| Commit message (Collapse) | Author | Age | Files | Lines |
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Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Require semi-colon after H5_CHECK_OVERFLOW calls
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
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* Change HDassert to assert
* Fix bin/make_err
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* Prevent buffer overrun in H5S_select_deserialize
The call to H5S_select_deserialize from H5S_decode doesn't have
the buffer size available to it, so to allow decoding there
I set it to assume a max size buffer for now.
Making the buffer size known in H5S_decode could be done by
modifying the external API's H5Sdecode, or splitting H5Sdecode
into two functions using a macro (similar to H5Sencode), with the
macro taking one argument and assuming a max buffer size.
* Conditional buffer check in H5S_select_deserialize
Moved and renamed a macro for only checking buffer overflow when
buffer size is known from H5Odtype.c to H5private.h,
so it can be used throughout the library.
Also silenced some build warnings about types.
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* reviewed H5A
* Addressed various grammar issues.
* remove double words, spelling fixes
* replace the use of rawdata with raw data
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* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
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* Update format source to clang 13
* More format changes
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* Removes the STATIC flavor of FUNC_ENTER macros
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Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
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* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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the library's supported version:
(1) Verify the decoded version before proceeding further with deserialization
(2) Close the dataspace if errors occurred after opening the dataspace
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H5Sselect_adjust. Implement "adjust_s" callback for all selection
types. Add range checking to H5Sselect_adjust().
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with tests and minor cleanups and refactorings.
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This also addresses HDFFV-10255: H5Sencode/decode performance issue.
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the H5Sencode changes.
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing
changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
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merge_hyperslab_updates
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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improvements.
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Modifications to fix H5Sencode bug when num points selected is > 2^32.
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and replace it with new url for COPYING file.
Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
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H5S recursive functions where an aliased pointer was
incorrectly set too early.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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Revert changes to 'all' and 'none' selections: the serialized header info
is handled in the general H5S_select_deserialize() routine.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Advance the decoding pointer for 'all' and 'none' selections properly.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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changes will be merged more carefully so we can more easily
identify any errors that arise.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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Merge changes from trunk to the branch.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Update dataspace selection encode/decode routines to avoid type aliasing
errors.
Tested on:
Linux/64 2.6.x (platypus) w/production
(h5committest forthcoming)
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Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Revert changes to pass file pointer to selection serialize/deserialize
routines. Also patch back in some changes that were merged out in the
previous merge w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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selections, incorrect
numbers of elements selected, incorrect "slice" through limited dimensions,
incorrect number of printf substitutions.
Patch source selection space extent with bounds of selection if extent is
unknown before returning via H5Pget_virtual_srcspace.
Write updated VDS dataspace to file when it changes due to unlimited selections.
Other minor fixes/cleanup.
Tested: ummon
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Other comments.
Add some input checking.
Tested: ummon
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Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
(C++ and Fortran 2003 also tested)
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* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
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Not tested (except for percival-unlim example)
Fix percival-unlim example
Other bug fixes/cleanup
Tested: Fedora 64
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Other minor fixes
Tested: jam
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VDS code yet).
Add tests for unlimited selections.
Various other minor changes.
Tested: ummon
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