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* Also brings over the apostrophe fix
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* Merge doxygen plist tables changes from develop
* Doxy corrections
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* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
* Fixes for #1221.
* Updated overview.
* Fixed image dependencies.
* CMake updates.
* Fixed SET.
* Better?
* Update doxygen/dox/Overview.dox
* Fixed documentation errors. Added missing version info.
* Callback documentation updates.
* Fixed indexing errors in the outline.
* Doxygen-ized the HDF5 glossary.
* Fix a few minor typos
.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
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* Create a tag file for permalinks.
* Added DOXYGEN_TAG_FILE.
* Added Doxygen life-cycle examples for different modules.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixed warnings and started H5Epublic.h.
* Include H5FD* headers to correctly resolve references.
* Doxygen2 (#330)
* H5Eauto_is_v2.
* Added a few more calls.
* Added a few more H5E calls.
* First cut of H5E v2.
* Added the deprecated v1 calls.
* Updated spacing.
* Once more.
* Taking some inspiration from Eigen3.
* Add doxygen for the assigned functions: H5Pregister1,H5Pinsert1,H5Pen… (#352)
* Add doxygen for the assigned functions: H5Pregister1,H5Pinsert1,H5Pencode1, H5Pget_filter_by_id1,H5Pget_version, H5Pset_file_space,H5Pget_file_space. Someone already adds H5Pget_filter1. Also fixs an extra parameter 'close' call back function for HPregister2.
* doxygen work. fixs format by using clang-format.
* doxgen work for H5Pregister1 etc. Addressed Barbara and Gerd's comments.
For Quincey's comments, since we are not supposed to change the source code.
I leave this to future improvements.
* added documentation for H5P APIs (#350)
* add documenation for H5Pget_buffer,H5Pget_data_transform,H5Pget_edc_check,H5Pget_hyper_vector_size,H5Pget_preserve,H5Pget_type_conv_cb,H5Pget_vlen_mem_manager,H5Pset_btree_ratios
* format corrections
* fixed grammer
* fixed herr_t
* Better name.
* A fresh look.
* add doxygen to H5Ppublic.h
* use attention instead of warning
* Add doxygen comments in H5Ppublic.h (#375)
* Add doxygen comments in H5Ppublic.h
* H5Pset_meta_block_size
* H5Pset_metadata_read_attempts
* H5Pset_multi_type
* H5Pset_object_flush_cb
* H5Pset_sieve_buf_size
* H5Pset_small_data_block_size
* H5Pset_all_coll_metadata_ops
* H5Pget_all_coll_metadata_ops
* Add DOXYGEN_EXAMPLES_DIR to src/CMakeLists.txt
* Fix clang-format errors
* Fix filenames in doxygen/examples
* add doxygen to H5Ppublic.h (#378)
* add doxygen to H5Ppublic.h
* use attention instead of warning
Co-authored-by: Kimmy Mu <kmu@hdfgroup.org>
* Revert "add doxygen to H5Ppublic.h (#378)"
This reverts commit 2ee1821b138a5c00b15ea57ce9e950367480f5f2.
* Updated Doxygen variables.
* I forgot to copy two images.
* Enable desktop search by default.
* Add my assigned Doxygen documentation.
* Remove whitespace at EOL. Appease clang-format.
* Addressed Chris' comments.
* Added an alias for asynchronous functions.
* One space is enough for all of us.
* Slightly restructured RM page.
* address some issues
* reformatting
* Style external links.
* reformatting
* reformatting
* Added "Metadata Caching in HDF5" as a technical note example.
* Revise this soon!
* Added specification examples.
* Fixed references.
* Added H5AC cache image stuff and file format study.
* Added older FMT versions. Where did 1.0 go?
* Updated C/C++ note and replaced ambiguous labels.
* Reformat source with clang v10.0.1.
* Added the VFL technical note.
* Added what I believe might be called version 1.0 of the format.
* Added the remaining specs.
* Added H5Z callback documentation and fixed a few mistakes.
* Added dox for deprecated H5G calls and fixed a few snippet blockIDs.
* clang-format happy?
* Ok?
* Bonus track: Deprecated H5D functions.
* Carry over the more detailed group description.
* Added documentation for the missing and deprecated H5R calls.
* Life is easier and less repetitive w/ snippets. Use them!
* Eliminate the snippet block ID artifacts in the HTML rendering.
* Fixed snippet HTML artifacts and added a few missing calls.
* Under 20 H5Ps to go!
* Almost complete!
* "This is a form of pedantry up with which I will not put." (Churchill)
* Let's not waste as much space on bulleted lists!
* First complete (?) draft of the Doxygen-based RM.
* Completeness check and minor fixes along the way.
* Pedantry.
* Adding missing H5FD calls checkpoint.
* Pedantry.
* More pedantry.
* Added H5Pset_fapl_log.
* First draft of H5ES.
* Fixed warnings.
* Prep. for map module.
* First cut of the map module.
* Pedantry.
* Possible H5F introduction.
* Fix the indentation.
* Pedantry.
* Ditto.
* Thanks to the reviewers for their comments.
* Added missing images.
* Line numbers are a distraction here.
* More examples, references, and clean-up. Don't repeat yourself!
* Clang pedantry.
* Ditto.
* More reviewer comments...
* Templatized references and cleaned up \todos.
* Committing clang-format changes
* Fixed MANIFEST.
* Addressed Quincey's comments. (OCPLs)
* Fixed a few more \todo items.
* Fixed more \todo items.
* Added attribute life cycle.
* Forgot the examples file.
* Committing clang-format changes
* Pedantry.
* Live and learn!
* Added a sample H5D life cycle.
* Committing clang-format changes
* Pedantry.
Co-authored-by: kyang2014 <kyang2014@users.noreply.github.com>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: Kimmy Mu <kmu@hdfgroup.org>
Co-authored-by: Christopher Hogan <ChristopherHogan@users.noreply.github.com>
Co-authored-by: jya-kmu <53388330+jya-kmu@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling
Removed leading underscore(s) from header guard spelling. Used 2 regexes:
` _H5(.*)_H`
` __H5(.*)_H`
Applied case-insensitively to only .h files.
* Modified scripts that generate header files to not use underscore prefix
Interestingly, there was already no leading underscore in the trailing comment at the end of the file
* Fixed remaining -Wreserved-id-macro warning not caught by regex
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* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
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* Doxygen - added (mostly) beginner functions
* Removed duplicate H5Pset_szip function
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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