makefile dependencies, one way to force synchronization of all files is to remove the `.depend' file. ./MANIFEST Added new files. ./src/H5Eprivate.h Modified HRETURN_ERROR() and HRETURN() for tracing. ./src/H5.c ./src/H5private.h This is where the real tracing work really happens, in H5_trace(). ./src/H5A.c ./src/H5D.c ./src/H5G.c ./src/H5P.c ./src/H5S.c ./src/H5Z.c Added H5TRACE() calls to all API functions. You don't really need these changes if you don't want to merge your stuff because they can be generated automatically by going to the hdf5/src directory and saying ../bin/trace *.c ./src/H5T.c Added H5TRACE() calls. Other stuff below. ./src/H5E.c ./src/H5Epublic.h Added H5TRACE() calls. Created a type H5E_auto_t for the `func' argument of H5Eset_auto() and H5Eget_auto() to make those arguments easier to parse for tracing. It should also make it clearer for users that don't know how to read complicated ANSI data types. ./src/H5F.c Added H5TRACE() calls. Changed a couple `uintn' argument types in API functions to `unsigned int' since `uintn' part of the API. Changed a few "can't" and "cant" error messages to "unable to". ./src/H5Ipublic.h Removed H5_DIRECTORY from the H5I_group_t enum. It wasn't used anywhere. ./src/H5Tconv.c Removed an unused label. ./src/H5Fistore.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5T.c ./test/dsets.c ./test/dtypes.c Fixed a warning about a variable possibly used before it's initialized. Added __unused__ to turn off some unused argument warnings that pop up when debugging is turned off and optimizations are turned on.
* [svn-r418] ./html/Files.htmlRobb Matzke1998-06-101-2/+96
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/H5F.c ./src/HFcore.c ./src/H5Ffamily.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5MF.c ./src/H5P.c ./src/H5Ppublic.h Added H5Pset_alignment() so that it is now possible to align file allocation requests on application-specified boundaries. Any request >= the specified threshold will begin on an address which is a multiple of the specified alignment. Defaults are one for threshold and alignment. The alignment is done on relative addresses, so the size of the user block can affect the location of the data in the file. ./src/H5D.c ./src/dsets.c Added a test for, and fixed the data space caching bug in datasets. Extending a dataset through one handle will cause all other handles to the same dataset to get the new dataset size. ./src/H5S.c ./src/H5Sprivate.h Removed an unused argument from H5S_read() which duplicated information from the other argument. ./config/linux Made `--enable-parallel' the default on my system. It used to be that way before but then I accidently turned it off and forgot about it. ./src/H5Fmpio.c Qualified some function arguments with __unused__. Changed a couple places where NULL was returned on error for herr_t functions. ./src/H5P.c Removed unused autos from H5Pset_mpi().
* [svn-r411] Added data-transfer-mode to various function to specify whichAlbert Cheng1998-06-071-1/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | mode to use for data transfer. Currently, INDEPENDENT transfer is the default mode. Collective is supported for files opened via the MPIO driver. Specific changes to individual files follow. H5D.c: Replaced previous kludge of passing xfer_mode via the file access_mode with xfer_mode function parameter all the way to the low level I/O drivers. H5Dprivate.h: The H5D_xfer_t.xfer_mode is now used in serial and parallel modes. Removed the "HAVE_PARALLEL" macro condition to support it. H5Dpublic.h: Added H5D_XFER_DFLT as a new value for H5D_transfer_t and removed the HAVE_PARALLEL condition macro to make the H5D_transfer_t definition available to both serial and parallel version. H5B.c: H5F.c: H5Farray.c: H5Fcore.c: H5Ffamily.c: H5Fistore.c: H5Flow.c: H5Fmpio.c: H5Fsec2.c: H5Fsplit.c: H5Fstdio.c: H5Gnode.c: H5HG.c: H5HL.c: H5O.c: H5Sprivate.h: H5Ssimp.c: debug.c: Added xfer_mode to the argument lists of the following routines to specify data transfer mode. Then updated calls to these routines with appropriate transfer mode. Whenever cases that collective mode is inappropriate (e.g. object header read-write, flush), H5D_XFER_DFLT is used. The H5D_XFER_DFLT mode is currently acting the same as the independent mode. H5F_block_read H5F_block_write H5F_arr_read H5F_arr_write H5F_core_read H5F_core_write H5F_fam_read H5F_fam_write H5F_mpio_read H5F_mpio_write H5F_low_write H5F_low_read H5F_sec2_read H5F_sec2_write H5F_split_read H5F_split_write H5F_stdio_read H5F_stdio_write H5S_simp_fgath H5S_simp_fscat H5S_simp_read H5S_simp_write H5Fprivate.h: H5P.c: Removed access_mode field from struct H5F_access_t type. The access-mode was the initial design to control independent or collective I/O mode. It is now supported by the data transfer mode.
* [svn-r400] Changes since 19980513Robb Matzke1998-05-221-92/+200
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Datasets.html Fixed a couple of typos. ./src/H5.c Added the `Z' modifier to HDfprintf() for `size_t' sizes. Use it like this: HDfprintf(stderr,"size is %Zd\n", (size_t)x); ./src/H5AC.c ./src/H5F.c ./src/H5Fprivate.h The maximum number of meta data objects that can be cached can be set from the application (but the library might not honor it every time; it's a hint). ./src/H5D.c Changed a warning message so it's not so alarming. ./src/H5Fistore.c Chunks can be cached. ./src/H5O.c ./src/H5Oprivate.h Added H5O_copy() and H5O_free() to copy and free messages. ./src/H5P.c ./src/H5Ppublic.h Added H5Pset_cache() and H5Pget_cache() and changed lots of "template" to "property list". ./src/H5Z.c ./src/H5Zpublic.h Miscellaneous little things to clean up. Mostly just removed H5Z_MAXVAL and added H5Z_USERDEF_MIN and H5Z_USERDEF_MAX. ./MANIFEST ./test/Makefile.in ./test/chunk.c [NEW] Added a performance test for chunk caching. It looks at the amount of I/O instead of timing because timing is partly dependent on the chunk size and I wanted a measurement that was a function of only the cache size. Run `chunk' with no arguments and then say `gnuplot x-gnuplot' to see the plots (press return between plots). Postscript files are created for each plot. ./test/big.c ./test/cmpd_dset.c ./test/extend.c ./test/external.c ./test/gheap.c Added H5F_ACC_DEBUG so we can see cache performance statistics.
* [svn-r398] Changes since 19980501Robb Matzke1998-05-131-8/+40
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Bprivate.h ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fprivate.h ./src/H5Gpkg.h ./src/H5MF.c ./src/H5P.c ./src/H5Ppublic.h ./test/big.c ./html/Big.html ./html/Files.html Family members can now be any size >1kB. Got rid of some places where we were reading a property list after it was closed. ./MANIFEST ./src/Makefile.in ./src/h5repart.c A program to repartition file families. The source and/or destination may be files or file families. Examples: testhdf5 -c -o stab h5repart -m 1m tstab2.h5 x%05d.h5 h5repart -m 100k x%05d.h5 y%05d.h5 h5repart y%05d.h5 z.h5 diff tstab2.h5 z.h5 ./src/h5ls.c Added a usage message, replaced assertions with error messages. ./config/linux Made a warning message more obvious. Added better optimization flags for Pentium-Pro's.
* [svn-r377] Changes since 19980424Robb Matzke1998-04-281-21/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5A.c ./src/H5T.c Fixed memory leaks. More to come later but PureAtria doesn't make a Linux version of purify and the free version doesn't compile with the new SMP Linux kernels so I had to debug over the internet on a day that Sprint seemed to be having routing problems... oh well. I got rid of most of the leaks. ./src/H5Apublic.h Includes H5Ipublic.h for types in the header file. ./src/H5O.c Comments improved for H5O_read() ./test/tattr.c Removed a non-ANSI empty initializer. ./test/dsets.c Include <string.h> ./test/istore.c Fixed a non-ANSI pointer conversion.
* [svn-r369] Changed comments in H5Pset_mpi to reflect removal of access_mode ↵Robert Kim Yates1998-04-241-8/+1
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* [svn-r355] Changes since 19980417Robb Matzke1998-04-211-4/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This checkin completes the compression stuff almost two weeks ahead of schedule. It should now all be working and documented. ./Makefile.in ./config/commence.in A distclean causes the distribution makefile to be copied to Makefile again. ./src/H5D.c Opening a compressed dataset now works properly. ./src/H5P.c ./src/H5Ppublic.h The H5Pset_compression() and H5Pget_compression() now work as documented. ./src/H5T.c Fixed a bug that causes the library to crash sometimes if debugging is turned on for the `t' package. ./src/H5Z.c Fixed a bug where the number of bytes attributed to compression overruns was too low in the debugging output. ./test/dsets.c More compression tests: reading of uninitialized data, opening an existing dataset and reading it, partial I/O which isn't aligned on chunk boundaries, and use of application-defined compression methods. ./MANIFEST Removed ./test/dspace.c.
* [svn-r353] Changes since 19980414Robb Matzke1998-04-171-1/+172
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Compression.html [NEW] ./html/Datasets.html ./html/H5.format.html ./html/H5.user.html Documented compression. A couple of the H5P functions aren't quite implemented yet but they're coming soon... ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocomp.c [NEW] ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c [NEW] ./src/H5Zprivate.h [NEW] ./src/H5Zpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/dsets.c ./test/istore.c Compression is now mostly working. Don't try to open a compressed dataset though because the compression message won't be read. ./html/Datatypes.html ./html/H5.api.html ./src/H5.c ./src/H5private.h ./src/H5D.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Added timing support. When compiled with H5T_DEBUG defined the library will print conversion bandwidths when the library closes. The H5Tregister functions take a string as the first argument so the statistics output is meaningful. ./MANIFEST Added new files. ./configure.in ./src/H5config.h.in Check for getrusage(). Check for compress2() in libz.a and the zlib.h header file. Added `z' to the debug list. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c ./src/debug.c Cleaned up some indentation and added support to print istore B-trees. From the debugger, give the B-tree address and the dimensionality from the layout message of the object header. ./src/h5ls.c The oid is printed as w:x:y:z where w and x are the file ID and y and z are the OID within the file. You can give z or y*2^32+z as an argument to the debugger to print the object header for the object. ./src/H5AC.c Cleaned up statistics and made them match those reported by H5T and H5Z. ./src/H5MM.c ./src/H5MMprivate.h ./src/H5Fistore.c Finally got rid of a couple of long-standing const cast warnings.
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