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* [svn-r14386] Bug fix for #956. The calculation of the coordinates for ↵Raymond Lu2008-01-091-12/+54
| | | | | | | | | | dataspace selection went wrong when the selection of some dimensions are full and these dimensions are optimized through "flattenning". The calculation of the coordinates wasn't general enough in H5Shyper.c. Also added a test program for it. Tested on smirom only because the same code was tested on 3 platforms for v1.8.
* [svn-r13316] Updated Copyright notices.Albert Cheng2007-02-141-2/+3
| | | | Tested platform: Kagiso (serial, pp)
* [svn-r11246] Purpose:Quincey Koziol2005-08-131-29/+29
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10960] Purpose:Quincey Koziol2005-06-201-2/+2
| | | | | | | | | | | Bug fix Description: Don't perform hyperslab operations on non-hyperslab selections. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10952] Purpose:Quincey Koziol2005-06-181-15/+63
| | | | | | | | | | | | | | | | | Bug fix Description: Hyperslab selections that had a selection offset and were applied to a chunked dataset could get into an infinite loop or core dump if the same selection was used multiple times, with different selection offsets. Solution: "Normalize" the selection with the selection offset, generate the selections for the chunks overlapped and then "denormalize" the selection. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10845] Purpose:Quincey Koziol2005-06-021-24/+19
| | | | | | | | | | | | | Code cleanup Description: Simplify the "zero-sized hyperslab" handling. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest Misc. update:
* [svn-r10833] Purpose:Quincey Koziol2005-05-311-12/+62
| | | | | | | | | | | | | | | | | Bug fix Description: Fix problems with hyperslab operations with hyperslabs that have count == 0 or block == 0 values. (bugzilla #294) Solution: Detect zero sized selections and translate into appropriate action on the current hyperslab, rather than go through the formality of generating span trees with zero-sized spans, etc. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r10579] Purpose:Quincey Koziol2005-04-081-31/+43
| | | | | | | | | | | | Code optimization Description: Reduce overhead for common case of stride==NULL and block==NULL for H5Sselect_hyperslab() calls. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r9852] Purpose: MaintenanceElena Pourmal2005-01-201-3/+0
| | | | | | | | | | Description: Removed PABLO instrumentation from HDF5 source Solution: Platforms tested: arabica, copper (parallel), mir Misc. update:
* [svn-r9729] Purpose:Quincey Koziol2004-12-291-153/+240
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9656] Purpose:Quincey Koziol2004-12-121-0/+3
| | | | | | | | | | | Bug fix Description: Propogate Kent's fix to the hyperslab "add elements" routine back to the release branch. Platforms tested: None - eyeballed only, very minor
* [svn-r9557] Purpose:Quincey Koziol2004-11-221-3/+3
| | | | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Improve ADF/CGNS benchmark by reducing the number of internal attribute copies made during creations, opens and writes. Added new H5O_iterate() routine for iterating through messages of a certain type in the object header (attributes are the only message currently that can have multiple instances in the object header). Cross-pollinated various minor code cleanups to reduce diffs between branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r8989] Purpose:Quincey Koziol2004-08-021-42/+20
| | | | | | | | | | | | | | Backport feature Description: Backport Kent's collective chunk I/O work to date into the release branch. Also, minor code cleanups, etc. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IRIX64 6.5 (modi4) h5committested
* [svn-r8783] Purpose:Quincey Koziol2004-07-011-5/+5
| | | | | | | | | | | Code cleanup Description: Clean up almost all warnings from Windows builds. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8733] Purpose:Quincey Koziol2004-06-231-2/+1
| | | | | | | | | | | | Code cleanup Description: Reduce compiler warnings on SGI IRIX Platforms tested: FreeBSD 4.10 (sleipnir) SGI IRIX6 (Cheryl's machine) Too minor to require full h5committest
* [svn-r8691] Purpose:Quincey Koziol2004-06-151-4/+16
| | | | | | | | | | | | Code optimization Description: Be smarter about copying hyperslab selection data and avoid memcpy() calls. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8678] Purpose:Quincey Koziol2004-06-141-47/+47
| | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Remove old structures that used a union to store information about the dataspace extent and just store the information directly in the dataspace extent itself. Remove ifdef'd references to permutation ordering in dataspaces. We'll definitely need more than this code if/when we implement this feature. Change allocation of dataspace information from calloc() to malloc(). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8674] Purpose:Quincey Koziol2004-06-131-156/+194
| | | | | | | | | | | | | | | | | | Code optimization Description: Revised dataspace selections to use a more "object oriented" mechanism to set the function pointers for each selection and selection iterator. This reduces the amount and number of times that dataspace selection info has to be copied. Additionally, change hyperslab selection information to be dynamically allocated instead of an inline struct. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8543] Purpose:Quincey Koziol2004-05-201-39/+2
| | | | | | | | | | | | | | Code optimization Description: Expand the use of macros to inline trivial function pointer lookup and calls to reduce the overall number of functions invoked during normal operation of the library. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8519] Purpose:Quincey Koziol2004-05-131-16/+13
| | | | | | | | | | | | Code optimization Description: Don't make a separate allocation for the selection offset - incorporate it into the selection structure as a fixed size array. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8512] Purpose:Quincey Koziol2004-05-131-6/+66
| | | | | | | | | | | | Code optimization Description: Defer creating the span trees for hyperslab selections until they are actually needed (which may be never, in certain circumstances). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8497] Purpose:Quincey Koziol2004-05-081-3/+14
| | | | | | | | | | | | | Code optimization Description: Further reduce the number of copies we make of a hyperslab selection for chunked I/O, especially when we are only going to throw the old selection away for a new one. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8459] Purpose:Quincey Koziol2004-05-011-21/+19
| | | | | | | | | | | | | | | Code optimization Description: Move the element size for the selection into the selection iterator instead of always passing it as a parameter. Also, eleminate another 64-bit multiply for "all" selections. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8458] Purpose:Quincey Koziol2004-05-011-141/+73
| | | | | | | | | | | | | Code optimization Description: Stop straddling the line and always use elements instead of bytes to determine how how I/O to perform on a selection. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8453] Purpose:Quincey Koziol2004-05-011-70/+46
| | | | | | | | | | | | Code optimization Description: Eliminate more redundant 64-bit multiplies Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8451] Purpose:Quincey Koziol2004-05-011-10/+6
| | | | | | | | | | | | Code optimization Description: Eliminate frivolous 64-bit multiply. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8449] Purpose:Quincey Koziol2004-05-011-4/+3
| | | | | | | | | | | | Code optimization Description: Remove extraneous memcpy() Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8417] Purpose:Quincey Koziol2004-04-241-856/+0
| | | | | | | | | | | | | | | Code cleanup Description: Remove "NEW_HYPERSLAB_API" code from release branch, since it was leftover from when we branched the 1.6 branch from the main development trunk and will never be activated in the 1.6 branch. (And I'm tired of maintaining it in both branches when I'm optimizing the library :-) Platforms tested: FreeBSD 4.9 (sleipnir) Linux 2.4 (verbena) w/FORTRAN too minor to require full h5committest
* [svn-r8409] Purpose:Quincey Koziol2004-04-221-235/+84
| | | | | | | | | | | | | | Code optimization Description: Instead of dynamicly allocating various arrays for various pieces of information about a selection or selection iterator, just use fixed size array of size H5S_MAX_RANK (as the rest of the library does). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) h5committest
* [svn-r8373] Purpose:Quincey Koziol2004-04-171-27/+29
| | | | | | | | | | | | | | Code optimization Description: Instead of re-initializing the default stride & block arrays to have values of '1' in each position each time we perform a hyperslab selection, create static constant arrays with '1's in them. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8371] Purpose:Quincey Koziol2004-04-171-10/+28
| | | | | | | | | | | | Code optimization Description: Don't copy hyperslab span information as much. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8340] Purpose:Quincey Koziol2004-04-101-8/+8
| | | | | | | | | | | | | Code optimization Description: Remove a memcpy() from a commonly called routine and replace a multiplication with a series of additions. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8338] Purpose:Quincey Koziol2004-04-101-13/+17
| | | | | | | | | | | | Code optimization Description: Avoid another extraneous dataspace copy. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8336] Purpose:Quincey Koziol2004-04-101-0/+122
| | | | | | | | | | | | | | | Code optimization Description: Change algorithm to directly use coordinates describing a chunk's position in a dataspace instead of creating a dataspace with the chunk's position selected. This reduces the number of copies of dataspaces we need to keep around. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8325] Purpose:Quincey Koziol2004-04-081-1/+1
| | | | Correct typo in comment
* [svn-r8313] Purpose:Quincey Koziol2004-04-061-12/+2
| | | | | | | | | | | | Code optimization Description: Eliminate unnecessary allocation and point at existing data structure instead. Platforms tested: Solaris 2.7 (arabica) too minor to require h5committest
* [svn-r8310] Purpose:Quincey Koziol2004-04-061-12/+2
| | | | | | | | | | | | Code optimization Description: Fix H5S_select_hyperslab to use arrays on the stack instead of dynamically allocating them each time. Platforms tested: Solaris 2.7 (arabica) too small to require h5committest
* [svn-r8306] Purpose:Quincey Koziol2004-04-061-11/+8
| | | | | | | | | | | | Code optimization Description: Minor tweaks on the optimized offset/length sequence generator to improve performance by reducing the number of 64-bit multiplies and calls to memcpy(). Platforms tested: Solaris 2.7 (arabica) too minor to require h5committest
* [svn-r8001] Purpose:Quincey Koziol2003-12-311-15/+60
| | | | | | | | | | | | | Bug fix Description: Fixed bug in hyperslab iteration where certain combinations of flattened and non-flattened dimensions would cause incorrect locations to be iterated over. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7944] Purpose:Quincey Koziol2003-12-131-7/+65
| | | | | | | | | | | | | | | Bug fix. Description: Using a selection offset with hyperslab selections in chunked datasets was getting into an infinite loop and hanging the application. Solution: Apply the selection offset to the hyperslab selection properly. Platforms tested: FreeBSD 4.9 (sleipnir) w & w/o parallel h5committest
* [svn-r7918] Purpose:Quincey Koziol2003-12-061-51/+51
| | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up compiler warnings, especially the 'FUNC' variable not used which comes out in production mode. Solution: Had to add a new FUNC_ENTER_NOAPI_NOINIT_NOFUNC macro for those non-API functions which don't need the 'FUNC' variable defined. (This will be _so_ much easier when C99 is standard on all our supposed platforms, since it has a __FUNC__ macro... ) Platforms tested: FreeBSD 4.9 (sleipnir) too minor for h5committest (although there were lots of files changed, the change was minor in each one)
* [svn-r7735] Purpose:Quincey Koziol2003-10-251-30/+44
| | | | | | | | | | | | | | | | | Bug fix Description: Single hyperslab selections (which were set with only one call to H5Sselect_hyperslab) that had dimensions that could be "flattened" but were interspersed with dimensions that could not be flattened were not correctly handled, causing core dumps. Solution: Re-work "flattening" code to handle this case properly. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7116] Purpose:Quincey Koziol2003-06-271-3/+4
| | | | | | | | | | | | Update code Description: Move "PABLO_MASK" definition above header file inclusion to avoid problems with inline functions in header files. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r6969] Purpose:Quincey Koziol2003-06-051-3/+3
| | | | | | | | | | | Code cleanup Description: Correct a couple of mistakes in error macros. Platforms tested: FreeBSD 4.8 (sleipnir) triple check not necesssary.
* [svn-r6961] Purpose:Quincey Koziol2003-06-041-34/+73
| | | | | | | | | | | | | | | | Bug fix Description: An earlier checkin changed some of the assumptions about single block hyperslabs, causing them to fail in odd ways. Solution: Fix errors with single block hyperslabs by keying off of count==1 instead of stride==1. Platforms tested: FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6957] Purpose:Quincey Koziol2003-06-041-44/+557
| | | | | | | | | | | | | | | | Code cleanup & performance improvements Description: Optimize hyperslabs that are built to detect situations where "regular" hyperslabs can be recovered from span tree descriptions. Also, improve "same shape" routine to correctly work with all the different combinations of selections. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6942] Purpose:Quincey Koziol2003-05-311-9/+443
| | | | | | | | | | | | | | | | | Performance improment Description: Speed up chunked dataset I/O. This breaks down into several areas: - Compute chunk selections in the file by using hyperslab operations instead of iterating over each element in the selection. - If the file and memory selections are the same shape, use the file chunk selections to compute the memory chunk selections. This required several additional dataspace, dataspace selection and hyperslab routines. Platforms tested: h5committestted (although Fortran tests failed for some reason)
* [svn-r6920] Purpose:Quincey Koziol2003-05-281-3/+3
| | | | | | | | | | | | | | | | Bug fix Description: (void *)~((size_t)NULL) on the Cray is a different value than (foo *)~((size_t)NULL) and causes some of the hyperslab algorithms to fail. Solution: Change all the 'void *' forms to 'foo *' forms. Platforms tested: Cray SV1 h5committest not needed.
* [svn-r6839] Purpose: feature protectionRaymond Lu2003-05-081-0/+2
| | | | | | | | | Description: H5Sselect_hyperslab and H5Sselect_elements didn't check scalar dataspaces. Solution: put error detection in those functions. Platforms tested: eirene(simple change).
* [svn-r6837] Purpose:Quincey Koziol2003-05-081-1/+5
| | | | | | | | | | | | | | | Code cleanup. Description: Move many package or internal function prototypes and macro definitions into tighter scope according to their current use. Added more comments where appropriate. Eliminate ancient, unused functions. Added a couple "accessor" functions to get parts of data structures which were moved out of scope. Platforms tested: h5committested
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