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* - Added H5MMprivate.h #includes where neededDana Robinson2019-03-161-0/+1
| | | | | - Added casts to quiet H5MM_memcpy warnings - Removed char * casts from HDmemcpy
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-1/+1
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r28742] Description:Quincey Koziol2015-12-291-43/+1
| | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28422] Description:Quincey Koziol2015-11-201-28/+71
| | | | | | | | | | Revert most of r27549, since revise_chunks code requires debugging contexts for v2 B-trees. Also, misc. warning cleanups and alignments w/changes on revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27768] Description:Quincey Koziol2015-09-141-3/+3
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27549] Description:Quincey Koziol2015-08-221-47/+4
| | | | | | | | | | Update the file format debugging routines to match the recent changes to the metadata cache, along with a few other cleanups and miscellaneous enhancements. Tested on: MacOSX/64 10.10.5 (amazon) (h5committest forthcoming)
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-3/+3
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r22170] Removed extraneous svn executable properties from ↵Dana Robinson2012-03-281-0/+0
| | | | non-executable files.
* [svn-r21919] Description:Quincey Koziol2012-02-091-6/+6
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r19396] Description:Quincey Koziol2010-09-161-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | Bring back various modifications to the v2 B-trees that were introduced in the revise_chunks branch but aren't dependent on any file format or API changes. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r17943] Description:Quincey Koziol2009-12-011-197/+111
| | | | | | | | | | | | | | | | | | | | | | Finish refactoring v2 B-trees so that they can have client callback context provided to the encode/decode callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17891] Description:Quincey Koziol2009-11-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | Switch the shared object header messages code to use the refactored v2 B-tree routines. (this should be the interface that is using them) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17740] Description:Quincey Koziol2009-10-241-0/+1
| | | | | | | | | | | | | | | | | | | | | | | Refactor v2 B-tree code to take creation parameters to H5B2_create() as a struct (instead of individual arguments), call the client's class "cls" instead of "type" internally, and add client class name to client class struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17429] Description:Quincey Koziol2009-08-271-30/+0
| | | | | | | | | | | | | | | | | | | | | | Bring work from "compress group's fractal heap" branch back to trunk: reove unnecessary v2 B-tree 'retrieve' callback from v2 B-tree clients. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r13915] Description:Quincey Koziol2007-06-261-4/+3
| | | | | | | | | Clean up SOHM code, to copy message in H5HF_op call instead of separate calls to H5HF_get_obj_len() and H5HF_read(). Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago)
* [svn-r13796] Description:Quincey Koziol2007-05-231-24/+23
| | | | | | | | | Clean up ISOHM code further and get rid of several non-optimal ways of working with object headers. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13753] Description:Quincey Koziol2007-05-141-135/+157
| | | | | | | | | | | | | Check in "unique, but sharable" optimization to ISOHM code, which allows object header messages that are only used in one object to remain in the sole user's header, but migrates messages that are used in more than one header into the ISOHM heap. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13340] Fixed a bug where shared messages with the same hash values ↵James Laird2007-02-201-29/+14
| | | | | | | | | | could be sorted in the wrong order. This also makes the "unique but shareable" checkin a little easier. Tested on smirom, kagiso, and juniper.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13224] Fixed a bug where messages would report their "raw size" as the ↵James Laird2007-01-301-3/+16
| | | | | | | | | | | | | | size of a shared message rather than the full size of the unshared message, which confused some shared message code. Added a test that should make sure that some messages are too small to be written to the deletion test in tsohm.c. Also added a small optimization so that hash values don't need to be calculated on deletes in list indexes. Tested on Windows, smirom, and kagiso.
* [svn-r13159] Added h5debug support for shared message structures.James Laird2007-01-191-1/+1
| | | | | Tests run on juniper, kagiso, smirom. h5debug run manually on sample files on Windows, juniper, and kagiso.
* [svn-r13155] Description:Quincey Koziol2007-01-191-15/+16
| | | | | | | | | | | | | | Add "set_crt_index" and "get_crt_index" methods for the object header message class. Unify fractal heap definitions for shared messages and attributes, under "object header" fractal heap definitions. Initial code for adding creation order index to object header messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13143] Refactoring.James Laird2007-01-161-2/+1
| | | | | | | | | | | | | | Added can_share callback for OH messages. This determines whether the message is allowed to be shared in the heap (committed and immutable datatypes can't be). Fixed a bug in the dense attribute storage that tried to open the shared message heap when it hadn't been created yet. Made the test to extend shared dataspace messages a bit more robust. Refactored the code the searches a shared message list index to be a little more efficient. A few other minor changes. Tested on smirom, kagiso, Windows, and juniper.
* [svn-r13135] Continuing code cleanup.James Laird2007-01-111-59/+0
| | | | | | | | | Moved SOHM table version out of table encoding and completely into superblock. This is a file format change. Added test that extends shared dataspaces. Dynamically allocate arrays in shared message cache code. Clean up comments. Tested on windows, kagiso, smirom.
* [svn-r13127] Refactoring. Cleaned up some buggy code when searching for ↵James Laird2007-01-091-6/+8
| | | | | | | | messages in B-trees. Tested on Windows, smirom, and kagiso.
* [svn-r13126] More cleanup. Shared messages now use in-heap callbacks when ↵James Laird2007-01-091-37/+83
| | | | | | | | searching for a matching message, which should improve performance. Tested on Windows, kagiso, and smirom.
* [svn-r13113] Refactoring. Cleaned up code, added a few sanity checks.James Laird2007-01-051-2/+9
| | | | | | Extracted duplicated code into functions. Tested on Windows, juniper, and kagiso. Will test on copper next.
* [svn-r13079] Description:Quincey Koziol2006-12-191-15/+11
| | | | | | | | | | | | | | | | | | Add more tests for checking that writing to shared attributes works correctly. (Looks like it still has a bug when dense storage is used, which I'll correct shortly). Add testing routine to shared message code, to retrieve reference count for a shared message. Add fractal heap 'op' callback for efficiently computing the hash value of an existing encoded message in the shared message fractal heap. Various minor cleanups and warning placations. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13010] Cleaned up warnings in H5SM* files.James Laird2006-12-021-16/+18
| | | | Cleaned up all warnings on kagiso. Tested on kagiso and copper.
* [svn-r13004] Much improved shared object header message test, along with ↵James Laird2006-12-011-8/+14
| | | | | | | | | | | some bug fixes to make the test pass. These changes involve changes to the file format of SOHMs, but that's okay because nobody should have been using SOHMs yet anyway. Tested on Windows, kagiso, copper, and heping
* [svn-r12935] Added list-to-btree conversion, changed SOHM apis, and pushed ↵James Laird2006-11-171-2/+47
| | | | | | | | | | | SOHM table version and size information into the superblock to eliminate a read when loading it. This is a file format change, and hopefully the last one (knock on wood). Tested on kagiso and Windows (mostly just a SOHM change).
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-0/+351
This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
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