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* Clang-format of source filesAllen Byrne2020-09-301-966/+1057
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* Switch H5VM inline routines back to single underscope and put a comment in ↵Quincey Koziol2020-08-061-10/+10
| | | | their header about this naming
* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-70/+10
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Minor changes from normalization with 1.10Dana Robinson2020-07-091-10/+10
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* Trim trailing whitespaceQuincey Koziol2020-04-201-10/+10
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* Reduce differences between my -Werror branch and `develop`:David Young2020-01-291-31/+31
| | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Fix issues with using H5Pget_fill_value() with file datatypes retrievedNeil Fortner2019-11-271-4/+4
| | | | from H5VLget_file_type().
* Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-301-2/+2
| | | | with tests and minor cleanups and refactorings.
* A few minor cleanupsQuincey Koziol2019-04-251-3/+0
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* Refactor dataset creation parameters out of the dataset creation propertyQuincey Koziol2019-04-251-15/+0
| | | | list and pass them as regular function parameters.
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-13/+13
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* Specify variable type.Jacob Smith2018-12-281-1/+1
| | | | Remove unnecessary whitespace.
* Formatting adjustmentsJacob Smith2018-12-181-7/+7
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* formatting adjustmentsJacob Smith2018-12-141-18/+4
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* Reformat to be more consistent with existing code.Jacob Smith2018-12-131-20/+12
| | | | Fix a few typos.
* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-25/+41
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| * VOL FEATUREDana Robinson2018-10-101-0/+18
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| * Normalization with vol_integration (property lists, file drivers,Dana Robinson2018-09-211-24/+22
| | | | | | | | other misc).
* | Stash work on object header reduction code and tests.Jacob Smith2018-09-111-0/+126
|/ | | | CMake stuff is not verified.
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-2/+2
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-31/+10
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-9/+9
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-14/+12
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Cleanup API context function usage.Quincey Koziol2018-03-191-14/+0
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| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-1/+1
| | |\ | | | | | | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| | | * Fix for HDFFV-10355 (CVE-2017-17506).Dana Robinson2018-02-271-1/+1
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| | * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-7/+21
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| | * Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-091-245/+164
| | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
| | * * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-071-164/+245
| | | | | | | | | | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
| | * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
| * | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-2/+2
| |/ | | | | | | improvements.
* | Re-factor coding for H5P/Sencode with libver bounds.Vailin Choi2018-03-121-4/+24
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* | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-1/+1
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* | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-10/+11
| | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-071-1/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
* [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
* [svn-r29614] Description:Quincey Koziol2016-04-031-13/+0
| | | | | | | | | Bring updated code for setting chunk size information from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29612] Description:Quincey Koziol2016-04-031-14/+0
| | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29607] Description:Quincey Koziol2016-04-021-1/+122
| | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-3/+3
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r29009] Corrected the API descriptions for H5Pget_virtual_dsetname and ↵Scot Breitenfeld2016-01-281-7/+7
| | | | H5Pget_virtual_filename.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-3/+3
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r28797] Description:Quincey Koziol2016-01-051-2/+2
| | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28723] Description:Quincey Koziol2015-12-221-12/+26
| | | | | | | | | Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-1/+0
| | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28606] Description:Quincey Koziol2015-12-131-10/+16
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27956] Description:Quincey Koziol2015-10-051-3/+2
| | | | | | | | Minor code cleanups, preparing to merge to trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27885] Description:Quincey Koziol2015-09-271-4/+8
| | | | | | | | Check if the layout has been retrieved before setting it again. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
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