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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-12/+11
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| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-5/+5
| |\ | | | | | | | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| | * [svn-r29077] Description:Quincey Koziol2016-02-101-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| | * [svn-r29066] - fixing some of the internal usage of dxpls.Mohamad Chaarawi2016-02-081-7/+6
| | | | | | | | | | | | - merge from trunk.
| * | [svn-r29076] Description:Quincey Koziol2016-02-101-7/+6
| |/ | | | | | | | | | | | | | | | | Normalize against the phdf5_metadata_opt branch, in preparation for merging it to trunk. Tested on: MacOSX/64 10.11.3 (amazon) w/serial, parallel, and production builds h5committest forthcoming
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-4/+4
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-54/+73
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-54/+72
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-2/+2
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| * [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-2/+2
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* | [svn-r26724] - merge from trunk & fix conflicts.Mohamad Chaarawi2015-04-031-4/+13
|\ \ | |/ | | | | | | - fix bug in opending an already open named datatype. - fix dynamically loaded VOL plugin support with new changes coming in.
| * [svn-r26373] Fix for HDFFV-7959:Scot Breitenfeld2015-03-051-2/+11
| | | | | | | | | | | | H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly Tested: jam (gnu)
| * [svn-r26302] Description:Quincey Koziol2015-02-251-2/+2
| | | | | | | | | | | | | | | | | | Revise dataspace encode/decode routines to make them work better with future virtual dataset feature. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-46/+26
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-5/+5
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-7/+9
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* | [svn-r25502] merge from trunk.Mohamad Chaarawi2014-07-311-9/+14
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| * [svn-r25496] Description:Quincey Koziol2014-07-301-9/+14
| | | | | | | | | | | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-1/+1
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25476] - fix error output in several places.Mohamad Chaarawi2014-07-231-1/+1
| | | | | | | | | | - uncomment tests to check error output in Makefiles. - fix bug in native implementation of H5Aiterate.
* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-0/+3
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| * [svn-r24998] Description:Quincey Koziol2014-04-091-0/+3
| | | | | | | | | | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* | [svn-r24701] merge from trunk to 24700.Mohamad Chaarawi2014-02-131-3/+10
|\ \ | |/ | | | | fix return type for H5T_committed in H5Tget_create_plist.
| * [svn-r24681] Description:Scot Breitenfeld2014-02-041-3/+10
| | | | | | | | | | | | | | | | | | Fix for HDF5/HDFFV-8620 H5Rget_name with NULL name parameter fails. The name parameter now excepts NULL, in which case the length of then name is returned. Tested: jam (intel and gnu)
* | [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-5/+5
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* | [svn-r24301] merge from trunk.Mohamad Chaarawi2013-10-161-1/+0
|\ \ | |/ | | | | resolve conflicts, etc...
| * [svn-r24255] Description:Quincey Koziol2013-10-041-1/+0
| | | | | | | | | | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* | [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-5/+5
|\ \ | |/ | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| * [svn-r23695] Description:Quincey Koziol2013-05-111-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!) Merge changes from Coverity branch back to trunk: r20684: Fix for coverity bug #1721 which was due to the fix for coverity bug #943. r20685: Use HDstrncpy. --gh r20761: Purpose: Fix valgrind issues Description: Free image_data and data as appropriate in test_image. r20762: Purpose: Fix coverity issue 600 Description: Add check for return value of H5O_close in H5Ocopy. Also cleaned up various warnings. r20763: Purpose: Fix valgrind issues with h5stat Description: Modified h5stat to free "iter" before exit, and free "hand" before exit if parse_command_line exits directly. r20764: fixed coverity issues: 69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80 r20765: Fixed coverity bug 668 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1. I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program. r20766: Fixed coverity bug 667 Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning. No actual integer overflow tests are performed since it's just a test program. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (h5committest upcoming)
* | [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* | [svn-r22809] - bring in plist encode decode changes from trunkMohamad Chaarawi2012-09-251-2/+0
|\ \ | |/ | | | | | | - remove hardocded error comparing tests for now because those will fail - regenerate Makefile.in s due to conflicting versions of autotools
| * [svn-r22750] Removed check-in r22746 because it causes an error in objcopy ↵Scot Breitenfeld2012-09-101-4/+0
| | | | | | | | | | | | on Linew 64 byte. Will check-in again after the issue is resolved.
| * [svn-r22746] Description:Scot Breitenfeld2012-09-091-0/+4
| | | | | | | | | | | | | | | | Fix for HDFFV-7959 H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly. Added fix and test, reviewed: Tested: jam (gnu, intel)
* | [svn-r22623] merge from tunkMohamad Chaarawi2012-08-021-3/+5
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| * [svn-r22608] Description:Quincey Koziol2012-07-261-4/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* | [svn-r22603] set return value in H5RcreateMohamad Chaarawi2012-07-251-2/+2
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* | [svn-r22584] merge from trunk and resolve type ID registrationMohamad Chaarawi2012-07-161-5/+47
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| * [svn-r22582] Description:Quincey Koziol2012-07-161-5/+46
| | | | | | | | | | | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* | [svn-r22565] change OH id registration to original way, and re-register the ↵Mohamad Chaarawi2012-07-121-6/+2
| | | | | | | | | | | | | | | | ID with the VOL info on the upper level (API and iteration/visit routines) - this fixes the bug exposed in H5Oopen with external log plugin update the private VL registration routine to take an app_ref update the datatype ID creation for the VOL to take an app_ref
* | [svn-r22542] update H5I_register_type usage to take a free_aux function callbackMohamad Chaarawi2012-07-101-1/+2
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* | [svn-r22540] fix bug in H5R_get_nameMohamad Chaarawi2012-07-101-1/+1
| | | | | | | | | | | | | | more named datatype bugs: - fix bug in Name replace traversal callback - fix bug in H5G_test A stable version finally..
* | [svn-r22519] - many bug fixesMohamad Chaarawi2012-07-051-0/+7
| | | | | | | | - still some unresolved issues with named datatypes
* | [svn-r22501] change the interface callbacks for the VOL to use objects ↵Mohamad Chaarawi2012-06-281-9/+78
| | | | | | | | | | | | pointers and public VL structure instead of IDs. tests will fail now because of named datatypes.
* | [svn-r22457] rename location types for objects at the VOL levelMohamad Chaarawi2012-06-121-1/+1
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* | [svn-r22456] change all usage of lookup/free VOL callback in H5G,O,A and ↵Mohamad Chaarawi2012-06-121-1/+2
| | | | | | | | | | | | use the loc_param struct instead. update the native implementation
* | [svn-r22452] - remove nrefs paramMohamad Chaarawi2012-06-111-13/+6
| | | | | | | | | | | | | | | | - create a struct to hold parameters for object locations instead of calling into VOL to lookup and free object: * update the implementation for H5Oopen(_by_name/idx/ref) * H5Rderefence * H5Aopen(_by_name), H5Arename(_by_name) * other routines coming later
* | [svn-r22404] split the generic callback into a misc and optional callback ↵Mohamad Chaarawi2012-05-241-1/+1
| | | | | | | | for objects and files
* | [svn-r22399] move location token out of va_list on lookup callbackMohamad Chaarawi2012-05-231-1/+2
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* | [svn-r22389] merge from trunkMohamad Chaarawi2012-05-221-0/+6
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| * [svn-r22371] Fix for HDFFV-7697Dana Robinson2012-05-151-1/+1
| | | | | | | | | | | | Minor change to error message text in H5R.c. Minor change: tested on jam
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