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* [svn-r13070] Added shared message example program in hdf5/examples.James Laird2006-12-181-1/+0
| | | | | | Also cleaned up one old API routine in H5Ppublic that isn't used. Tested on smirom and kagiso. More testing to follow.
* [svn-r13045] Description:Quincey Koziol2006-12-121-0/+1
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12994] Description:Quincey Koziol2006-11-291-2/+7
| | | | | | | | | | | | | | | Propagate object creation properties up into group, dataset and named datatype property lists, when those property lists are retrieved for existing objects in a file. Also, add H5Tget_create_plist() API routine, to allow named datatype property lists to be retrieved for named datatypes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12983] Description:Quincey Koziol2006-11-271-4/+6
| | | | | | | | | Merge H5Pget/set_create_tracking / H5Pget/set_create_index routines into H5Pget/set_creation_order. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed ↵James Laird2006-11-171-7/+6
| | | | | | | | | | | SOHM table version and size information into the superblock to eliminate a read when loading it. This is a file format change, and hopefully the last one (knock on wood). Tested on kagiso and Windows (mostly just a SOHM change).
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-0/+8
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12848] Description:Quincey Koziol2006-11-021-1/+1
| | | | | | | | | | | | | | Change H5Pset_elink_prefix to be more similar to rest of library and make a copy of the string passed in. Change H5Pget_elink_prefix to be link rest of library routines that query a string. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12845] Description:Quincey Koziol2006-11-021-60/+72
| | | | | | | | | | | | | Finish refactoring job on the library's property list class initialization code, so that the library determines the parent class dependencies at run-time, eliminating the need for developers to initialize the classes in a particular order. Also eliminates some more redundant code... Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12842] Description:Quincey Koziol2006-11-021-11/+6
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12825] Description:Quincey Koziol2006-10-301-0/+2
| | | | | | | | Rudimentary support for creating creation order index (but not inserting links in it yet). Testedon: Mac OS X/32 10.4.8 (amazon)
* [svn-r12803] Description:Quincey Koziol2006-10-231-2/+2
| | | | | | | | | | | | | | Finish new version of the I/O pipeline message, which is much smaller than the previous version. This version is used with the "use the latest version of the format" flag. Closed several memory leaks/overruns (found with valgrind). Also, lots of compiler & formatting cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-4/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12656] Description:Quincey Koziol2006-09-111-52/+67
| | | | | | | | | | | | | | | Add "use the latest version of the file format" flag to the file access property list and internal file data structures. Fix bug where metadata block size was retrieved instead of the small data block size. Categorize property list routine prototypes in the public header file. Tested on: Mac OS/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12544] Description:Quincey Koziol2006-08-041-0/+2
| | | | | | | | | | | | | | Clean up compiler warnings/failures in test/links.c, especially when --disable-production flag used with --enable-group-revision Modify binary dumping in h5dump to clean up files created [a band-aid solution to not actually creating the files in the srcdir, but better than just leaving the files around... :-/ ] Tested: FreeBSD 4.11 (sleipnir) (w/ configure flags above) Too minor to require h5committest
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-0/+8
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12452] Purpose:James Laird2006-07-051-0/+7
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12221] Purpose:Quincey Koziol2006-04-101-0/+2
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12189] Purpose:Quincey Koziol2006-04-011-0/+7
| | | | | | | | | | | | | | New/expanded features Description: Check in Peter's changed for the object copy code: - Allow/fix copying datasets using named variable-length datatypes - Start adding framework for property list to control how object copying occurs. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11850] Purpose:James Laird2006-01-021-0/+7
| | | | | | | | | | | | | | Feature Description: Added character encoding and attribute creation property lists. Solution: Attributes' character encoding is set via the ACPL. The default is ASCII, with UTF-8 being the other option currently. Platforms tested: heping, mir, sleipnir, copper
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11386] Purpose:Quincey Koziol2005-09-121-0/+3
| | | | | | | | | | | | | | Code cleanup/reorganization Description: Merge back some more changes extracted from the "compact group" set. This bunch cleans up and prepares the H5G_* routines for eventual import of new features. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Mac OS X.4
* [svn-r11384] Purpose:Quincey Koziol2005-09-121-0/+2
| | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Merge back changes from "compact group" work that improve the infrastructure of the library and may impact others. In this round of merging, that includes: - Move datatype allocation into single internal routine, instead of duplicated code that was spread out in a dozen or so places. - Clean up guts of object header routines (H5O_*) to allow for some of the fancieroperations that need to be performed on groups, along with some general improvements. - Added a new error code - Some minor cleanups in other code.... Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Mac OS X
* [svn-r11337] Purpose:Quincey Koziol2005-09-011-1/+1
| | | | | | | | | | | | Code cleanup Description: Changed some scale+offset filter symbols from H5_SO_... -> H5Z_SO_... to indicate that they are in the H5Z package. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11326] Purpose:MuQun Yang2005-08-311-1/+1
| | | | | | | | | | | | | | | Updating scale offset filter. Description: Using enum to represent scale_offset type. Change the order of parameters of H5Pset_scaleoffset. Solution: Platforms tested: sol 2.9, Liunx 2.4, AIX 5.1 Misc. update:
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-10/+10
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10958] Purpose:Quincey Koziol2005-06-201-0/+24
| | | | | | | | | | | | | New feature Description: Add group creation & access property lists, dataset access property lists and named datatype creation & access property lists. Currently have <foo>_extend() API names, which will need to be changed for the final release. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping)
* [svn-r10688] Purpose:John Mainzer2005-04-281-3/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | Add API calls allowing user control of the metadata cache. Description: Prior to this update, the metadata cache was not configurable from outside the library. Solution: Add API calls allowing the user to configure the metadata cache either at file open time, or for any open file. Also added calls permitting the user to monitor cache size and hit rate. These latter facilities are needed for "manual" cache size control Platforms tested: h5committested Misc. update:
* [svn-r10672] Purpose:Xiaowen Wu2005-04-261-1/+1
| | | | | | | | | | | | | | | | | | | | | New feature. Description: The H5Pset_scaleoffset is changed for the scaleoffset filter to handle both integer and floating-point data. Currently, the D-scaling method from GRIB has been implemented for compressing floating-point data. Solution: One more parameter is added to the H5Pset_scaleoffset interface to let user specify what type of data is used and what method to use as well as corresponding parameters. Platforms tested: heping Misc. update: Needs to update libtool's version number
* [svn-r10025] Purpose:Xiaowen Wu2005-02-171-0/+1
| | | | | | | | | | | | | | New feature. Description: Add the scaleoffset internal library filter. Solution: Platforms tested: heping, copper, arabica Misc. update:
* [svn-r9758] Purpose:MuQun Yang2005-01-061-0/+1
| | | | | | | | | | | | | | | | | Adding framework of N-bit filter Description: N-bit filter is required for NetCDF project. To add N-bit filter, configure.in configure, Makefile.in under src and other filter-related source code needs to be updated. Currently, N-bit tests are turned off from the library. So the change will affect daily test. Solution: Platforms tested: sol 2.7, linux 2.4, aix 5.1 Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-22/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9584] Purpose:Quincey Koziol2004-11-271-2/+2
| | | | | | | | | | | | | | | Code optimization Description: Revise mechanism for calling H5open/H5check to better avoid calling them from internal libray code. Only copy a datatype's group entry information if it has some. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9461] Purpose:Leon Arber2004-10-261-1/+1
| | | | | | | | | | | | | | | | | | | | | Changed functionality of H5Pget_data_transform Description: H5Pget_data_transform no longer allocates memory for the transform string...it is the user's responsbility to do so. Solution: Made H5Pget_data_transform be more in line with other functions that do similiar things: User now has to allocate memory for the string themselves and specify how much of the string should be copied into the buffer. There is also support for querying the length of the transform string. Platforms tested: sol + eirene + copper Misc. update:
* [svn-r9267] Purpose:Leon Arber2004-09-161-0/+1
| | | | | | | | | | | | | | | | | | | Added H5Pget_data_transform Added support for polynomial data transforms Description: There is now support for polynomial data transforms (ie, (2+x)*(x-5)) instead of just linear ones. Note that, in order to compute a polynomial transform, one temporary copy of the original data must be stored for each occurence of "x" in the transform expression. This can result in very high memory usage for expressions of high order. Platforms tested: sol + eirene Misc. update:
* [svn-r8781] James Laird2004-07-011-2/+12
| | | | | | | | | | | | | | | | Purpose: HDF5 now supports SZIP with no encoder. Description: SZIP can be configured to have both encoder and decoder or just to have the decoder. HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled. Solution: Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id. See SZIP RFC. Platforms tested: Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++) Misc. update:
* [svn-r8482] Purpose:Quincey Koziol2004-05-051-3/+2
| | | | | | | | | | | | Code cleanup Description: Refactored data transform code to reduce amount of symbols in the global scope and also cleaned up & simplified the code a bit. Platforms tested: h5committest (minus copper, plus serial modi4) FreeBSD 4.9 (sleipnir) w & w/o parallel
* [svn-r8479] Purpose:Albert Cheng2004-05-031-0/+2
| | | | | | | | | | | | | New Feature Description: Add the data transform function, H5Pset_transform(). Platforms tested: "h5committested". Copper was down. Ran parallel tests in sol instead. Misc. update:
* [svn-r8426] Purpose: Bug fixRaymond Lu2004-04-281-2/+2
| | | | | | | | | Description: H5Pset_type_conv_cb and H5Pget_type_conv_cb weren't put into H5MPprivate.h. Another thing is the func type doesn't match the func field in the struct in these functions. Platforms tested: RH 8(fuss) and sleipnir
* [svn-r8424] *** empty log message ***Raymond Lu2004-04-271-1/+3
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* [svn-r8149] Pedro Vicente Nunes2004-02-041-1/+1
| | | | | | | | | | | | | | Purpose: replaced name of delete filter with remove filter for the new function H5Premove_filter Description: Solution: Platforms tested: linux Misc. update:
* [svn-r8113] Purpose:Pedro Vicente Nunes2004-01-261-0/+2
| | | | | | | | | | | | | | | | | | | new library function H5Pdelete_filter deletes one or all filters from a dataset creation property list this was done for the NONE option of h5repack, added tests for this feature added a test for the new function in /test/dsets.c Description: Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8038] Purpose:Quincey Koziol2004-01-081-0/+32
| | | | | | | | | | | | | | | | | | | | Bug fix Description: When two property lists are compared, the H5Pequal routine was just comparing the raw information for the property values. This causes problems when the raw information contains pointers to other information. Solution: Allow a 'compare' callback to be registered for properties, so that a user application get perform the comparison itself, allowing for "deep" compares of the property value. This was exported to the H5Pregister & H5Pinsert routines in the development branch, but not the release branch. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7379] Purpose:Quincey Koziol2003-08-181-0/+6
| | | | | | | | | | | | Code cleanup Description: Changed version #'s returned from H5Pget_version from 'int *' to 'unsigned *' since we are never going to be using negative version #'s... :-) Platforms tested: FreeBSD 4.8 (sleipnir) too small to need h5committest
* [svn-r7201] Purpose:Quincey Koziol2003-07-101-0/+7
| | | | | | | | | | | | | Code cleanup Description: Finish converting the B-tree 'K' values to use unsigned integers, rather than signed ones, since negative amounts of entries in a B-tree node aren't meaningful. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7181] Purpose:Quincey Koziol2003-07-071-44/+0
| | | | | | | | | | | Version update Description: Removed 1.4 compatibility code in the library. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6610] Purpose:Quincey Koziol2003-04-091-3/+11
| | | | | | | | | | | | | | | | | | | | | | | | Code cleanup & new features Description: Added three new API functions for working on I/O filters: H5Pmodify_filter, H5Pget_filter_by_id and H5Pall_filters_avail. Documentation on these will be added for the 1.6.0 release, until then, we'll have to use the source code. Also, simplified the H5Pset_szip and H5Pset_shuffle API interfaces, since those filters are using the new "set local" callback facility to set dataset- specific parameters. Probably, some of the changes to internal H5Z routines are captured in these changes also. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6577] Purpose:Quincey Koziol2003-04-031-1/+2
| | | | | | | | | | | | | | | | | | Code cleanup (sorta) Description: The H5Pset_szip API call was forcing users to pass in their parameters in the same way as the internal representation of the filter parameters used by the library (as an array of unsigned values). Solution: Changed to pass in separate parameters in a more user-friendly format. Platforms tested: FreeBSD 4.8 (sleipnir) IRIX64 6.5 (modi4) w/parallel Misc. update:
* [svn-r6559] Purpose:Bill Wendling2003-04-011-11/+13
| | | | | | | | | | | | Update Description: Missed this file when updating copyright statements. Platforms tested: None (comment change) Misc. update:
* [svn-r6551] Purpose:MuQun Yang2003-04-011-13/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | To support szip compression in HDF5 Description: szip compression support is required by NASA ESDIS. The compression algorithm is good for scientific data. In HDF5, we add another filter function to make szip as a default compression package as we did for gzip(or zlib). In this check-in, a new function called H5Pset_szip was added into H5Pdcpl.c, this function is very similar to H5Pset_deflate. The only difference is SZIP needs four parameters from the user to get the compression done while gzip needs only one. So we pass a pointer to this function instead of an integer number. The description of the four parameters of szip should be in different documents. H5Z.c and other header files were simply modified to have HDF5 know szip. Solution: See the decription Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6546] Purpose:Bill Wendling2003-03-311-11/+13
| | | | | | | | | | | | Update Description: Updated copyright statement in files which hadn't been updated yet. Platforms tested: Linux (Only comment change) Misc. update:
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