| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
| |
Bring updated code for setting chunk size information from revise_chunks
branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
| |
Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
| |
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
(h5committest forthcoming)
|
|
|
|
|
|
|
|
| |
metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library
tested on bb-8 with parallel and serial.
|
|
|
|
| |
H5Pget_virtual_filename.
|
|
|
|
|
|
|
|
|
|
| |
checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
|
|
|
|
|
|
|
|
| |
Clean up another round of memory allocation mis-matches.
Tested on:
Linux/32 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
|
|
|
|
|
|
|
|
|
| |
Bring over rest of performance improvements for extending chunked datasets
and normalize against revise_chunks branch.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel)
(h5committest forthcoming)
|
|
|
|
|
|
|
|
|
| |
Also purged obsolete /*ARGSUSED*/ from the library.
Tested on:
Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only
(these changes have been in revise_chunks for a long time)
|
|
|
|
|
|
|
|
|
|
| |
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
|
|
|
|
|
|
|
| |
Minor code cleanups, preparing to merge to trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
|
|
|
|
|
|
|
| |
Check if the layout has been retrieved before setting it again.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
|
|
|
|
|
|
|
|
| |
Make virtual layout return to the property list occur in all cases, even
on failure.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not needed on this branch)
|
|\
| |
| |
| |
| |
| |
| |
| | |
Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.
Tested: jam, koala, ostrich (h5committest), ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Align w/vds branch: Whitespace cleanup, move common code for opening a
dataset into a new routine, misc. style cleanups.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest upcoming)
|
| |
| |
| |
| | |
Check in misc. minor code cleanups, found during code review
|
| |
| |
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
directory except
for those in H5Doh.c and H5Shyper.c.
Tested: ummon
|
| |
| |
| |
| |
| |
| | |
Other items identified during reviews.
Tested: ummon
|
| |
| |
| |
| |
| |
| | |
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
selections, incorrect
numbers of elements selected, incorrect "slice" through limited dimensions,
incorrect number of printf substitutions.
Patch source selection space extent with bounds of selection if extent is
unknown before returning via H5Pget_virtual_srcspace.
Write updated VDS dataspace to file when it changes due to unlimited selections.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| | |
Other comments.
Add some input checking.
Tested: ummon
|
| |
| |
| |
| |
| |
| | |
Testing for H5Pequal with VDS.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Implement support for H5Pencode/decode with VDS properties.
Testing for H5Pencode/decode with VDS.
Relax assertion check for number of elements written to buffer as we do not
check for overlaps in mappings.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
support designated
initializers.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
file and dataset
to open source files and datasets, instead of using the default property lists.
Modify VDS to reject attempts at parallel I/O, fix parallel compile error.
Modify VDS to not write fill value to memory buffer if the fill value is
undefined.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
them from the
extent.
Improve algorithm for calculation of VDS extent by removing the need for a
temporary copy of a dataspace.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
mappings.
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
not virtual. This was due to a simple copy-paste issue in the initializer that is used when C99 initializers are not available.
Also fixed a dims array size error in the vds test.
Tested on: 64-bit Win7 with VS2013
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5_VDS_FIRST_MISSING)
Add test for this
Rework VDS code to not depend on unlimited selections having a "clipped" state
in preparation for removing the clipped state from unlimited selections.
Other bug fixes/cleanup
Tested: Kubuntu 64 (home computer)
|
|\ \
| |/
| |
| |
| | |
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
(C++ and Fortran 2003 also tested)
|
| |
| |
| |
| |
| |
| |
| |
| | |
* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
|
| |
| |
| |
| |
| |
| |
| | |
Various bug fixes, including a temporary fix for printf with FIRST_MISSING view.
Other cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Passes use case test, no regression tests yet.
Add functions H5Pset/get_virtual_printf_gap (not tested yet).
Other minor fixes/cleanup.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
H5Pset/get_virtual_view and rename
enum argument.
Add support for AND and NOTA/NOTB operations with unlimited selections.
Add some tests for unlimited selections.
Other minor fixes/cleanup.
Note: "clipped" status of unlimited selections is not properly updated with
H5Sselect_copy. This is a deliberate omission since fixing it would take work
and we are planning to eliminate the clipped status anyways.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
where selections
have discrete blocks and the extent is set by the minimum (untested, and there
is still no way to set that preference).
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| | |
Not tested (except for percival-unlim example)
Fix percival-unlim example
Other bug fixes/cleanup
Tested: Fedora 64
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
VDS code yet).
Add tests for unlimited selections.
Various other minor changes.
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| | |
no point
selections.
Add source dataspace extent patching (should allow closing the source file).
Note fill values and various other features are not yet supported.
Note there are still some code coverage assertions in the selection matching
algorithm - if you hit these try taking them out.
Note make check still fails in h5dump test (unrelated to this checkin).
Tested: ummon
|
| |
| |
| |
| | |
Commit progress through 3/17/15
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
file space are
both H5S_ALL).
Note make check fails in h5dump test (unrelated to this checkin).
Tested: ummon
|
|\ \
| |/
| |
| | |
Tested: ummon
|
| |
| |
| |
| |
| |
| |
| |
| |
| | |
Switch from enum H5D_CHUNK_BTREE to H5D_CHUNK_IDX_BTREE, along with a couple
of minor whitespace touchups.
Tested on:
Mac OSX/64 10.10.2 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial
|
| |
| |
| |
| | |
Tested: ummon
|
| |
| |
| |
| | |
Commit progress through 1610 CST 2/17/15
|
|/
|
|
| |
Commit progress through 2/10/15 at 1500 CST
|
|
|
|
|
|
|
|
|
| |
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
(h5committest forthcoming)
|