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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Fixes codespell issues (#2032)Dana Robinson2022-08-171-1/+1
| | | | | * Fixes codespell issues * Fixed another typo
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-17/+17
| | | | | * Update format source to clang 13 * More format changes
* Removes workaround for platforms that lack C99 stuct initializers (#1842)Dana Robinson2022-07-011-133/+0
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* Documents Windows badness in H5Pget_external() (#1821)Dana Robinson2022-06-241-1/+10
| | | | | * Documents Windows badness in H5Pget_external() * Added a cast for off_t
* Removes the STATIC flavor of FUNC_ENTER macros (#1622)Dana Robinson2022-04-081-26/+26
| | | | | * Removes the STATIC flavor of FUNC_ENTER macros
* Update clang config (#473)Quincey Koziol2021-03-171-4/+16
| | | | | | | * Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed uninitialized warnings (#360)Sean McBride2021-02-191-1/+1
| | | | | | | | | | * Fixed all -Wsometimes-uninitialized warnings by initializing variables * Fixed all -Wconditional-uninitialized warnings by initializing variables * Commit alignment changes from running bin/format_source with clang version 10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* develop revert source to clang-format version 11 (#293)Allen Byrne2021-01-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction
* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-30/+30
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* Enhance API tracing (#120)Quincey Koziol2020-11-261-4/+4
| | | Enhance API tracing to handle more types, and to put tracing info in a string, allowing it to be used when reporting errors. Also refactor ref-counted strings (H5RS) module to add capabilities needed for the tracing. Refactored H5Gname.c routines to use new H5RS routines also. Added /*out*/ tags to API routines that are returning information to the application. Updated H5TRACE macros from running updated trace script over library code. Added tests for new H5RS routines.
* Basic alignment with async branch (#115)Quincey Koziol2020-11-231-1/+1
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Clang-format of source filesAllen Byrne2020-09-301-966/+1057
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* Switch H5VM inline routines back to single underscope and put a comment in ↵Quincey Koziol2020-08-061-10/+10
| | | | their header about this naming
* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-70/+10
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Minor changes from normalization with 1.10Dana Robinson2020-07-091-10/+10
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* Trim trailing whitespaceQuincey Koziol2020-04-201-10/+10
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* Reduce differences between my -Werror branch and `develop`:David Young2020-01-291-31/+31
| | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* Fix issues with using H5Pget_fill_value() with file datatypes retrievedNeil Fortner2019-11-271-4/+4
| | | | from H5VLget_file_type().
* Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, alongQuincey Koziol2019-07-301-2/+2
| | | | with tests and minor cleanups and refactorings.
* A few minor cleanupsQuincey Koziol2019-04-251-3/+0
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* Refactor dataset creation parameters out of the dataset creation propertyQuincey Koziol2019-04-251-15/+0
| | | | list and pass them as regular function parameters.
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-13/+13
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* Specify variable type.Jacob Smith2018-12-281-1/+1
| | | | Remove unnecessary whitespace.
* Formatting adjustmentsJacob Smith2018-12-181-7/+7
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* formatting adjustmentsJacob Smith2018-12-141-18/+4
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* Reformat to be more consistent with existing code.Jacob Smith2018-12-131-20/+12
| | | | Fix a few typos.
* Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-25/+41
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| * VOL FEATUREDana Robinson2018-10-101-0/+18
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| * Normalization with vol_integration (property lists, file drivers,Dana Robinson2018-09-211-24/+22
| | | | | | | | other misc).
* | Stash work on object header reduction code and tests.Jacob Smith2018-09-111-0/+126
|/ | | | CMake stuff is not verified.
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-2/+2
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-31/+10
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-9/+9
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-14/+12
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Cleanup API context function usage.Quincey Koziol2018-03-191-14/+0
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| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-1/+1
| | |\ | | | | | | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| | | * Fix for HDFFV-10355 (CVE-2017-17506).Dana Robinson2018-02-271-1/+1
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| | * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-7/+21
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| | * Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-091-245/+164
| | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
| | * * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-071-164/+245
| | | | | | | | | | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
| | * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
| * | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-2/+2
| |/ | | | | | | improvements.
* | Re-factor coding for H5P/Sencode with libver bounds.Vailin Choi2018-03-121-4/+24
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* | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-1/+1
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* | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-10/+11
| | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-071-1/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
* [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
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