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* Add maps implementation (based on a patch supplied by MohamadNeil Fortner2017-05-111-0/+8
| | | | Chaarawi). Add h5dsm_map.c example. Other minor fixes/cleanup.
* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-0/+14
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| * [svn-r29607] Description:Quincey Koziol2016-04-021-0/+2
| | | | | | | | | | | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
| * [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
| * [svn-r29086] missed renaming the GET collective metadata read requirement.Mohamad Chaarawi2016-02-111-1/+1
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| * [svn-r29084] Revert of:Dana Robinson2016-02-111-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
| * [svn-r29079] rename the coll read requirement function.Mohamad Chaarawi2016-02-101-1/+1
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| * [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-071-0/+2
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| | * [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-041-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| | * [svn-r28916] Description:Quincey Koziol2016-01-151-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * | [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-0/+2
| | | | | | | | | | | | | | | - set default to FALSE - fix some bugs.
| * | [svn-r28636] merge from trunk.Mohamad Chaarawi2015-12-141-1/+0
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| * | [svn-r27976] merge from trunk.Mohamad Chaarawi2015-10-061-0/+13
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| * | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-0/+8
| | | | | | | | | | | | | | | | branch.
* | | | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-1/+0
|\ \ \ \ | | |_|/ | |/| | | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * | | [svn-r28606] Description:Quincey Koziol2015-12-131-1/+0
| | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-0/+13
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| * | [svn-r27155] Change H5Pget_virtual_view to return herr_t and take a pointer ↵Neil Fortner2015-06-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | to the view as a parameter. Also fix bug in H5Pget_virtual_printf_gap. Tested: jam
| * | [svn-r27104] Add support for printf-style source dataset name resolution.Neil Fortner2015-05-221-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | Passes use case test, no regression tests yet. Add functions H5Pset/get_virtual_printf_gap (not tested yet). Other minor fixes/cleanup. Tested: ummon
| * | [svn-r27049] Rename H5Pset/get_virtual_dataspace_bounds to ↵Neil Fortner2015-05-111-3/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5Pset/get_virtual_view and rename enum argument. Add support for AND and NOTA/NOTB operations with unlimited selections. Add some tests for unlimited selections. Other minor fixes/cleanup. Note: "clipped" status of unlimited selections is not properly updated with H5Sselect_copy. This is a deliberate omission since fixing it would take work and we are planning to eliminate the clipped status anyways. Tested: ummon
| * | [svn-r27022] Add new functions H5Pset_virtual_dataspace_bounds andNeil Fortner2015-05-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | H5Pget_virtual_dataspace_bounds. Minor refactor of dataset initialization code to make this cleaner. Update h5_vds-percival-unlim-maxmin.c Other minor fixes/cleanup. Tested: ummon
| * | [svn-r26198] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-171-0/+9
| |/ | | | | | | Commit progress through 1610 CST 2/17/15
* | [svn-r25502] merge from trunk.Mohamad Chaarawi2014-07-311-0/+3
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| * [svn-r25496] Description:Quincey Koziol2014-07-301-0/+3
| | | | | | | | | | | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-63/+65
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| * [svn-r25084] Description:Quincey Koziol2014-04-231-62/+62
| | | | | | | | | | | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r24993] Purpose:Dana Robinson2014-04-091-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Adds write tracking to the core VFD, which can be configured via the H5Pset/get_core_write_tracking() API call. When enabled and writing to the backing store is enabled, this feature will track writes and only write out the changed bytes on flush/close. Tested on: 32-bit LE linux (jam) w/ Fortran and C++ 64-bit BE linux (ostrich) 64-bit Darwin 12.5.0 (kite) All were tested using the core VFD w/ paging on (core_paged in the VFD list). Make check-vfd was also tested on jam.
* | [svn-r24940] merge from trunk.Mohamad Chaarawi2014-04-011-4/+3
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| * [svn-r24864] Description:Quincey Koziol2014-03-211-4/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* | [svn-r22995] merge from trunk up to 22994.Mohamad Chaarawi2012-10-311-2/+1
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| * [svn-r22992] Purpose:Jonathan Kim2012-10-301-2/+1
| | | | | | | | | | | | | | | | | | | | | | HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature Description: The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature. Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
* | [svn-r22868] Merging r22856 through r22867 from trunk.Mohamad Chaarawi2012-10-081-2/+2
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| * [svn-r22866] Description:Quincey Koziol2012-10-051-2/+2
| | | | | | | | | | | | | | | | | | Correct use of 'uint8_t' parameter type in public header file (which was causing Windows builds to fail). Tested on: Mac OSX/64 10.7.5 (amazon) w/debug (too minor to require h5committest)
* | [svn-r22809] - bring in plist encode decode changes from trunkMohamad Chaarawi2012-09-251-0/+4
|\ \ | |/ | | | | | | - remove hardocded error comparing tests for now because those will fail - regenerate Makefile.in s due to conflicting versions of autotools
| * [svn-r22807] Description:Quincey Koziol2012-09-251-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* | [svn-r22806] Mohamad Chaarawi2012-09-251-0/+14
|\ \ | |/ | | | | merge from trunk up to 22805.
| * [svn-r22763] Purpose:Jonathan Kim2012-09-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Fixed Daily test failed from the previous commit r22735. (ember) Also changed H5Pget_mpio_no_collective_cause() parameter type from H5D_mpio_no_collective_cause_t to uint32_t due to change to return combined bitmap value which can be not emun defined value. Tested: jam (linux32-LE), koala-pp (linux64-LE), ember, h5committest
| * [svn-r22735] Purpose:Jonathan Kim2012-09-041-0/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access Description: Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access. Reasons to break collective I/O: - SET_INDEPENDENT - DATATYPE_CONVERSION - DATA_TRANSFORMS - MPIPOSIX - NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space) - POINT_SELECTIONS - NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage) - FILTERS Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* | [svn-r22549] Mohamad Chaarawi2012-07-101-0/+1
| | | | | | | | | | | | | | | | | | | | move ref count management on the VOL struct inside the VLint code - H5Freopen still needs to be handled create the public interface for VOL callbacks: - unresolved issue with var_args update and create new API fapl calls to support stacking drivers: - need to add fapl copy callback fix a memory leak with registration of external plugins
* | [svn-r22465] add a vol_info parameter to the fapl and update some of the ↵Mohamad Chaarawi2012-06-151-1/+1
| | | | | | | | | | | | routines accordingly insert (commented out though for now) public version of the VOL callback
* | [svn-r22292] remove unnecessary lookup for object locations into VOLMohamad Chaarawi2012-04-171-0/+2
| | | | | | | | | | add a public API routine to set a user defined VOL driver some fixes to allow vol plugins to be created and used outside the library
* | [svn-r22274] merge from trunk, resolve conflictsMohamad Chaarawi2012-04-101-0/+11
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| * [svn-r22219] Description:Quincey Koziol2012-03-311-0/+6
| | | | | | | | | | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
| * [svn-r22171] Description:Quincey Koziol2012-03-281-0/+5
| | | | | | | | | | | | | | | | | | Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* | [svn-r21915] starting to set up vol frameworkMohamad Chaarawi2012-02-071-0/+5
|/ | | | fopen, fclose, fcreate routed through native vol
* [svn-r21508] Revoked svn check-ins 20913 and 20921 (fix for HDFFV-7579) ↵Dana Robinson2011-10-101-2/+0
| | | | pending a careful evaluation of enum conversion behavior.
* [svn-r21442] Description:Quincey Koziol2011-10-011-0/+36
| | | | | | | | | | | | | | | | | | | | | | Check in "actual I/O mode" feature to trunk. Will merge back to 1.8 branch after it bakes over the weekend. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r20913] Issue 7579 - The overflowing ENUM values are inconsistent. ↵Raymond Lu2011-05-271-0/+2
| | | | | | | | | | When no conversion is involved in reading or writing the data, overflowing values are retained. When conversion happens, the values become -1. The conversion function puts -1 when overflow happens. I added two new dataset transfer property to control whether to fill 0xff in the destination data or convert to the destination data when overflow happens. The two new functions are H5Pset(get)_enum_conv_overflow. I also added test cases in enum.c and dtypes.c. Tested on jam, koala, and heiwa.
* [svn-r20064] Purpose: Implement external file cacheNeil Fortner2011-02-081-0/+2
| | | | | | | | | Description: Implements a cache of files opened through external links. Adds the public functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and H5Frelease_file_cache(). Tested: jam, amani, heiwa (h5committest), fedora 64.
* [svn-r18864] Description:Quincey Koziol2010-05-201-1/+1
| | | | | | | | | | | | | | | | | | | | General cleanups to align metadata journaling branch and trunk Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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