| Commit message (Collapse) | Author | Age | Files | Lines |
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New Features!
Description:
Start migrating the internal use of property lists in the library from the
older implementation to the new generic property lists.
Currently, only the dataset transfer property lists are migrated to the
new architecture, all the rest of the property list types are still using
the older architecture.
Also, the backward compatibility features are not implemented yet, so
applications which use dataset transfer properties may need to make the
following changes:
H5Pcreate(H5P_DATASET_XFER) -> H5Pcreate_list(H5P_DATASET_XFER_NEW)
and
H5Pclose(<a dataset transfer property list>) -> H5Pclose_list(id)
This still may have some bugs in it, especially with Fortran, but I should
be wrapping up those later today.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Update
Description:
Changed
#include <hdf_file.h>
construct to
#include "hdf_file.h"
so that the GNU compiler can more easily pick up the dependencies
which it places in the .depend and Dependencies files. Also
regenerated the Dependencies to go along with this.
Platforms tested:
Linux
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C++ compatibility fix
Description:
'delete' is a reserved word in C++
Solution:
Change structure member named 'delete' into 'del'
Platforms tested:
FreeBSD 4.2 (hawkwind)
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Code checkpoint
Description:
Checkpointing generic property code before removing the older [non-generic]
property list implementation and switching all the property lists to use
the generic code.
Generic properties are feature complete and as fully tested as I can
determine.
Platforms tested:
FreeBSD 4.2 (hawkwind)
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Code cleanup for C++
Description:
'xor' is a keyword in C++, causing problems compiling the library with a
C++ compiler.
Solution:
Change variables and structure fields from 'xor' to 'xor_val'
Platforms tested:
FreeBSD 4.2 (hawkwind)
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Bug fix
Description:
When the v1.2 compatibility code was turned on, internal functions in the
library were getting confused.
Solution:
Separated guts of H5Pget_driver call into an API function (the definition
of which depends on the compatibility switch) and an internal function
which always behaves like the v1.3/4 function. Replaced API function calls
in the library code with the internal function.
Platforms tested:
FreeBSD 4.2 (hawkwind)
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Code checkpoint
Description:
More generic property functionality added and debugged.
Platforms tested:
FreeBSD 4.1.1 (hawkwind)
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Code development
Description:
Increment bug fixes and some new API functions to generic property list
code.
Platforms tested:
FreeBSD 4.1.1 (hawkwind)
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API cleanup
Description:
Tweaked some parts of the generic properties API to reduce warnings.
Platforms tested:
FreeBSD 4.1.1 (hawkwind) & SGI O2K (modi4)
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Code updates
Description:
Finished fleshing out code for generic properties, although they are not
used anywhere in the library yet.
Platforms tested:
FreeBSD 4.1.1 (hawkwind)
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Bug Fix
Description:
Generic property lists were leaking memory.
Solution:
Tied them into the regular cleanup code called at the library's termination
Platforms tested:
Solaris 2.6 (baldric) & FreeBSD 4.1.1 (hawkwind)
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* 2000-11-10 Robb Matzke <matzke@llnl.gov>
Changed `class' to `cls' in various places
since the former is a C++ reserved word and some C compilers (like
the one on blue) complain.
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Maintainance & performance enhancements
Description:
Re-arranged header files to protect private symbols better.
Changed optimized regular hyperslab I/O to compute the offsets more
efficiently from previous method of using matrix operations.
Added sequential I/O operations at a more abstract level (at the same level
as H5F_arr_read/write), to support the optimized hyperslab I/O.
Platforms tested:
Solaris 2.6 (baldric) & FreeBSD 4.1.1 (hawkwind)
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yet, but it's
close. This shouldn't interfere with other development work. (I think.. :-)
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H5Eset_auto(NULL,NULL)
has turned off error reporting in the library.
Also, changed the way property lists are managed and closed so that they
can be automatically closed when the library terminates.
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----------------------
./src/H5.c
Fixed more dependency problems in H5_term_library(). There was
a bug in the previous version that could cause the wrong EOF
marker to be written to the boot block under certain
circumstances. Hopefully this fixes it although I don't ready
access to a test case (Mark Miller will test it).
./src/H5F.c
./src/H5Fprivate.h
Added an H5F_close_all() that is similar to
H5F_term_interface() but which doesn't close the
interface. Files that don't have open object headers are
closed, others are delayed until all object headers close. All
files are flushed.
./src/H5ACprivate.h
./src/H5Bprivate.h
./src/H5Dprivate.h
./src/H5Eprivate.h
./src/H5Fprivate.h
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gpublic.h
./src/H5HGprivate.h
./src/H5HLprivate.h
./src/H5Iprivate.h
./src/H5MFprivate.h
./src/H5MMprivate.h
./src/H5Oprivate.h
./src/H5Pprivate.h
./src/H5Ppublic.h
./src/H5RAprivate.h
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5Vprivate.h
./src/H5Zprivate.h
./src/H5private.h
./src/H5public.h
Reindented after __DLL__ was added.
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changed the HDF5DLL and HDF5GLOBAL to __DLL__ and __DLLVAR__
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----------------------
./bin/trace
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5S.c
./src/H5T.c
Output-only arguments have their addresses printed during
tracing and added symbolic output for the H5F_driver_t
arguments. That's another reason that we should be careful to
add `/*out*/' after arguments that are output-only and
`/*in,out*/' after arguments that are used for both input and
output values.
No internal function calls H5Pget_class() anymore.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
Added H5Tget_overflow() and H5Tset_overflow() so the
application can query or set a function that will be called
whenever an overflow occurs. Implemented as documented in
previous e-mail except the overflow handler gets two buffers:
one that contains the source value and one to receive the
optional destination value.
./test/dtypes.c
Tests overflow handler.
./src/H5.c
We have to declare fdopen() because I'm getting errors when
compiling on Irix64 even though we include <stdio.h> as
documented in the fdopen() man page.
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from H5C to H5P
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while he is visiting LLNL. I changed the default creation template
offset and length to 4. Will fix the problem later.
Changes since 19980205
----------------------
./src/H5H.c
./src/H5Hprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Odspace.c
./src/H5Ostab.c
./src/debug.c
./html/H5.format.html
Added an extra 4-byte field after the heap magic number for
alignment on the DEC alpha. Changed object header message
alignment to 8-bytes.
./src/H5F.c
./src/H5Farray.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5O.c
./src/H5Odtype.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5detect.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/hyperslab.c
./test/istore.c
./test/th5p.c
./test/theap.c
Fixed a few irix64 warnings regarding size_t vs. int,
variables set but not used, printf formats
./config/irix64
Added `-woff 1196' to get rid of errors about __vfork() being
implicitly defined in a system header file.
./src/H5B.c
Fixed a stack alignment problem.
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The default file addr and size sizes for new files are the
same as sizeof(size_t) on the machine that creates the
file. They used to always be 4.
./src/H5Pprivate.h
./src/H5Psimp.c
Fixed `start' and `nelmts' arguments to be `size_t'.
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----------------------
./INSTALL
Added instructions for which C flags to set for debugging.
./src/H5C.c
./src/H5Cpublic.h
H5Cset_chunk() takes const pointer.
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
Added H5Dextend() to extend the dimensions of a dataset.
./src/H5Osdspace.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
./test/cmpd_dset.c
./test/dsets.c
./test/th5p.c
Added the optional `maxdims' argument to H5Pcreate_simple()
and defined constant H5P_UNLIMITED which can appear in the
maxdims. Added `const' to arguments.
Implemented H5Pcopy()
Removed the unused file argument from H5P_modify.
Added H5P_extend().
Removed the `flags' field from simple data types and we
determine if the `max' or `perm' arrays are valid by looking
at the pointer. Cleaned up the H5O_sdspace_debug output.
./src/H5T.c
Fixed a printf format.
./MANIFEST
./test/Makefile.in
./test/extend.c [NEW]
Added a test for multi-dimensional unlimited dimensions.
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----------------------
./RELEASE
Added Library functions that I missed the first time.
./html/Datasets.html
Added an example for Elena's question about how to read a
single member of a compound data type so it becomes an array
of that member in memory.
./src/H5Pprivate.h
Fixed the prototype for H5P_get_hyperslab() to match the
definition.
./src/H5Psimp.c
Oops, added the kludge back in for the offset argument, which
is still an `intn' instead of a `size_t'.
./src/H5.c
./src/H5public.h
./src/H5F.c
./src/H5T.c
./src/H5Tpublic.h
Changed H5init() to H5open() and added an H5close() to fit our
create/open/close paradigm. The H5open() happens
automatically on the first call to the HDF5 library. The
H5close() happens automatically on exit() (unless the app
turns off that feature). H5close() closes all datasets and
files and releases all resources used by the library.
./test/dsets.c
Added calls to H5open() and H5close() to test them.
./test/dtypes.c
Removed call to H5init() since we no longer need it there.
./src/H5Fstdio.c
Changed the PABLO_MASK to the right value. Thanks Kim.
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BTRUE/BFALSE/BFAIL from code.
Changed interface to the H5P..hyperslab functions to 'int' instead of 'size_t'.
Cleaned up lots of warnings on IRIX 6.2 platform. Minor other tweaks to get
to a mostly clean build on the SGI. It still whines about 'long long' being
non-standard and some "pointless comparison of unsigned with 0" but those
aren't big problems.
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----------------------
./src/H5D.c
./src/H5Dpublic.c
Added H5Dget_space().
./src/H5Gstab.c
./src/H5H.c
Fixed a comparison with size_t against <0.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Changed `intn' to `int' for public function args and
returns. H5Pget_hyperslab() returns the dimensionality.
./test/testhdf5.h
Clears error stack more frequently.
./src/H5Psimp.c
./test/cmpd_dset.c
Impelementing data space conversion.
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----------------------
./Makefile.in
./config/commence.in
With GNU make you can now use `-j' and `-l' options and things
get built correctly. I can do a `make -j -l6 test' from a
clean hdf5 source tree (after configure) in 45 seconds (8 to
build dependencies, 26 to compile everything, and 11 to run
the tests).
./src/H5Gnode.c
Removed a comment that no longer applies.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Changed H5Pselect_hyperslab() to H5Pset_hyperslab() and added
H5Pget_hyperslab() and H5P_get_hyperslab().
Replaced a couple short memset() calls with a for loop.
Removed `if (foo!=NULL)' from around H5MM_xfree() calls.
Clear hslab_def when the hyperslab disappears.
./src/H5Tpublic.h
Removed trailing enum comma.
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routine are similar
to the HDF4 SDwritedata routine: start, count & stride. The start indicates
the base location of the hyperslab, count indicates the number of elements in
the hyperslab and stride indicates the packing of the hyperslab. The hyperslab
is assumed to be the same rank as the dataspace it is located within. The
hyperslab is stored for future use, no I/O occurs in this routine.
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----------------------
./src/*.h
Fixed indentation where indent(1) screwed up. This isn't by
any means the final say, but it's better than it was.
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5M.c
./src/H5P.c
./src/H5T.c
./src/H5Tconv.c
./src/debug.c
./test/dtypes.c
./test/istore.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
Removed some atom functions from the API and made them
library-scope. Also changed some names by removing the
redundant `atom' from the name and by adding a `_' after the
`H5A'.
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----------------------
./Makefile.in
Added more dependencies to .PHONY.
./src/H5D.c
The write side of the I/O pipeline is implemented now too.
Things are looking good for the prototype and it's just a
matter of populating the library with the data type and data
space conversion functions.
./src/H5Farray.c
./src/H5Fprivate.h
./test/istore.c
Changed the order of the arguments for H5F_arr_read() and
H5F_arr_write().
./src/H5P.c
./src/H5Pprivate.h
Changed the names of the arguments of H5P_find(). Fleshed out
the mgath and fscat callback types.
./src/H5Psimp.c
Added stubs for H5P_simp_mgath() and H5P_simp_fscat() that
operate on the entire data space. Quincey, once you have the
data space hyperslab stuff in place let me know and I'll
finish the H5P_simp_*() functions to do partial I/O. Or you
can take a look at it too if you like; there's some comments
in there for you.
./src/H5V.c
./src/H5Vprivate.h
Changed dimensionality arguments from `size_t' to `intn' to be
consistent with the rest of the library and to get rid of
warnings on 64-bit Irix.
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----------------------
./MANIFEST
./src/H5Psimp.c [NEW]
./src/Makefile.in
Added H5Psimp.c and populated it with some conversion
functions. Eventually the parts of H5P.c that operate on
simple data spaces will be migrated to H5Psimp.c and other
files will be created for other types of data spaces.
./src/H5D.c
The read pipeline, H5Dread(), has been updated to handle data
space conversion although the actual simple data space
conversion functions don't do anything yet. But we're getting
really close!
./src/H5P.c
./src/H5Pprivate.h
Added H5P_find() to locate data space conversion functions.
Added typedefs for structs related to data space conversion.
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./src/H5Cprivate.h
Changed H5Csetparm() to H5Cset_prop() and changed it to pass
property values by value instead of reference. Changed
H5Cgetparm() to H5Cget_prop(). Changed data types of file
creation properties so the application can use `int' or
`size_t' for most properties. Properties and their types are
documented in H5Cget_prop().
Changed H5C_class() to H5Cget_class() to make the naming more
uniform across packages.
./src/H5Cpublic.h
Changed names of properties to make them more uniform across
packages: H5F_USERBLOCK_SIZE became H5F_SIZEOF_USERBLOCK,
H5F_OFFSET_SIZE became H5F_SIZEOF_ADDR, H5F_LENGTH_SIZE became
H5F_SIZEOF_SIZE.
./src/H5D.c
./src/H5Dprivate.h
Added support for chunked data storage. There still isn't any
support for data type conversion or data space conversion, so
chunked storage doesn't do much at this time.
./src/H5E.c
./src/H5Epublic.h
Added the H5E_TEMPLATE major error number. I'm about the
change the HGOTO_ERROR() and HRETURN_ERROR() macros to take an
error string as an additional argument instead of specifying
it as a comment.
./src/H5Fistore.c
Added `const' to the `buf' argument of H5F_istore_write()
although this temporarily causes a compiler warning.
./src/H5Fprivate.h
Changed data types of certain file-related variables from
types like `uint8' to `uintn' since the library data types
should not depend on the file data types.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Moved H5Pget_lrank() to H5Pget_ndims(), and H5Pget_ldims() to
H5Pget_dims() to make naming more uniform. Dimensions should
always be of type `size_t'. Similarly for H5P_get_lrank() and
H5P_get_ldims().
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Removed the interface initialization argument from
FUNC_ENTER() and made it a locally-defined preprocessor
symbol, INTERFACE_INIT.
Changed `offset' to `address' and `length' to `size' in
documentation so it's more consistent. `Offset' still appears
occassionally when it refers to a byte offset within some
other data structure.
Moved interface termination function prototypes from public
header files to .c files and made them static.
./src/H5.c
./src/H5public.h
Added H5init() because it's possible that the predefined data
types are not initialized. This happens only if the first
call to the hdf5 library passes a predefined data type symbol
as an argument. There should be some way to fix this...
./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
The free_func returns SUCCEED or FAIL, although the return
value is ignored by H5A. This is so we can use the various
H5*_close() functions to free things.
H5Ainc_ref() and H5Adec_ref() are no longer public. Many of
the other atom functions should also be made private, but I'll
save that for later...
Added additional template groups called H5_TEMPLATE_0 through
H5_TEMPLATE_7 that are used by the various template
subclasses.
Increased the number of bits used for atom groups to prevent
negative atoms.
./src/H5AC.c
./src/H5ACprivate.h
Changed H5AC_new() to H5AC_create() to make names more consistent.
./src/H5B.c
./src/H5Bprivate.h
Changed H5B_new() to H5B_create() to make names more consistent.
./src/H5C.c
./src/H5Cprivate.h
./src/H5Cpublic.h
Now supports multiple subclasses of templates, although it's
done with big switch statements. The default values for
templates are defined in the source file to which that
template belongs. This got rid of lots of needless
preprocessor constants.
Added H5Ccreate() to create a new template. Changed
H5C_release() to H5Cclose() to make the naming more
consistent.
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
Enhanced to use the new dataset interface, and uses the enhanced
data type and data space interfaces, which haven't been
completely implemented. The dataset interface doesn't handle
non-contiguous storage, compression, or data type and space
conversions yet.
./src/H5F.c
./src/H5Fprivate.h
./src/H5Fpublic.h
Removed H5Fflush() since just calls H5F_flush(), which doesn't
do what the user would probably think it does, namely, flush
everything. It only flushes those things sitting in the H5AC
cache and the boot block.
Changed the `file_create_parms' field of H5F_low_t to just
`create_parms' since the `file' part is obvious.
./src/H5Fistore.c
Added some support for external files. Mostly just in the
file format and not supported much by the library yet. I need
to finish some dataset functions first.
Changed H5F_istore_new() to H5F_istore_create() to make names
more uniform across packages.
./src/H5Flow.c
Flushing a file causes the file to be physically extended to
the logical eof. This prevents H5F_open() from thinking a
file has been truncated. Most of the time the file will
already be that large, and when it isn't Unix will often just
allocate the final block anyway.
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5Gstab.c
Removed H5G_basename()
Removed (temporarily) data type information from symbol table
entries and renamed H5G_CACHED_SDATA to H5G_CACHED_SDSPACE to
reflect that it's a simple data space and has nothing to do
with raw data.
Changed H5G_node_new() to H5G_node_create() and H5G_stab_new()
to H5G_stab_create() to make names more uniform across
packages.
Fixed an undefined address bug that happens when H5G_node_debug()
program doesn't pass enough info to H5G_node_load().
./src/H5H.c
./src/H5Hprivate.h
Changed H5H_new() to H5H_create() to make the names more
uniform across packages.
./src/H5M.c
./src/H5Mprivate.h
./src/H5Mpublic.h
Nulled all the create functions. Most of the other callbacks
are to public functions. Removed H5Mcreate().
Changed hobjtype_t to group_t since it has to be the same
thing anyway.
./src/H5O.c
./src/H5Oprivate.h
./src/H5Osdim.c
./src/H5Osdtyp.c
Changed H5O_SIM_DIM to H5O_SDSPACE (simple data space) since
`simple data space' is its official name, not `simple
dimensions'. Will eventually add H5O_CDSPACE for comples data
spaces. Changed _sim_dim_ to _dspace_.
Replaced H5O_SIM_DTYPE and the compound data type messages
with a single H5O_DTYPE message. Changed _sim_dtype_ to _dtype_.
Changed H5O_STD_STORE to H5O_CSTORE (contiguous storage) since
contiguous storage is not necessarily standard. Changed
_std_store_ to _cstore_ in H5Ocstore.c
Added the H5O_EFL (external file list) message.
Changed H5O_new() to H5O_create() to make names more uniform
across packages.
./src/H5Oefl.c NEW
External file list message for specifying which non-hdf5 files
contain raw data for a dataset.
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
Renamed and moved data structures to make the names conform to
our naming scheme.
./src/H5T.c
./src/H5Tprivate.h
./src/H5Tpublic.h
./src/H5Tpkg.h NEW
Data structures redesigned to be more flexible. The interface
was redesigned to make it more regular and to make some names
more uniform across packages.
./src/H5detect.c
Output was changed to produce a file that conforms to the hdf5
coding standard.
./src/Makefile.in
Generates H5Tinit.c by running H5detect.
./src/debug.c
Moved command argument processing.
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guarantee that
the H5T & H5P interfaces are initialized (from H5D_init_interface)
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to the disk
correctly, but only in "native" format. I'm adding the data-type conversions
and checking the reading later today.
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dataspace.
Also tweaked the data structures, and fixed a few bugs.
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cleaned up more
code, etc.
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./src/H5Aproto.h
./src/H5Bproto.h
./src/H5Cproto.h
./src/H5Dproto.h
./src/H5Eproto.h
./src/H5Fproto.h
./src/H5Gproto.h
./src/H5Hproto.h
./src/H5MFproto.h
./src/H5MMproto.h
./src/H5Mproto.h
./src/H5Oproto.h
./src/H5Pproto.h
./src/H5Tproto.h
./src/H5proto.h
These files were removed from the library and renamed by
changing `proto' to `public'.
./src/H5ACpublic.h NEW
./src/H5Apublic.h NEW
./src/H5Bpublic.h NEW
./src/H5Cpublic.h NEW
./src/H5Dpublic.h NEW
./src/H5Epublic.h NEW
./src/H5Fpublic.h NEW
./src/H5Gpublic.h NEW
./src/H5Hpublic.h NEW
./src/H5MFpublic.h NEW
./src/H5MMpublic.h NEW
./src/H5Mpublic.h NEW
./src/H5Opublic.h NEW
./src/H5Ppublic.h NEW
./src/H5Tpublic.h NEW
./src/H5public.h NEW
These files came from the old H5*proto.h files.
./src/Makefile
./src/Makefile.in NEW
Removed. Now generated automatically from Makefile.in by
running configure.
./src/h5oplat.h
./src/hdf5fort.h
./src/hdf5gen.h
./src/hdf5glob.h
./src/hdf5lims.h
./src/hdf5meta.h
./src/hdf5pabl.h
./src/hdf5plat.h
./src/hdf5port.h
./src/hdf5type.h
Removed. The contents of these files has moved to other
header files or source files depending on it's nature.
./src/H5.c
./src/H5A.c
./src/H5B.c
./src/H5C.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5H.c
./src/H5M.c
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Ocont.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Ostab.c
./src/H5P.c
./src/H5T.c
Fixed include files. Moved some things from old headers into
these files.
./src/H5ACprivate.h
./src/H5Aprivate.h
./src/H5Bprivate.h
./src/H5Cprivate.h
./src/H5Dprivate.h
./src/H5Eprivate.h
./src/H5Fprivate.h
./src/H5Gprivate.h
./src/H5Hprivate.h
./src/H5MFprivate.h
./src/H5MMprivate.h
./src/H5Mprivate.h
./src/H5Oprivate.h
./src/H5Pprivate.h
./src/H5Tprivate.h
./src/H5private.h
./src/debug.c
Fixed include files.
./src/hdf5.h
This is now the top-level *PUBLIC* include file. It should
never appear in the library *.c files.
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