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* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-3/+3
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* Change H5R__copy to not assume destination reference storage is initializedJordan Henderson2020-11-031-2/+4
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* Comment adjustmentsAllen Byrne2020-10-081-1/+0
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* Clang-format of source filesAllen Byrne2020-09-301-331/+294
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* Merge pull request #2739 in HDFFV/hdf5 from namespace_cleanup_01 to developQuincey Koziol2020-08-141-193/+0
|\ | | | | | | | | | | | | | | * commit '3f46a380e084d83a84783383bdfbbd9a443e9f27': Correct typos w/HGOTO_DONE & HGOTO_ERROR Move H5T_vlen_reclaim to package scope Switch H5VM inline routines back to single underscope and put a comment in their header about this naming Clean up private / package / static namespace issues (function naming, which header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
| * Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-193/+0
| | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* | Fixes a size mismatch when copying old-style to new-style referencesDana Robinson2020-08-121-1/+1
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* H5R: fix encoding of references that are part of compound typesJerome Soumagne2020-07-281-1/+1
| | | | Add corresponding test and some debug information
* H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-161-0/+8
| | | | Update trefer.c with vlen test case
* Fix issues when deserializing point/all/none selection with version beyond ↵Vailin Choi2020-03-131-1/+7
| | | | | | | the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace
* squash cast warning fixkmu2020-01-231-1/+2
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-147/+179
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* H5R: set app ref when incrementing ref_count on location held by referenceJerome Soumagne2020-01-101-10/+29
| | | | (fix HDFFV-10992)
* Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings ↵Kimmy Mu2020-01-061-1/+1
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '0a2bb11b248df6841daabca3970df5d8504adfc7': address problems from comments fix and address comments change according to previous comments add missing piece remove unnecessary check macro fix intel compile warnings Revert "fix warnings from Intel compiler" Revert "fix warnings and some text alignment" Revert "let hdf5 pick up the right compiler in Intel environment" Revert "fix issues from previous PR comments" Revert "using a different MACRO" using a different MACRO fix issues from previous PR comments let hdf5 pick up the right compiler in Intel environment fix warnings and some text alignment fix warnings from Intel compiler
| * Merge branch 'develop' into bugfix/intel_warningskmu2019-12-091-15/+16
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| * | remove unnecessary check macrokmu2019-12-061-1/+1
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| * | fix intel compile warningskmu2019-12-041-1/+1
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| * | Quiet decleration-after-statement warnings.David Young2019-11-131-1/+1
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* | | Small changes from the token_refactoring branch, to reduce the delta to developQuincey Koziol2020-01-041-10/+10
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* | | Cleanups from PR reviewsQuincey Koziol2019-12-201-8/+8
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* | | Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-31/+62
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* | | Fix 2010 compile issuesAllen Byrne2019-12-111-37/+37
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* | Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t *Jerome Soumagne2019-12-051-10/+10
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* | Merge pull request #2059 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_nullref to ↵Jerome Soumagne2019-11-281-1/+2
|\ \ | | | | | | | | | | | | | | | | | | develop * commit '6b68cc352ffabb5fe997db1eb52216b3ee80e669': H5R: fix H5Tconv to check for null references
| * | H5R: fix H5Tconv to check for null referencesJerome Soumagne2019-11-261-1/+2
| |/ | | | | | | | | | | Valid for both deprecated and non-deprecated references Update test
* | Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-11-271-3/+3
|/ | | | Remove H5F__get_file_id() and use only private routine instead
* Fix issue where H5R__reopen_file did not make the file "post open"Neil Fortner2019-11-121-0/+9
| | | | callback.
* Fix encode and decode of tokens in H5VLnativeJerome Soumagne2019-10-111-52/+67
| | | | | | | | Fix encode and decode of deprecated object reference addresses Make H5Rdeprec.c use tokens instead of haddr_t Fix H5Oopen_by_addr() to serialize addr to token
* Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-442/+1414
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
* Added the map (H5M) APIDana Robinson2019-08-131-0/+3
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* Warning fixes:Dana Robinson2019-06-281-2/+1
| | | | | | * fix for static/const flipped in H5Dint.c * Removed missing done target in H5Rint.c * Fixed misleading indentation in h5format_convert.c
* Warning cleanupQuincey Koziol2019-04-251-0/+1
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* HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-0/+3
| | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* Removed H5I_REFERENCE from the library. It has always been unusedDana Robinson2018-12-081-32/+6
| | | | and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
* Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-2/+2
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* Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-11/+3
| | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-2/+1
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* Normalization with vol_integration (misc internal and datatype)Dana Robinson2018-09-201-9/+7
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* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-181-10/+10
| | | | orginally intended to support the full SWMR feature.
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-2/+2
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-141-2/+2
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| * Normalization with the vol_integration branch.Dana Robinson2018-06-061-2/+2
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-041-9/+8
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| * Normalize with vol_integration.Dana Robinson2018-05-291-9/+8
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-70/+72
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| * Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-70/+72
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* | Resolve conflicts from previous merge.Vailin Choi2017-12-051-2/+2
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* Split internal H5R functionality into H5Rint.c.Dana Robinson2017-11-081-0/+767
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