| Commit message (Collapse) | Author | Age | Files | Lines |
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----------------------
./src/H5.c
./src/H5A.c
./src/H5AC.c
./src/H5B.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gstab.c
./src/H5HG.c
./src/H5HL.c
./src/H5I.c
./src/H5Iprivate.h
./src/H5MF.c
./src/H5MM.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Smpio.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sselect.c
./src/H5T.c
./src/H5TB.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5detect.c
./src/H5private.h
Most of these changes are because the `interface_initialize_g'
variable change from hbool_t to int. It's a one line change.
Changed the way the library is closed so we have more control
over the order the interfaces are shut down. Instead of
registering an atexit() function for every interface in some
haphazard order we just register one: H5_term_library() which
then calls the H5*_term_interface() functions in a
well-defined order.
If the library is closed and then reopened repeatedly by
calling H5close() and H5open() in a loop we only add one copy
of the library termination functions with atexit().
Termination is a two-step process in order to help detect
programming errors that would cause an infinite loop caused by
the termination of one interface waking up some other
previously terminated interface. The first step terminates
the interface and *marks it as unusable*. After all
interfaces are terminated then we mark them all as usable
again. The FUNC_ENTER() macro has been modified to return
failure or to dump core (depending on whether NDEBUG is
defined) if we try to call an interface while it's shutting
down.
./src/H5.c
The H5dont_atexit() function returns failure if it's called
more than once or if it's called too late. However, the error
stack is not automatically printed on failure because the
library might not be initialized yet
./test/chunk.c
./test/flush1.c
./test/flush2.c
./test/iopipe.c
./test/overhead.c
./test/ragged.c
Changed the extra cast for Win32 so we do floating point
division again -- it was just confusion about precedence and
associativity of casting and the C coercion rules. Removed
extra carriage returns inserted by broken operating system.
./src/H5Ffamily.c
Fixed an bug where H5F_fam_write() lowered the EOF marker for
one of the family members causing H5F_fam_read() to read
zeros.
./test/h5test.h [NEW]
./test/h5test.c [NEW]
./test/Makefile.in
./test/bittests.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
Support library for test files. This isn't done yet but
Katie's contractions are ~10 minutes apart so I figured I
better back this stuff up just in case I'm not here next
week...
Eventually all test files will understand HDF5_DRIVER to name
the low level file driver and parameters so we can easily test
various drivers. They will also understand HDF5_PREFIX to
prepend to the beginning of file names which is necessary for
testing ROMIO with various drivers. Also, the cleanup function
will know how to use the file name prefix and will understand
different file driver naming schemes like file families. I'm
not sure they'll understand the `gsf:' type prefixes yet.
Note, the external test is completely commented out because
I'm in the middle of modifying it. It will still compile and
run but it doesn't test anything at the moment.
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----------------------
./INSTALL.parallel [NEW]
We're beginning to unify some of the parallel installation
steps. This file will contain general information for
installing the parallel library. It's not complete yet.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Check for xdr_int() in libnsl required on Solaris when linking
with hdf4. It's found on the Irix system I tested which
complains that `-lnsl' didn't resolve any symbols. Oh well.
Fixed the order of searching for libdf and libmfhdf for hdf4
linking.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5Z.c
Check for compress() in libz in order to find older versions
of the library that will still work for hdf4. Added a
separate check for compress2() that hdf5 will use.
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./src/H5.c
./src/H5private.h
./src/H5A.c
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5Gpkg.h
./src/H5Gprivate.h
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
./src/H5Oattr.c
./src/H5Ocomp.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Ofill.c
./src/H5Olayout.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5R.c
./src/H5RA.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Snone.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Sselect.c
./src/H5T.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./test/bittests.c
./test/gheap.c
./test/hyperslab.c
./test/istore.c
./test/tmeta.c
./test/trefer.c
./test/tselect.c
./tools/h5debug.c
./tools/h5tols.c
Added checks for Posix.1g types like `int8_t'. If not defined
then H5private.h defines them. Changed all `int8' etc. to
`int8_t'.
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5G.c
./src/H5I.c
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
Calling H5*_term_interface() resets interface_initialize_g to
FALSE so a subsequent call to H5open() (implied or explicit)
reinitializes global variables properly.
./src/H5private.h
./src/H5Oefl.c
./src/H5S.c
Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to
SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they
match the Posix.1 constants in <limits.h>.
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tprivate.h
./src/H5detect.c
Added 36 more integer hardware conversion functions to the
type conversion table for conversions to/from `long long' and
`unsigned long long'. The `long long' names will be changed
shortly to make them portable to Win32.
Changed H5T_init() to H5T_native_open() and added an
H5T_native_close() to open and close the predefined native
data types.
Increased the initial size of the type conversion table from
64 to 128 entries.
Reordered the 90 new integer conversion functions so the names
that are printed favor `int' over `short' or `long' when two
of them are the same.
./test/dtypes.c
Added hardware and software integer conversion tests for the
56 functions I added recently but not the additional 36
checked in this time. That will come next.
Call H5close() after each test so type conversion statistics
are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes
Added more debugging output for when things go wrong.
./src/H5private.h
Removed trailing carriage-returns inserted by broken operating
system ;-)
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Plugged a memory leak in the union of hyperslabs code.
Checkpointing dataset region references, which are working, but not stored in
file yet.
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TRUE/FALSE/FAIL, hbool_t is now strictly for true boolean values.
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"non-negative/negative"
and also fixed a few more explicit checks against FAIL.
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----------------------
./MANIFEST
./test/Makefile.in
./test/flush1.c [NEW]
./test/flush2.c [NEW]
Test to see if calling H5Fflush() results in a consistent
file.
./src/H5.c
./src/H5A.c
./src/H5D.c
./src/H5Fistore.c
./src/H5I.c
./src/H5S.c
./src/H5Shyper.c
./src/H5Sselect.c
./src/H5TB.c
Changed comparisons against SUCCEED and FAIL to >=0 and <0 in
about 15 places.
./src/H5.c
./src/H5V.c
./src/H5detect.c
./src/H5private.h
./src/H5public.h
./test/big.c
./test/chunk.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/external.c
./test/fillval.c
./test/iopipe.c
./test/links.c
./test/mount.c
./test/mtime.c
./test/ragged.c
./test/shtype.c
./test/unlink.c
Removed ^M from the end of lines inserted on broken OS's ;-)
./src/H5private.h
Changed c++ comments to c comments.
./src/H5R.c
Added tracing macros.
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align with the
library.
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Changes since 19980930
----------------------
./MANIFEST
./doc/html/H5.format.html
./src/H5D.c
./src/H5Dprivate.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5O.c
./src/H5Ofill.c [NEW]
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/Makefile.in
Added fill values as documented in previous e-mails. They only
work for chunked datasets so far.
./src/H5E.c
./src/H5Epublic.h
./src/H5P.c
Changed H5E_TEMPLATE to H5E_PLIST.
./src/H5Omtime.c
./src/H5V.c
Fixed a typo in a comment.
./src/H5Tconv.c
Fixed a bug in compound type conversions that caused an
assertion to fail.
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----------------------
./MANIFEST
Changed freebsd2.2.1 to freebsd2.2.7 to match change in file name.
Added a few missing files. Are all of these supposed to be
distributed?
./tools/testfiles/h5dumptst.c
+ ./tools/testfiles/tall-1.ddl
+ ./tools/testfiles/tall-2.ddl
+ ./tools/testfiles/tall-3.ddl
./tools/testfiles/tall.ddl
./tools/testfiles/tall.h5
+ ./tools/testfiles/tattr-1.ddl
+ ./tools/testfiles/tattr-2.ddl
+ ./tools/testfiles/tattr-3.ddl
+ ./tools/testfiles/tattr-4.ddl
./tools/testfiles/tattr.ddl
./tools/testfiles/tattr.h5
+ ./tools/testfiles/tdset-1.ddl
+ ./tools/testfiles/tdset-2.ddl
+ ./tools/testfiles/tdset-3.ddl
+ ./tools/testfiles/tdset-4.ddl
./tools/testfiles/tdset.ddl
./tools/testfiles/tdset.h5
+ ./tools/testfiles/tgroup-1.ddl
+ ./tools/testfiles/tgroup-2.ddl
+ ./tools/testfiles/tgroup-3.ddl
./tools/testfiles/tgroup.ddl
./tools/testfiles/tgroup.h5
+ ./tools/testfiles/tslink-1.ddl
+ ./tools/testfiles/tslink-2.ddl
./tools/testfiles/tslink.ddl
./tools/testfiles/tslink.h5
./src/H5B.c
./src/H5Bprivate.h
./src/H5D.c
./src/H5Dprivate.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5Gstab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
./test/istore.c
Implemented split ratios as documented in previous
e-mails. Frank, the new API functions are H5Pget_btree_ratios()
and H5Pset_btree_ratios().
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
Added more type checking for the data transfer property list
passed to these functions.
./src/H5D.c
Added a dataset transfer property list as an argument to
H5D_allocate() for the parallel version in order to pass split
ratios down to H5F_istore_lock(). Eventually we won't need
the split ratios for H5D_allocate() because we'll build a
completely full B-tree from the leaves up, but it might be
useful to have other transfer properties at that level
anyway. I always caled H5D_allocate() with &H5D_dflt_xfer.
./MANIFEST
./test/Makefile.in
./test/overhead.c [NEW]
Added an `overhead' test run by `make timings'.
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operation to
H5Sselect_hyperslab.
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which were
calling malloc too often. Also, added caching of hyperslab blocks, which
improves performance _significantly_ for hyperslab I/O.
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----------------------
./COPYING
Reformatted as text instead of C. Removed zlib crew from the
list of contributors since no zlib code is actually in the
hdf5 library.
./INSTALL
./INSTALL.ascired
./MANIFEST
Minor updates for Beta release including version number
change.
./INSTALL_MAINT
Added information about making a release.
./RELEASE
Updated function list based on public header files.
./bin/checkposix
Got rid of complaints about some obvious things.
./doc/html/H5.api.html
./doc/html/RM_H5F.html
./src/H5F.c
./src/H5Fpublic.h
./test/tfile.c
Changed H5Fget_create_template() and H5Fget_access_template()
to H5Fget_create_plist() and H5Fget_access_plist() since that
conforms better to lots of other names.
./doc/html/Datatypes.html
./doc/html/ExternalFiles.html
./doc/html/Files.html
./doc/html/H5.api.html
./doc/html/H5.sample_code.html
./doc/html/RM_H5F.html
./doc/html/RM_H5Front.html
Changed `template' to `property list', etc.
./doc/html/Ragged.html [NEW]
Documentation for ragged arrays.
./src/H5Iprivate.h
./src/H5Ipublic.h
./src/H5I.c
Changed the scope of some symbols to be more local.
./src/H5.c
./src/H5AC.c
./src/H5D.c
./src/H5E.c
./src/H5F.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5I.c
./src/H5O.c
./src/H5Ocomp.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Omtime.c
./src/H5Oname.c
./src/H5P.c
./src/H5S.c
./src/H5Shyper.c
./src/H5Tbit.c
./src/H5Tconv.c
./src/H5V.c
./src/H5Z.c
./src/H5private.h
Fixed some violations of our naming scheme by adding HD to the
beginning of all Posix functions.
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H5Gget_objinfo
and renamed internal functions to match up with the renamed API functions.
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----------------------
./MANIFEST
./src/H5R.c [NEW]
./src/H5Rprivate.h [NEW]
./src/H5Rpublic.h [NEW]
./src/Makefile.in
./src/hdf5.h
./test/ragged.c [NEW]
Preliminary support for 2d ragged arrays for Mark Miller and
Jim Reus. Not fully implemented yet. The test is not actually
part of `make test' because we still have some memory problems.
./src/H5E.c
./src/H5Epublic.h
Added H5E_RAGGED as a major error number.
./bin/release
Checks the MANIFEST file against `svf ls' on systems that have
it.
./bin/trace
Fixed a bug that caused arguments of type `void *x[]' to not
be handled.
./src/H5.c
Removed unused variables and changed a couple types to
fix compiler warnings.
Added tracing support for ragged array object ID's and arrays
of pointers.
./src/H5D.c
H5Dcreate() will complain if either of the property lists are
invalid (instead of using the default).
./src/H5D.c
./src/H5Dprivate.h
Split H5Dget_space() into an API and internal function so it
can be called from the new ragged array layer.
./src/H5Fistore.c
Fixed warnings about unsigned vs. signed comparisons.
./src/H5Flow.c
Fixed a warning about a variable being shadowed in the MPI-IO
stuff.
./src/H5Iprivate.h
./src/H5Ipublic.h
Added the H5_RAGGED atom group.
./src/H5Shyper.c
Fixed some freeing-free-memory errors that resulted when
certain arrays were freed but the pointers were left in the
data structures. I simply set the pointers to null after they
were freed.
./src/H5Sprivate.h
./src/H5Sselect.c
Split the H5Sselect_hyperslab() function into an API and a
private function so it could be called from the ragged array
layer.
Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to
get rid or compiler warnings.
./src/H5Tconv.c
Removed a misleading comment.
./test/bittests.c
Fixed a warning about a printf().
./test/cmpd_dset.c
Fixed warnings about unused variables because of test #11
being commented out.
./bin/trace
Shortened the right margin for the output to allow room for
the `);' at the end of the TRACE() macros.
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----------------------
./src/H5Fistore.c
Fixed a bug that caused the wrong number of chunk offsets to
be read or written from the file.
./src/H5Z.c
Fixed a memory bug.
./test/dtypes.c
Removed redundant tests.
./bin/snapshot
Removed Perl code from a shell script. Oops :-)
./src/H5D.c
Removed cvs merge conflicts.
./src/H5Omtime.c
Fixed a typo in the Irix5.3 code.
./src/H5S.c
Fixed a memory leak.
./src/H5Shyper.c
Fixed a bad call to malloc() that didn't allocate enough
memory. Reordered a comparison to eliminate an array bounds
read error.
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----------------------
./MANIFEST
./src/H5Ssimp.c [REMOVED]
./src/Makefile.in
Removed H5Ssimp.c since it was no longer used.
./bin/snapshot
Fixed a few minor things to make it work better.
./src/H5D.c
Cleaned up H5D_read() and H5D_write() by combining some code
in each. Added timing calls around the data space calls when
H5S_DEBUG is defined.
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
Changed H5S_find() so it returns a table entry again instead
of copying the data into a caller-supplied buffer. This
allows the timers to be stored in the table and updated by the
caller. Added H5S_register() to register new table entries
and added entry creation to all the H5S selection
methods. Also changed lots of global functions to static
functions.
./src/H5Fistore.c
Fixed a memory bug in the raw data cache.
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----------------------
./bin/release
Added ./Makefile to the distribution again -- it got lost in
the changes last week although it isn't all that important a
file since it gets clobbered by configure anyway.
./bin/trace
./doc/html/Filters.html
./doc/html/H5.format.html
./doc/html/H5.user.html
./src/H5.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5E.c
./src/H5Epublic.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5O.c
./src/H5Ocomp.c
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Ssimp.c
./src/H5Z.c
./src/H5Zprivate.h
./src/H5Zpublic.h
./src/hdf5.h
./test/dsets.c
./tools/h5ls.c
Added the data filter pipeline, a generalization of the
compression stuff which allows things like checksums,
encryption, compression, performance monitoring, etc. See
./doc/html/Filters.html for details -- it replaces the
Compression.html doc.
./src/H5T.c
Cleaned up debugging output.
./config/linux
Added checks for egcs and pgcc and changed optimization flags
for the compilers.
./src/H5G.c
./tools/h5dump.c
Fixed compiler warnings in these files and others.
./configure.in
./src/H5private.h
./test/mtime.c
Added a check for difftime() and defined HDdifftime() to do
something else on systems that don't have difftime().
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----------------------
./src/H5.c
Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id.
Added array tracing where the array rank is stored in a simple
data space. Just use the name of the data space argument when
declaring the array argument:
herr_t
H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op,
const hssize_t start[/*space_id*/],
const hsize_t _stride[/*space_id*/],
const hsize_t count[/*space_id*/],
const hsize_t _block[/*space_id*/])
and when the program runs you'll see array values printed:
H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET,
start=0xbfffef4c {0}, _stride=NULL,
count=0xbfffef44 {64},
_block=NULL) = SUCCEED;
Added more symbolic data types to the tracing output.
./src/H5A.c
./src/H5Apublic.h
./src/H5D.c
./src/H5Dpublic.h
./src/H5F.c
./src/H5Fpublic.h
./src/H5G.c
./src/H5Gpublic.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Spublic.h
./src/H5Sselect.c
./src/H5Ssimp.c
./src/H5TB.c
./src/H5V.c
Changed some API argument names to be more consistent with
other API functions and to produce better tracing output.
Reformatted some long lines. Indented printf statements.
./tools/h5ls.c
Fixed warnings about unsigned vs. signed comparisons.
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point/element
selections and also fixed part of the problem with scalar dataspaces being
written/read from the file.
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dimensions.
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how to resume
when a buffer gets full. Also removed the check for disallowing zero-dim
extents on unlimited dimension datasets, per user's request.
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----------------------
./src/H5Fistore.c
./src/H5S.c
Fixed places where `herr_t' functions returned NULL for
failure: H5F_istore_get_addr() and printf(?!?) (probably
because a printf() was in the first column :-/ so I don't know
what function it really was that I fixed), and H5S_extent_copy().
./src/H5Fprivate.h
Added declarations for H5F_istore_get_addr() and
H5F_istore_allocate().
./src/H5S.c
./src/H5Sprivate.h
Split H5Sset_extent_simple() into H5S_set_extent_simple() and
replaced calls to the API function with calls to the internal
function.
Changed calls to H5Screate() to H5S_create() and H5Sclose() to
H5S_close().
./src/H5Shyper.c
./src/H5Spoint.c
Removed unused labels and variable.
./src/H5T.c
./src/H5Tconv.c
Changed calls to H5Tfind() to H5T_find().
./src/H5TB.c
Split function return type onto a separate line for five
functions and added API tracing calls.
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above dataspace
release calls in H5D_read and H5D_write.
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Moved the source of H5S_extent_npoints before H5Sextent_npoints to
reduce a compiler complaint.
H5Shyper.c:
H5Sprivate.h:
H5Spublic.h:
H5Sselect.c:
Changed the parameter declarations of H5S_hyper_add
and H5Sselect_hyperslab as originally intended as const hsize *.
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one incorrect
type. Should compile much cleaner now.
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to match
API defined in the html/Dataspaces.html document. This code does not include
support for strides, merging selections, or permutations of coordinates yet,
but it's a drop-in replacement for the existing API with the same features.
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