| Commit message (Collapse) | Author | Age | Files | Lines |
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The core changes are to revert previous modifications now that we use API context for fapl.
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HDFFV-10652
HDFFV-10443
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Modifications to fix H5Sencode bug when num points selected is > 2^32.
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This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
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and replace it with new url for COPYING file.
Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
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Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk. Brings along updated metadata cache
entry tagging, and the internal object flush routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Normalize against the trunk, in preparation for final merge.
Tested on:
MacOSX/64 10.11.3 (amazon) w/serial & parallel
(h5committest not required on this branch)
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(H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
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Also purged obsolete /*ARGSUSED*/ from the library.
Tested on:
Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial only
(these changes have been in revise_chunks for a long time)
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Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Misc. minor cleanups in preparation for merging "metadata rings" branch to
trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(Too minor to require h5committest)
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branch.
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* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
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Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
(h5committest forthcoming)
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Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
(h5committest forthcoming)
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project for
view objects. The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.
Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
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also added more test cases.
Tested on koala.
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Dectris people to test performance. The library's API function H5PSIdirect_write
is still in. I reorganized the internal library by adding H5D__pre_write function.
Tested on koala.
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HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access
Description:
Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access.
Reasons to break collective I/O:
- SET_INDEPENDENT
- DATATYPE_CONVERSION
- DATA_TRANSFORMS
- MPIPOSIX
- NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space)
- POINT_SELECTIONS
- NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage)
- FILTERS
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
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Bring back some more cleanups from the plist_encode_decode branch, clean up
some formatting and compiler errors, and add a few more property comparison
routines that we've skipped implementing in the past.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5committest)
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Clean up file driver property handling, along with some misc. warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe
(h5committest upcoming)
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Merge some of the changes on the plist_encode_decode branch back to the
trunk.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5committest)
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DXPL so that we don't have to insert and remove them everytime we
perform collective I/O.
Test with h5committest
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Update tracing information with new types introduced in "actual I/O mode"
query routines.
Tested on:
bin/reconfigure on jam
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pending a careful evaluation of enum conversion behavior.
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Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch
after it bakes over the weekend.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.8 (amazon) in debug mode
Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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When no conversion is involved in reading or writing the
data, overflowing values are retained. When conversion happens, the values become -1. The conversion function puts -1
when overflow happens. I added two new dataset transfer property to control whether to fill 0xff in the destination
data or convert to the destination data when overflow happens. The two new functions are H5Pset(get)_enum_conv_overflow. I also added test cases in enum.c and dtypes.c.
Tested on jam, koala, and heiwa.
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Commit metadata tagging framework.
Description:
This check-in contains a new framework whose goal is to apply
a tag value to each new entry in the metadata cache as it is created.
This tag value is such that it relates each piece of metadata to the
HDF5 object that it belongs to (dataset, group, et cetera).
This changeset includes the framework that applies the tags as
well as a suite of tests to verify correct tag application, though does
not yet make use of the tag values to flush/evict individual objects.
Please refer to the "flush/evict individual objects" RFC for further
discussion of these changes.
Tested:
jam, amani, linew (h5committest)
liberty, abe, blue print
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Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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There was a typo in the H5Pget_preserve that it was returning the wrong value.
Fixed. Also added a test in test/cmpd_dset.c to verify the correctness of
H5Pset_preserve and H5Pget_preserve.
Tested:
h5committest plus jam serial.
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