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* Add maps implementation (based on a patch supplied by MohamadNeil Fortner2017-05-111-1/+64
| | | | Chaarawi). Add h5dsm_map.c example. Other minor fixes/cleanup.
* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-5/+126
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| * [svn-r29077] Description:Quincey Koziol2016-02-101-4/+12
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29066] - fixing some of the internal usage of dxpls.Mohamad Chaarawi2016-02-081-22/+22
| |\ | | | | | | | | | - merge from trunk.
| * \ [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-071-1/+1
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| | * [svn-r28957] fix non-parallel bug.Mohamad Chaarawi2016-01-221-1/+2
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| * | [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-221-7/+30
| |\ \ | | |/ | | | | | | renaming metadata dxpl properties.
| | * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-5/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| | * [svn-r28916] Description:Quincey Koziol2016-01-151-1/+74
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| | * [svn-r28894] Description:Quincey Koziol2016-01-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * | [svn-r28915] Description:Quincey Koziol2016-01-151-23/+45
| | | | | | | | | | | | | | | | | | | | | | | | Review revisions on the way to the trunk. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28636] merge from trunk.Mohamad Chaarawi2015-12-141-7/+7
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| * | [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-520/+758
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| * | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-2/+70
| | | | | | | | | | | | | | | | branch.
* | | | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-7/+7
|\ \ \ \ | | |_|/ | |/| | | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * | | [svn-r28606] Description:Quincey Koziol2015-12-131-7/+7
| | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-0/+21
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* | | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-051-419/+670
|\ \ \ | |/ / | | | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
| * | [svn-r27811] Description:Quincey Koziol2015-09-161-419/+670
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* | | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-122/+109
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| * | [svn-r27768] Description:Quincey Koziol2015-09-141-122/+109
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27141] merge from trunk.Mohamad Chaarawi2015-06-031-9/+9
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-9/+9
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-4/+2
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25502] merge from trunk.Mohamad Chaarawi2014-07-311-16/+20
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| * [svn-r25496] Description:Quincey Koziol2014-07-301-16/+20
| | | | | | | | | | | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* | [svn-r25464] more alignment with trunk.Mohamad Chaarawi2014-07-221-1/+0
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* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-133/+197
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| * [svn-r25084] Description:Quincey Koziol2014-04-231-133/+191
| | | | | | | | | | | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r24998] Description:Quincey Koziol2014-04-091-0/+6
| | | | | | | | | | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* | [svn-r24301] merge from trunk.Mohamad Chaarawi2013-10-161-2/+0
|\ \ | |/ | | | | resolve conflicts, etc...
| * [svn-r24255] Description:Quincey Koziol2013-10-041-2/+0
| | | | | | | | | | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* | [svn-r24208] Merge revisions through r24202 from trunk to vol branchNeil Fortner2013-09-271-15/+11
|\ \ | |/ | | | | | | | | Tested: jam, koala, ostrich, platypus (h5committest) There are failures on platypus (cmake) that were present previously
| * [svn-r24101] Description:Quincey Koziol2013-09-051-15/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* | [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-1/+1
|\ \ | |/ | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| * [svn-r23713] Description:Quincey Koziol2013-05-211-1/+1
| | | | | | | | | | | | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* | [svn-r22809] - bring in plist encode decode changes from trunkMohamad Chaarawi2012-09-251-15/+247
|\ \ | |/ | | | | | | - remove hardocded error comparing tests for now because those will fail - regenerate Makefile.in s due to conflicting versions of autotools
| * [svn-r22807] Description:Quincey Koziol2012-09-251-15/+247
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* | [svn-r22806] Mohamad Chaarawi2012-09-251-84/+126
|\ \ | |/ | | | | merge from trunk up to 22805.
| * [svn-r22758] Description:Quincey Koziol2012-09-131-84/+126
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring generic improvements from encode/decode property list branch to the trunk. This includes a better version of the property list comparison routine, cleaned up compiler warnings, and some cleaned up property list callbacks. Also, started on changes to clean up parallel test output, so that it doesn't report successful tests from each process. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel Linux 2.6/32 (jam) w/debug Solaris 2.7/64 (linew) w/debug
* | [svn-r22704] merge from trunk up to 22703.Mohamad Chaarawi2012-08-211-48/+54
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| * [svn-r22627] Description:Quincey Koziol2012-08-031-48/+54
| | | | | | | | | | | | | | | | | | Merge some of the changes on the plist_encode_decode branch back to the trunk. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* | [svn-r22623] merge from tunkMohamad Chaarawi2012-08-021-136/+248
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| * [svn-r22608] Description:Quincey Koziol2012-07-261-136/+248
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* | [svn-r22584] merge from trunk and resolve type ID registrationMohamad Chaarawi2012-07-161-4/+25
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| * [svn-r22582] Description:Quincey Koziol2012-07-161-2/+22
| | | | | | | | | | | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* | [svn-r22542] update H5I_register_type usage to take a free_aux function callbackMohamad Chaarawi2012-07-101-2/+4
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* [svn-r22375] add a test to expose a memory leak when adding/removing the ↵Mohamad Chaarawi2012-05-181-1/+5
| | | | | | | | same property in property list multiple times. fix that bug. test with h5committest
* [svn-r22219] Description:Quincey Koziol2012-03-311-22/+32
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r21919] Description:Quincey Koziol2012-02-091-53/+53
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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