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* [svn-r24769] Description:Quincey Koziol2014-03-071-4/+5
| | | | | | | | | Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (h5committest forthcoming)
* [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward ↵Mohamad Chaarawi2014-02-131-2/+2
| | | | | | | | | | | | project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change. Tested Manually on Jam and Ostrich. Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes. error on Koala: error while loading shared libraries: libirng.so
* [svn-r23075] I revised the code and test according to Quincey's review. I ↵Raymond Lu2012-12-041-2/+6
| | | | | | also added more test cases. Tested on koala.
* [svn-r23017] I added a prototype function H5DOwrite_chunk in HL library for ↵Raymond Lu2012-11-071-1/+33
| | | | | | | | | Dectris people to test performance. The library's API function H5PSIdirect_write is still in. I reorganized the internal library by adding H5D__pre_write function. Tested on koala.
* [svn-r22987] ported revisions from 22742 to 22986 from the trunkRaymond Lu2012-10-291-62/+744
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* [svn-r22735] Purpose:Jonathan Kim2012-09-041-0/+51
| | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22707] Description:Quincey Koziol2012-08-221-7/+66
| | | | | | | | | | Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22697] Snapshot version 1.9 release 126HDF Tester2012-08-191-1/+2
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* [svn-r22681] Description:Quincey Koziol2012-08-151-338/+136
| | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22627] Description:Quincey Koziol2012-08-031-17/+18
| | | | | | | | | Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22377] make the file and memory MPI datatypes as default properties in theMohamad Chaarawi2012-05-181-1/+19
| | | | | | | DXPL so that we don't have to insert and remove them everytime we perform collective I/O. Test with h5committest
* [svn-r21919] Description:Quincey Koziol2012-02-091-27/+27
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21529] Description:Quincey Koziol2011-10-121-3/+3
| | | | | | | | Update tracing information with new types introduced in "actual I/O mode" query routines. Tested on: bin/reconfigure on jam
* [svn-r21508] Revoked svn check-ins 20913 and 20921 (fix for HDFFV-7579) ↵Dana Robinson2011-10-101-85/+0
| | | | pending a careful evaluation of enum conversion behavior.
* [svn-r21442] Description:Quincey Koziol2011-10-011-6/+93
| | | | | | | | | | | | | | | | | | | | | | Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch after it bakes over the weekend. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r20922] Snapshot version 1.9 release 82HDF Tester2011-05-291-0/+2
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* [svn-r20913] Issue 7579 - The overflowing ENUM values are inconsistent. ↵Raymond Lu2011-05-271-0/+83
| | | | | | | | | | When no conversion is involved in reading or writing the data, overflowing values are retained. When conversion happens, the values become -1. The conversion function puts -1 when overflow happens. I added two new dataset transfer property to control whether to fill 0xff in the destination data or convert to the destination data when overflow happens. The two new functions are H5Pset(get)_enum_conv_overflow. I also added test cases in enum.c and dtypes.c. Tested on jam, koala, and heiwa.
* [svn-r19005] Purpose:Mike McGreevy2010-06-151-0/+6
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r18346] Description:Quincey Koziol2010-02-271-21/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity fixes back from branch to trunk: r18336: Fix coverity issues 275, 276, 277, 323, 432, 433, and 434 r18337: Fix Coverity issue #106: release free space section node on error r18338: Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an error after it's created. r18339: Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error in this function. r18340: Correct error in r18337 that wasn't releasing indirect fractal heap block early enough. r18341: Close nodes if any failed in the middle of allocating new nodes. Coverity 140 and 141 r18342: Correct [another] problem w/r18337. r18343: Fix coverity items 185, 20, and 21. r18344: Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was dereferenced without NULL checking (We believe). r18345: Fix Coverity issue # 210; removed NULL check after pointer dereferenced in H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation fault. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17611] Bug fix (ID 1628):Albert Cheng2009-10-081-1/+1
| | | | | | | | | There was a typo in the H5Pget_preserve that it was returning the wrong value. Fixed. Also added a test in test/cmpd_dset.c to verify the correctness of H5Pset_preserve and H5Pget_preserve. Tested: h5committest plus jam serial.
* [svn-r15628] Description:Quincey Koziol2008-09-161-1/+1
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15510] Description:Quincey Koziol2008-08-211-4/+4
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-301-6/+0
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-301-0/+6
| | | | New fortran wrappers added.
* [svn-r14860] Description:Quincey Koziol2008-04-241-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Omnibus raw data I/O revisions, with wide-ranging changes and refactoring, in order to prepare for implementing "fast append" feature. These changes remove the majority of the code duplication for raw data I/O which has crept in over the last ten years and introduces a more object- oriented design for operating on different types of dataset storage. Chunked storage no longer has it's own I/O routines, it is now handled as either contiguous (if chunk is not pulled into the cache) or compact (if the chunk is cached in memory). No bug or feature changes, at least intentionally... :-) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r13475] There's a configure issue linking szip's shared libraries when ↵Mike McGreevy2007-03-081-6/+7
| | | | | | | | | | | | running on kagiso. The static szip libraries are working as intended, but when shared szip libraries are present and intended for use they cannot be opened. A check has been implemented to test if shared szip libraries are functional on current platform. If they are not, and the user is trying to use them, szip is now disbaled and the user is informed. This issue occurs on kagiso, and the resolution was tested on kagiso.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-181-17/+17
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r12940] Description:Quincey Koziol2006-11-171-2/+4
| | | | | | | Add some more types to tracing script and regenerate TRACE macros, etc. Tested on: Linux/32 2.4 (heping)
* [svn-r12879] Purpose: Bug fixLeon Arber2006-11-081-0/+4
| | | | | | | Description: Fix a few memory-related bugs in the data transform code. Tested: kagiso (for real this time) w/ valgrind 3.2.1
* [svn-r12848] Description:Quincey Koziol2006-11-021-124/+122
| | | | | | | | | | | | | | Change H5Pset_elink_prefix to be more similar to rest of library and make a copy of the string passed in. Change H5Pget_elink_prefix to be link rest of library routines that query a string. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12844] Description:Quincey Koziol2006-11-021-5/+0
| | | | | | | Fix parallel build failure for property list class initialization refactor. Tested on: AIX (copper) w/parallel
* [svn-r12842] Description:Quincey Koziol2006-11-021-3/+521
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12803] Description:Quincey Koziol2006-10-231-1/+1
| | | | | | | | | | | | | | Finish new version of the I/O pipeline message, which is much smaller than the previous version. This version is used with the "use the latest version of the format" flag. Closed several memory leaks/overruns (found with valgrind). Also, lots of compiler & formatting cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-37/+37
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9857] Purpose: MaintenanceElena Pourmal2005-01-221-3/+0
| | | | | | | | | | | | | | Description: Removed PABLO from the source Solution: Platforms tested: arabica with 64-bit, copper with parallel, heping with GNU C and C++ and PGI fortran (but I disabled hl, there is some weird problem only on heping: F9XMODFLAG is not propagated to the Makefile files Misc. update:
* [svn-r9526] Purpose:Quincey Koziol2004-11-121-3/+1
| | | | | | | | | | | | | | Bug fix, sorta. Description: Revert change to H5Pget_data_transform() which changed len of buffer returned to be inconsistent with H5Iget_name(), etc. We should discuss this change and apply it to all the similar functions if we decide to change the return value. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9524] Purpose:Leon Arber2004-11-121-2/+3
| | | | | | | | | | | | | | | | | | | Bug Fix Description: Fixed off by one error in H5Pget_data_transform Solution: H5Pget_data_transform, when queried for the size of the property, should return strlen() + 1 so that the user can allocate memory for the terminating \0 in the string. Also fixed a typo in a comment in H5Ztrans.c Platforms tested: eirene, too minor to require further testing. Misc. update:
* [svn-r9466] Purpose:Quincey Koziol2004-10-271-8/+4
| | | | | | | | | | | Bug fix Description: Clean up potential buffer overflow in strncpy() Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9461] Purpose:Leon Arber2004-10-261-10/+35
| | | | | | | | | | | | | | | | | | | | | Changed functionality of H5Pget_data_transform Description: H5Pget_data_transform no longer allocates memory for the transform string...it is the user's responsbility to do so. Solution: Made H5Pget_data_transform be more in line with other functions that do similiar things: User now has to allocate memory for the string themselves and specify how much of the string should be copied into the buffer. There is also support for querying the length of the transform string. Platforms tested: sol + eirene + copper Misc. update:
* [svn-r9441] Purpose:Leon Arber2004-10-201-2/+2
| | | | | | | | | | | | | | | | | | | | Code refactor Changed functionality of H5Pget_data_transform Description: Rewrote much of H5Ztrans.c to use macros, which cut down on the amount of code significantly. H5Pget_data_transform now allocates memory for the data transform string, copies the string into this memory, and returns this pointer to the user, instead of returning a pointer to the internal transform string stored by hdf. It is the user's responsibility to free this memory when they are done with it. Platforms tested: sol + eirene + copper Misc. update:
* [svn-r9267] Purpose:Leon Arber2004-09-161-0/+53
| | | | | | | | | | | | | | | | | | | Added H5Pget_data_transform Added support for polynomial data transforms Description: There is now support for polynomial data transforms (ie, (2+x)*(x-5)) instead of just linear ones. Note that, in order to compute a polynomial transform, one temporary copy of the original data must be stored for each occurence of "x" in the transform expression. This can result in very high memory usage for expressions of high order. Platforms tested: sol + eirene Misc. update:
* [svn-r8760] Purpose:Quincey Koziol2004-06-291-1/+1
| | | | | | | | | | | | | Code cleanup & small bug fix Description: Regenerate dependency files Add htri_t as separate type from hbool_t for code tracing purposes. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8731] Purpose:Quincey Koziol2004-06-231-7/+4
| | | | | | | | | | | | | | | Code cleanup & minor optimization Description: Re-work the way interface initialization routines are specified in the library to avoid the overhead of checking for them in routines where there is no interface initialization routine. This cleans up warnings with gcc 3.4, reduces the library binary size a bit (about 2-3%) and should speedup the library's execution slightly. Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc34 h5committest
* [svn-r8482] Purpose:Quincey Koziol2004-05-051-7/+14
| | | | | | | | | | | | Code cleanup Description: Refactored data transform code to reduce amount of symbols in the global scope and also cleaned up & simplified the code a bit. Platforms tested: h5committest (minus copper, plus serial modi4) FreeBSD 4.9 (sleipnir) w & w/o parallel
* [svn-r8479] Purpose:Albert Cheng2004-05-031-0/+45
| | | | | | | | | | | | | New Feature Description: Add the data transform function, H5Pset_transform(). Platforms tested: "h5committested". Copper was down. Ran parallel tests in sol instead. Misc. update:
* [svn-r8426] Purpose: Bug fixRaymond Lu2004-04-281-2/+2
| | | | | | | | | Description: H5Pset_type_conv_cb and H5Pget_type_conv_cb weren't put into H5MPprivate.h. Another thing is the func type doesn't match the func field in the struct in these functions. Platforms tested: RH 8(fuss) and sleipnir
* [svn-r8424] *** empty log message ***Raymond Lu2004-04-271-0/+85
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* [svn-r7181] Purpose:Quincey Koziol2003-07-071-199/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6843] Purpose:Quincey Koziol2003-05-091-4/+4
| | | | | | | | | | | | Code cleanup Description: Clean up warnings exposed by compiling on O2K. Also, revert some of Bill and my changes to the H5S_mpi_opt_types_g, etc. and settle them back into their original location. Platforms tested: h5committested.
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