| Commit message (Collapse) | Author | Age | Files | Lines |
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Also cleaned up some other non-merged changes
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removed and replace it with new url for COPYING file.
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Remove all VMS-specific code from the library. The exception is the VMS
floating-point tests since those are special as VMS floats are odd.
Those files will be considered separately.
Fixes HDFFV-9495
Tested on: h5committest
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- Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
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Bring r25084, 25088, 25092, 25097 from trunk to 1.8 branch:
r25084:
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.
r25088:
Introduce "file I/O info" struct, to hold file & dxpl pointers, and start
propagating up through library.
r25092:
More migration to using H5F_io_info_t pointers and away from using
property list IDs internally. Also, clean up some compiler warnings in the
cache code.
r25097:
Make progress toward moving from DXPL IDs to property list structures
within the library. Also move the signature location code from the H5F
package to the H5FD package, where it's a better fit. Also, clean up some
more compiler warnings along the way.
Tested:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
(h5committested on trunk)
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Tested: jam, koala, ostrich, platypus (h5committest)
Log from r23987:
Merge r23939 from reduce_warning branch to trunk
Tested: jam, koala, ostrich (h5committest)
Log from r23939:
Fix unused variables warnings in trunk
Rename static functions in H5Adense.c, H5B2cache.c, H5Bcache.c
Switch these functions to use FUNC_ENTER_STATIC* macros
Tested: koala
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since we don't plan to support it on OpenVMS. I updated vms/src/h5pubconf.h, too.
Tested on jam but not on OpenVMS yet.
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Bring r23713 and r23717 from trunk to 1.8 branch:
Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
Big-Endian Linux/64 (ostrich)
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of code from the trunk. It fixes the problem by first iterating
through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message.
Then the function flushes all opened files.
Tested with h5committest.
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Bring r23549 from trunk to desy_1_8 branch:
More misc. cleanups, but main change is to make an "extern" header file
for the plugin interface.
Tested on:
Mac OSX/64 10.8.3 (amazon)
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H5Pocpl.c.
Tested on koala - no code change.
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into this 1.8 DESY branch.
Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
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Bring r22758 from trunk to 1.8 branch:
Bring generic improvements from encode/decode property list branch to
the trunk. This includes a better version of the property list comparison
routine, cleaned up compiler warnings, and some cleaned up property list
callbacks. Also, started on changes to clean up parallel test output, so that
it doesn't report successful tests from each process.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel
(h5committested on trunk)
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Bring r22627 from trunk to 1.8 branch:
Merge some of the changes on the plist_encode_decode branch back to the
trunk.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5committest)
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Bring r22608 from trunk to 1.8 branch:
Switch propert list/class iteration from internal to external form of
iteration, cleaning up and simplifying the code a bit.
Bring other general improvements from plist_encode_decode branch back to
trunk.
Clean up many warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN
(too minor to require h5committest)
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in, and HDF5 files.
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Bring r21919-21924 from trunk to 1.8 branch: cleanup FUNC_ENTER macros,
etc.
Also removed Subversion mergeinfo tags from a few directories and files.
These are artifacts from non-root merges using pre-1.6 Subversion clients. (This
should fix the problem of unchanged directories looking "changed" during
checkins.)
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & production
(daily tested on trunk)
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Bring r20535 & r20536 from trunk to 1.8 branch:
Add explicit test that checks that the 'fileno' field in H5O_info_t
is the same for objects in the same file, whether the file was opened twice
or not.
Clean up various warnings & code formatting issues.
Bring changes from Coverity branch to trunk:
r20085:
Purpose: Fix coverity issue 793
Description: Modified H5S_hyper_project_simple_higher() to free the entire span
list in new_space on failure.
r20091:
This is a fix for coverity bug #1683.
Changed the two printfs to use %lu (unsigned long) for printing "dset_size".
r20162:
Purpose: Fix coverity issue 785
Description: Modified H5T_enum_nameof() to free "name" on failure if it was
allocated. Also clarified some code in H5S_hyper_rebuild_helper().
r20189:
Addressed coverity defect 783.
H5SL_new_node() in H5SL.c was failing to free space allocated in its
first alloc if the second alloc failed. Added a call to H5FL_FREE
to address this issue.
This is purely to keep coverity happy -- if this code is ever triggered,
we have much larger problems.
Note that this fix will trigger an unused return value complaint
from coverity next week.
r20190:
Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call.
r20191:
Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN).
r20232:
Addressed coverity issues 923-925. Replaced calls to sprintf with calls
to HDsnprintf.
r20233:
Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c.
r20234:
Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c.
r20271:
Purpose: Fix coverity issue 784
Description: Modified H5_debug_mask() to keep a list of files opened for use as
a debugging output stream, and modified H5_term_library to close these files on
exit.
r20272:
addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing
code was safe, but modified to use strncpy() to keep coverity happy.
r20273:
Addresed coverity issues 1388 and 1389.
Initialized sel_iter->type to NULL in H5S_select_iter_init.
r20275:
Purpose: Fix valgrind issue in mf.c
Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so
the retrieved node gets freed.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
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Bring r18346 from trunk to 1.8 branch:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) w/debug)
(h5committested on trunk)
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Bring r17623 from trunk to 1.8 branch:
Bring "compress group's fractal heap" feature from feature branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Bring revision 16278 back from revise_chunks branch:
Update layout information in DCPL to unify all information in one
underlying property and switch to using H5O_layout_t for storing it, which
simplifies things considerably.
Also, fix many compiler warnings.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(Original patch tested on many machines)
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running on kagiso.
The static szip libraries are working as intended, but when shared szip
libraries are present and intended for use they cannot be opened. A check
has been implemented to test if shared szip libraries are functional on
current platform. If they are not, and the user is trying to use them,
szip is now disbaled and the user is informed.
This issue occurs on kagiso, and the resolution was tested on kagiso.
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Avoid storing the phase change values for attribute storage, unless
they are non-default values.
Tested on:
Mac OS X/32 10.4.8 (amazon)
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Add object creation property (H5P[s|g]et_obj_track_times) to disable
storing timestamps on objects, which makes the object's header size smaller.
Also, added object header status flags to H5O_info_t struct (for
H5Oget_info/H5Oget_info_by_idx) and cleaned up other field names in the
struct as well.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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Correct some errors in comments.
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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More progress on creation order for attribbutes - they are now basically
working for "compact" attribute storage.
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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object header
information, rather than storing it directly in the superblock.
This should make future updates to the superblock much less painful.
Tested on Windows, kagiso, and smirom.
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Add API routines for tracking & indexing the creation order on
attributes.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 6.2 (duty)
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haven't
been run in a while, so many of the source files were updated with
tracing macros, etc. No code changes by me.
Tested on kagiso and smirom.
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Propagate object creation properties up into group, dataset and named
datatype property lists, when those property lists are retrieved for
existing objects in a file.
Also, add H5Tget_create_plist() API routine, to allow named datatype
property lists to be retrieved for named datatypes.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's
design discussion.
Tested on:
Linux/32 2.6 (chicago)
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Refactor generic property list initialization code to put property list
specific routines in property list modules, instead of scattered to the four
winds. Also, introduce property list class initialization objects, to make
adding new property list classes in the library easier.
Fix daily test failure by using H5Pget_elink_prefix() API routine instead
of looking at the "raw" generic property list information.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & 1.6 compat
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Review, revise & checkin in Peter's latest round of object copy changes,
which add basic support for datasets & attributes with reference datatypes.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Feature
Description:
Revised Link APIs.
Solution:
New link APIs use H5L*
H5*create_expand do not create links to the objects created; this must
be done manually with H5Llink.
Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy),
and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query
API (H5Lget_linkinfo instead of H5Gget_objinfo).
All old APIs are still supported in H5Gdeprec.c .
Platforms tested:
sol, mir, copper
Misc. update:
Forgot to update MANIFEST and release docs. Will do after checkin.
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Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
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"Hide" file format changes (for now)
Description:
Add ifdef's (controlled by the --enable-group-revision configure flag)
to disable group revision changes to the file format, in order to allow alpha
release to go ahead without releasing an unsupported version into the wild.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 32-bit (heping)
Linux 2.4 64-bit (mir)
Solaris 2.9 (shanti)
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New/expanded features
Description:
Check in Peter's changed for the object copy code:
- Allow/fix copying datasets using named variable-length datatypes
- Start adding framework for property list to control how object
copying occurs.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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Configure feature
Description:
Added 'make trace' target.
Solution:
Added tracing to 1.7. This was done automatically in 1.6, but left out
of 1.7 until now (oops!).
Tracing in 1.7 only happens manually, when the user types 'make trace.'
Tracing automatically requires more framework than it's worth.
I also fixed a couple of tracing bugs and ran trace.
Platforms tested:
mir, sleipnir, modi4
Misc. update:
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New feature
Description:
Check in baseline for compact group revisions, which radically revises the
source code for managing groups and object headers.
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
This initiates the "unstable" phase of the 1.7.x branch, leading up
to the 1.8.0 release. Please test this code, but do _NOT_ keep files created
with it - the format will change again before the release and you will not
be able to read your old files!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!!
Solution:
There's too many changes to really describe them all, but some of them
include:
- Stop abusing the H5G_entry_t structure and split it into two separate
structures for non-symbol table node use within the library: H5O_loc_t
for object locations in a file and H5G_name_t to store the path to
an opened object. H5G_entry_t is now only used for storing symbol
table entries on disk.
- Retire H5G_namei() in favor of a more general mechanism for traversing
group paths and issuing callbacks on objects located. This gets us out
of the business of hacking H5G_namei() for new features, generally.
- Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t
- Lots more...
Platforms tested:
h5committested and maybe another dozen configurations.... :-)
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Code cleanup
Description:
Merge back changes from "compact group" work that improve the
infrastructure of the library and may impact others. In this round of
merging, that includes:
- Move datatype allocation into single internal routine, instead of
duplicated code that was spread out in a dozen or so places.
- Clean up guts of object header routines (H5O_*) to allow for some of
the fancieroperations that need to be performed on groups, along with
some general improvements.
- Added a new error code
- Some minor cleanups in other code....
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Mac OS X
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Code cleanup
Description:
Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.
Solution:
Ran this script in each directory:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
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New feature
Description:
Add group creation & access property lists, dataset access property lists
and named datatype creation & access property lists. Currently have
<foo>_extend() API names, which will need to be changed for the final release.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (heping)
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