| Commit message (Collapse) | Author | Age | Files | Lines |
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* Spelling fixes for codespell
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Warnings fixes (#1680)
* Clean stack size warnings in sio_engine (#1687)
* Fixes stack size warnings in tcoords.c (#1688)
* Address some warnings from casting away of const (#1684)
* Fixes stack size warnings in ntypes (#1695)
* Fixes stack size warnings in dtransform (#1696)
* Fixes stack size warnings in set_extent test (#1698)
* Be a bit safer with signed arithmetic, thus quieting some signed-overflow warnings from GCC (#1706)
* Avoid a signed overflow: check the range of `entry_ptr->age` before
increasing it instead of increasing it and then checking the range.
This quiets a GCC warning.
* Avoid the potential for signed overflow by rewriting expressions
`MAX(0, fwidth - n)` as `MAX(n, fwidth) - n` for various `n`.
This change quiets some GCC warnings.
* Change some local variables that cannot take sensible negative values
from signed to unsigned. This quiets GCC warnings about potential
signed overflow.
* In a handful of instances, check the range of a signed integer before
increasing/decreasing it, just in case the increase/decrease overflows.
This quiets a handful of GCC signed-overflow warnings.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix object size warnings in cache.c test (#1701)
* Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings
* Move HDfree_const to H5private.h for wider use
* Print output from all ranks in parallel tests on allocation failure
* Move const pointer freeing macro to h5test.h for now
* Stop lying about H5S_t const-ness (#1209)
Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
* Fix a few warnings after recent H5S const-related changes (#1225)
* Adjustments for HDF5 1.12
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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file - src and test directories.
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* OESS-98 fix tools test for plugins
* sync fork
* Merge of changes from dev
* Move problem option to bottom of the list until fixed
* HDFFV-11106 - fix parsing optional args
* HDFFV-11106 add note
* grammer fix
* Whitespace after clang formatting
* Undo format version 11 changes
* Update check to working version
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(#275)
* Cache the pointer to the next point to process after the last call to
H5S__get_select_elem_pointlist. This allows the normal process of
iterating over the points in batches to be much more efficient, as the
library does not need to traverse the entirety of the preceding points
every time the funciton is re-entered.
* Update RELEASE.txt for point selection iteration performance fix.
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~VCHOI/my_third_fork:bugfix/develop_seg_fault_sel_compat to develop
* commit '81b1ed4e1724b8a6a731ab2b8fb03234a8b49d15':
Fix issues when deserializing point/all/none selection with version beyond the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace
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https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12"
This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing
changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
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callbacks. This makes the
procedure for checking it consistent across selection types and between
_s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
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H5Sselect_adjust. Implement "adjust_s" callback for all selection
types. Add range checking to H5Sselect_adjust().
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with tests and minor cleanups and refactorings.
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share dataspace's selection with iterator (and with caution about not modifying
or closing the dataspace while the iterator is open).
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This also addresses HDFFV-10255: H5Sencode/decode performance issue.
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the H5Sencode changes.
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing
changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
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merge_hyperslab_updates
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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improvements.
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Modifications to fix H5Sencode bug when num points selected is > 2^32.
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and replace it with new url for COPYING file.
Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
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More warning cleaups: down to 770 warnings (from ~940) in 134 files (from
148), with 28 unique kinds of warnings (from 31).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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H5S recursive functions where an aliased pointer was
incorrectly set too early.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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changes will be merged more carefully so we can more easily
identify any errors that arise.
Tested on: Ubuntu 15.04 (Linux 3.19 x86_64) w/ gcc 4.9.2
serial and parallel (w/ MPICH 3.1.4)
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Merge changes from trunk to the branch.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Update dataspace selection encode/decode routines to avoid type aliasing
errors.
Tested on:
Linux/64 2.6.x (platypus) w/production
(h5committest forthcoming)
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Sync w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Revert changes to pass file pointer to selection serialize/deserialize
routines. Also patch back in some changes that were merged out in the
previous merge w/trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(h5committest not required on this branch)
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selections, incorrect
numbers of elements selected, incorrect "slice" through limited dimensions,
incorrect number of printf substitutions.
Patch source selection space extent with bounds of selection if extent is
unknown before returning via H5Pget_virtual_srcspace.
Write updated VDS dataspace to file when it changes due to unlimited selections.
Other minor fixes/cleanup.
Tested: ummon
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Other comments.
Add some input checking.
Tested: ummon
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