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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-38/+146
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| * [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-071-1/+1
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
| * [svn-r29644] Description:Quincey Koziol2016-04-061-1/+1
| | | | | | | | | | | | | | | | Finish correcting initializer for chunked layouts. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (to minor to require h5committest)
| * [svn-r29640] Description:Quincey Koziol2016-04-051-1/+1
| | | | | | | | | | | | | | | | Add missing inializer from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial (Too minor to require h5committest)
| * [svn-r29614] Description:Quincey Koziol2016-04-031-13/+0
| | | | | | | | | | | | | | | | | | Bring updated code for setting chunk size information from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29612] Description:Quincey Koziol2016-04-031-14/+0
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29607] Description:Quincey Koziol2016-04-021-1/+122
| | | | | | | | | | | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-3/+3
| | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29009] Corrected the API descriptions for H5Pget_virtual_dsetname and ↵Scot Breitenfeld2016-01-281-7/+7
| | | | | | | | H5Pget_virtual_filename.
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-3/+3
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28797] Description:Quincey Koziol2016-01-051-2/+2
| | | | | | | | | | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28723] Description:Quincey Koziol2015-12-221-12/+26
| | | | | | | | | | | | | | | | | | Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-11/+16
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-1/+0
| | | | | | | | | | | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
| * [svn-r28606] Description:Quincey Koziol2015-12-131-10/+16
| | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-17/+761
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| * [svn-r27956] Description:Quincey Koziol2015-10-051-3/+2
| | | | | | | | | | | | | | | | Minor code cleanups, preparing to merge to trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27885] Description:Quincey Koziol2015-09-271-4/+8
| | | | | | | | | | | | | | | | Check if the layout has been retrieved before setting it again. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27876] Description:Quincey Koziol2015-09-251-1/+2
| | | | | | | | | | | | | | | | | | Make virtual layout return to the property list occur in all cases, even on failure. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not needed on this branch)
| * [svn-r27835] Description:Quincey Koziol2015-09-211-339/+642
| |\ | | | | | | | | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r27598] Description:Quincey Koziol2015-08-271-2/+1
| | | | | | | | | | | | Check in misc. minor code cleanups, found during code review
| * | [svn-r27547] Fill in public function descriptions from RM entries.Neil Fortner2015-08-211-11/+59
| | | | | | | | | | | | Tested: ummon
| * | [svn-r27538] Add tests to cover remaining code coverage assertions in src ↵Neil Fortner2015-08-201-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | directory except for those in H5Doh.c and H5Shyper.c. Tested: ummon
| * | [svn-r27506] H5Dset_extent no longer holds all printf source datasets open.Neil Fortner2015-08-141-4/+6
| | | | | | | | | | | | | | | | | | Other items identified during reviews. Tested: ummon
| * | [svn-r27501] Add mapping validity checking to VDS open.Neil Fortner2015-08-121-76/+6
| | | | | | | | | | | | | | | | | | Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27479] Add checking for invalid inputs to H5Dset_virtual: point ↵Neil Fortner2015-08-071-15/+113
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | selections, incorrect numbers of elements selected, incorrect "slice" through limited dimensions, incorrect number of printf substitutions. Patch source selection space extent with bounds of selection if extent is unknown before returning via H5Pget_virtual_srcspace. Write updated VDS dataspace to file when it changes due to unlimited selections. Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27450] Add descriptions for all non-public functions.Neil Fortner2015-07-311-3/+9
| | | | | | | | | | | | | | | | | | | | | Other comments. Add some input checking. Tested: ummon
| * | [svn-r27425] Implement support for H5Pequal with VDS properties.Neil Fortner2015-07-221-1/+42
| | | | | | | | | | | | | | | | | | Testing for H5Pequal with VDS. Tested: ummon
| * | [svn-r27424] Implement support for h5debug for VDS.Neil Fortner2015-07-221-13/+173
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Implement support for H5Pencode/decode with VDS properties. Testing for H5Pencode/decode with VDS. Relax assertion check for number of elements written to buffer as we do not check for overlaps in mappings. Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27398] Fixed potential issue layouts with compilers that do not ↵Neil Fortner2015-07-151-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | support designated initializers. Tested: ummon
| * | [svn-r27284] Modify VDS implementation to always use FAPL and DAPL from VDS ↵Neil Fortner2015-06-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | file and dataset to open source files and datasets, instead of using the default property lists. Modify VDS to reject attempts at parallel I/O, fix parallel compile error. Modify VDS to not write fill value to memory buffer if the fill value is undefined. Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27246] Remove "clipped" status from unlimited selections, decoupling ↵Neil Fortner2015-06-181-10/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | them from the extent. Improve algorithm for calculation of VDS extent by removing the need for a temporary copy of a dataspace. Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27215] Fix issue where % characters could not be used in non-printf ↵Neil Fortner2015-06-161-15/+25
| | | | | | | | | | | | | | | | | | | | | | | | mappings. Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27214] Fixed a bug on Windows where dcpls were set to be chunked and ↵Dana Robinson2015-06-161-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | not virtual. This was due to a simple copy-paste issue in the initializer that is used when C99 initializers are not available. Also fixed a dims array size error in the vds test. Tested on: 64-bit Win7 with VS2013
| * | [svn-r27192] Improve support for printf selections (support partial blocks withNeil Fortner2015-06-121-1/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5_VDS_FIRST_MISSING) Add test for this Rework VDS code to not depend on unlimited selections having a "clipped" state in preparation for removing the clipped state from unlimited selections. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
| * | [svn-r27191] Merged r26781 to r27185 from trunkDana Robinson2015-06-111-7/+10
| |\ \ | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2 (C++ and Fortran 2003 also tested)
| * | | [svn-r27145] Add some testing for printf-style source dataset name resolution.Neil Fortner2015-06-031-16/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Various bug fixes, including a temporary fix for printf with FIRST_MISSING view. Other cleanup. Tested: ummon
| * | | [svn-r27104] Add support for printf-style source dataset name resolution.Neil Fortner2015-05-221-45/+79
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Passes use case test, no regression tests yet. Add functions H5Pset/get_virtual_printf_gap (not tested yet). Other minor fixes/cleanup. Tested: ummon
| * | | [svn-r27049] Rename H5Pset/get_virtual_dataspace_bounds to ↵Neil Fortner2015-05-111-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5Pset/get_virtual_view and rename enum argument. Add support for AND and NOTA/NOTB operations with unlimited selections. Add some tests for unlimited selections. Other minor fixes/cleanup. Note: "clipped" status of unlimited selections is not properly updated with H5Sselect_copy. This is a deliberate omission since fixing it would take work and we are planning to eliminate the clipped status anyways. Tested: ummon
| * | | [svn-r26967] Refactor VDS unlimited dimension code to correctly handle case ↵Neil Fortner2015-04-291-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | where selections have discrete blocks and the extent is set by the minimum (untested, and there is still no way to set that preference). Tested: ummon
| * | | [svn-r26962] Add support for unlimited selections to VDS code.Neil Fortner2015-04-291-3/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Not tested (except for percival-unlim example) Fix percival-unlim example Other bug fixes/cleanup Tested: Fedora 64
| * | | [svn-r26828] Implement support for unlimited selections (not supported by ↵Neil Fortner2015-04-161-1/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | VDS code yet). Add tests for unlimited selections. Various other minor changes. Tested: ummon
| * | | [svn-r26476] Add support for I/O in all cases with fixed size datasets and ↵Neil Fortner2015-03-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | no point selections. Add source dataspace extent patching (should allow closing the source file). Note fill values and various other features are not yet supported. Note there are still some code coverage assertions in the selection matching algorithm - if you hit these try taking them out. Note make check still fails in h5dump test (unrelated to this checkin). Tested: ummon
| * | | [svn-r26469] INCOMPLETE, UNWORKING CODENeil Fortner2015-03-171-2/+5
| | | | | | | | | | | | | | | | Commit progress through 3/17/15
| * | | [svn-r26411] Add support for I/O in very simple cases (virtual mapping and ↵Neil Fortner2015-03-091-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | file space are both H5S_ALL). Note make check fails in h5dump test (unrelated to this checkin). Tested: ummon
| * | | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-241-1/+1
| |\ \ \ | | | | | | | | | | | | | | | Tested: ummon
| * | | | [svn-r26261] Commit working but incomplete prototype. Does not perform I/O.Neil Fortner2015-02-201-66/+47
| | | | | | | | | | | | | | | | | | | | Tested: ummon
| * | | | [svn-r26198] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-171-16/+404
| | | | | | | | | | | | | | | | | | | | Commit progress through 1610 CST 2/17/15
| * | | | [svn-r26153] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-101-2/+119
| | | | | | | | | | | | | | | | | | | | Commit progress through 2/10/15 at 1500 CST
* | | | | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-051-179/+585
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
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