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* [svn-r8782] Purpose:Quincey Koziol2004-07-011-1/+1
| | | | | | | | | | | Code cleanup Description: Clean up almost all warnings from Windows builds. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8731] Purpose:Quincey Koziol2004-06-231-2/+0
| | | | | | | | | | | | | | | Code cleanup & minor optimization Description: Re-work the way interface initialization routines are specified in the library to avoid the overhead of checking for them in routines where there is no interface initialization routine. This cleans up warnings with gcc 3.4, reduces the library binary size a bit (about 2-3%) and should speedup the library's execution slightly. Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc34 h5committest
* [svn-r8683] Purpose:Quincey Koziol2004-06-141-6/+6
| | | | | | | | | | | | | Code optimization Description: Use 'size_t' instead of 'hsize_t' to track the number of elements in memory buffers, especially for type conversion. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8677] Purpose:Quincey Koziol2004-06-141-1/+1
| | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Remove old structures that used a union to store information about the dataspace extent and just store the information directly in the dataspace extent itself. Remove ifdef'd references to permutation ordering in dataspaces. We'll definitely need more than this code if/when we implement this feature. Change allocation of dataspace information from calloc() to malloc(). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8673] Purpose:Quincey Koziol2004-06-131-50/+33
| | | | | | | | | | | | | | | | | | Code optimization Description: Revised dataspace selections to use a more "object oriented" mechanism to set the function pointers for each selection and selection iterator. This reduces the amount and number of times that dataspace selection info has to be copied. Additionally, change hyperslab selection information to be dynamically allocated instead of an inline struct. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8613] Purpose:Quincey Koziol2004-06-051-26/+28
| | | | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest Misc. update:
* [svn-r8590] Purpose:Quincey Koziol2004-05-271-0/+2
| | | | | | | | | | | | | | | | | | | | | Code optimization & bug fix Description: When dimension information is being stored in the storage layout message on disk, it is stored as 32-bit quantities, possibly truncating the dimension information, if a dimension is greater than 32-bits in size. Solution: Fix the storage layout message problem by revising file format to not store dimension information, since it is already available in the dataspace. Also revise the storage layout data structures to be more compartmentalized for the information for contiguous, chunked and compact storage. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r8560] Purpose:Quincey Koziol2004-05-211-0/+2
| | | | | | | | | | | | Bug fix Description: Add prototypes for H5S_select_serial_size() and H5S_select_serialize() that were causing the library to fail when built with C++ compiler. Platforms tested: FreeBSD 4.9 (sleipnir) w/CC=g++ Only affects C++ builds, so no h5committest
* [svn-r8544] Purpose:Quincey Koziol2004-05-201-0/+52
| | | | | | | | | | | | | | Code optimization Description: Expand the use of macros to inline trivial function pointer lookup and calls to reduce the overall number of functions invoked during normal operation of the library. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8513] Purpose:Quincey Koziol2004-05-131-1/+1
| | | | | | | | | | | | Code optimization Description: Defer creating the span trees for hyperslab selections until they are actually needed (which may be never, in certain circumstances). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8496] Purpose:Quincey Koziol2004-05-081-2/+2
| | | | | | | | | | | | | Code optimization Description: Further reduce the number of copies we make of a hyperslab selection for chunked I/O, especially when we are only going to throw the old selection away for a new one. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8462] Purpose:Quincey Koziol2004-05-011-4/+4
| | | | | | | | | | | | | Code optimization Description: Reduce the number of times the number of elements in a selection is computed. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8460] Purpose:Quincey Koziol2004-05-011-5/+7
| | | | | | | | | | | | | | | Code optimization Description: Move the element size for the selection into the selection iterator instead of always passing it as a parameter. Also, eleminate another 64-bit multiply for "all" selections. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8408] Purpose:Quincey Koziol2004-04-221-6/+14
| | | | | | | | | | | | | | Code optimization Description: Instead of dynamicly allocating various arrays for various pieces of information about a selection or selection iterator, just use fixed size array of size H5S_MAX_RANK (as the rest of the library does). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) h5committest
* [svn-r8335] Purpose:Quincey Koziol2004-04-101-0/+3
| | | | | | | | | | | | | | | Code optimization Description: Change algorithm to directly use coordinates describing a chunk's position in a dataspace instead of creating a dataspace with the chunk's position selected. This reduces the number of copies of dataspaces we need to keep around. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8158] Purpose:Quincey Koziol2004-02-061-16/+18
| | | | | | | | | | | | | | | | | Code cleanup/optimization Description: Query property list values once, at the beginning of the I/O routines, instead of querying the property list values multiple (lots!) of times in lower level routines. Solution: Create "property list caches" for internal library queries of the property list values. Platforms tested: IBM p690 (copper) w/parallel & fphdf5 h5committest
* [svn-r7943] Purpose:Quincey Koziol2003-12-131-2/+3
| | | | | | | | | | | | | | | Bug fix. Description: Using a selection offset with hyperslab selections in chunked datasets was getting into an infinite loop and hanging the application. Solution: Apply the selection offset to the hyperslab selection properly. Platforms tested: FreeBSD 4.9 (sleipnir) w & w/o parallel h5committest
* [svn-r7789] Purpose:Quincey Koziol2003-10-291-1/+0
| | | | | | | | | | | | | | | Bug fix & code cleanups Description: Change our use of MPI derived datatypes to not create datatypes with "0-sized" lengths, which causes the LANL Q machine to hang. Also, get rid of "prefer MPI derived datatypes" environment variable since it has no advantage. Platforms tested: FreeBSD 4.9 (sleipnir) w & w/o parallel h5committest
* [svn-r7754] Purpose:Quincey Koziol2003-10-271-1/+1
| | | | | | | | | | | | | Code cleanup Description: Straighten out more goofiness in the MPI code dealing with collective I/O transfers - mostly make certain that a view is set if-and-only-if collective I/O is occurring on raw data (and vice versa for views and independent I/O) Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel & FPHDF5 too minor to repquire h5committest
* [svn-r7259] Purpose:Quincey Koziol2003-07-231-0/+10
| | | | | | | | | | | | | | | Bug fix Description: I/O on chunked datasets with point selections was not working correctly. Solution: Re-wrote some parts of raw data I/O routines that build the selections for each chunk to correctly handle point selections. Platforms tested: FreeBSD 4.8 (sleipnir) h5committest
* [svn-r7223] Purpose:Quincey Koziol2003-07-141-1/+1
| | | | | | | | | | | Code cleanup Description: Clean up more warnings from lint Platforms tested: FreeBSD 4.8 (sleipnir) too minor for h5committest
* [svn-r6957] Purpose:Quincey Koziol2003-06-041-1/+12
| | | | | | | | | | | | | | | | Code cleanup & performance improvements Description: Optimize hyperslabs that are built to detect situations where "regular" hyperslabs can be recovered from span tree descriptions. Also, improve "same shape" routine to correctly work with all the different combinations of selections. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6942] Purpose:Quincey Koziol2003-05-311-2/+11
| | | | | | | | | | | | | | | | | Performance improment Description: Speed up chunked dataset I/O. This breaks down into several areas: - Compute chunk selections in the file by using hyperslab operations instead of iterating over each element in the selection. - If the file and memory selections are the same shape, use the file chunk selections to compute the memory chunk selections. This required several additional dataspace, dataspace selection and hyperslab routines. Platforms tested: h5committestted (although Fortran tests failed for some reason)
* [svn-r6843] Purpose:Quincey Koziol2003-05-091-0/+9
| | | | | | | | | | | | Code cleanup Description: Clean up warnings exposed by compiling on O2K. Also, revert some of Bill and my changes to the H5S_mpi_opt_types_g, etc. and settle them back into their original location. Platforms tested: h5committested.
* [svn-r6837] Purpose:Quincey Koziol2003-05-081-65/+9
| | | | | | | | | | | | | | | Code cleanup. Description: Move many package or internal function prototypes and macro definitions into tighter scope according to their current use. Added more comments where appropriate. Eliminate ancient, unused functions. Added a couple "accessor" functions to get parts of data structures which were moved out of scope. Platforms tested: h5committested
* [svn-r6825] Purpose:Quincey Koziol2003-05-071-19/+59
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6608] Purpose:Quincey Koziol2003-04-091-0/+2
| | | | | | | | | | | | | | | | | | New feature Description: Added new internal API function: H5S_create_simple() for creating simple dataspaces inside the library. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6411] Purpose:Quincey Koziol2003-02-171-12/+14
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up miscellaneous warnings which have crept into the code. Fix "_POSIX_C_SOURCE not defined" warning on FreeBSD. Adjust gcc compiler flags to be more concise for production mode. Refactor the H5O code so that there is a stronger boundary between code in the H5O package and code in the library which just calls H5O routines. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel and gcc 2.95.4 & gcc 3.2.2 Misc. update: Update MANIFEST if you add or remove any file.
* [svn-r6387] Purpose:Quincey Koziol2003-02-101-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Metadata cache in parallel I/O can cause hangs in applications which perform independent I/O on chunked datasets, because the metadata cache can attempt to flush out dirty metadata from only a single process, instead of collectively from all processes. Solution: Pass a dataset transfer property list down from every API function which could possibly trigger metadata I/O. Then, split the metadata cache into two sets of entries to allow dirty metadata to be set aside when a hash table collision occurs during independent I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Updated release_docs/RELEASE
* [svn-r6252] Purpose:Quincey Koziol2003-01-091-17/+23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Lots of performance improvements & a couple new internal API interfaces. Description: Performance Improvements: - Cached file offset & length sizes in shared file struct, to avoid constantly looking them up in the FCPL. - Generic property improvements: - Added "revision" number to generic property classes to speed up comparisons. - Changed method of storing properties from using a hash-table to the TBBT routines in the library. - Share the propery names between classes and the lists derived from them. - Removed redundant 'def_value' buffer from each property. - Switching code to use a "copy on write" strategy for properties in each list, where the properties in each list are shared with the properties in the class, until a property's value is changed in a list. - Fixed error in layout code which was allocating too many buffers. - Redefined public macros of the form (H5open()/H5check, <variable>) internally to only be (<variable>), avoiding innumerable useless calls to H5open() and H5check_version(). - Reuse already zeroed buffers in H5F_contig_fill instead of constantly re-zeroing them. - Don't write fill values if writing entire dataset. - Use gettimeofday() system call instead of time() system when checking the modification time of a dataset. - Added reference counted string API and use it for tracking the names of objects opening in a file (for the ID->name code). - Removed redundant H5P_get() calls in B-tree routines. - Redefine H5T datatype macros internally to the library, to avoid calling H5check redundantly. - Keep dataspace information for dataset locally instead of reading from disk each time. Added new module to track open objects in a file, to allow this (which will be useful eventually for some FPH5 metadata caching issues). - Remove H5AC_find macro which was inlining metadata cache lookups, and call function instead. - Remove redundant memset() calls from H5G_namei() routine. - Remove redundant checking of object type when locating objects in metadata cache and rely on the address only. - Create default dataset object to use when default dataset creation property list is used to create datasets, bypassing querying for all the property list values. - Use default I/O vector size when performing raw data with the default dataset transfer property list, instead of querying for I/O vector size. - Remove H5P_DEFAULT internally to the library, replacing it with more specific default property list based on the type of property list needed. - Remove redundant memset() calls in object header message (H5O*) routines. - Remove redunant memset() calls in data I/O routines. - Split free-list allocation routines into malloc() and calloc()- like routines, instead of one combined routine. - Remove lots of indirection in H5O*() routines. - Simplify metadata cache entry comparison routine (used when flushing entire cache out). - Only enable metadata cache statistics when H5AC_DEBUG is turned on, instead of always tracking them. - Simplify address comparison macro (H5F_addr_eq). - Remove redundant metadata cache entry protections during dataset creation by protecting the object header once and making all the modifications necessary for the dataset creation before unprotecting it. - Reduce # of "number of element in extent" computations performed by computing and storing the value during dataspace creation. - Simplify checking for group location's file information, when file has not been involving in file-mounting operations. - Use binary encoding for modification time, instead of ASCII. - Hoist H5HL_peek calls (to get information in a local heap) out of loops in many group routine. - Use static variable for iterators of selections, instead of dynamically allocation them each time. - Lookup & insert new entries in one step, avoiding traversing group's B-tree twice. - Fixed memory leak in H5Gget_objname_idx() routine (tangential to performance improvements, but fixed along the way). - Use free-list for reference counted strings. - Don't bother copying object names into cached group entries, since they are re-created when an object is opened. The benchmark I used to measure these results created several thousand small (2K) datasets in a file and wrote out the data for them. This is Elena's "regular.c" benchmark. These changes resulted in approximately ~4.3x speedup of the development branch when compared to the previous code in the development branch and ~1.4x speedup compared to the release branch. Additionally, these changes reduce the total memory used (code and data) by the development branch by ~800KB, bringing the development branch back into the same ballpark as the release branch. I'll send out a more detailed description of the benchmark results as a followup note. New internal API routines: Added "reference counted strings" API for tracking strings that get used by multiple owners without duplicating the strings. Added "ternary search tree" API for text->object mappings. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Other platforms/configurations tested? FreeBSD 4.7 (sleipnir) serial & parallel Solaris 2.6 (baldric) serial
* [svn-r5931] MuQun Yang2002-09-201-36/+36
| | | | | | | | | | | | Purpose: __DLL__ is a keyword in some platforms and __DLL__ is also defined as a macro for windows DLL applications. That causes problems. Description: Solution: Use H5_DLL*** to replace __DLL***__ at all header files. Change the macro defination at H5api_adpt.h. Platforms tested: linux2.2.18smp, irix64, solaris 2.7 and windows 2000
* [svn-r5921] Purpose:Quincey Koziol2002-09-111-2/+2
| | | | | | | | | | | | | | | | | Code cleanup Description: Two of the parameters to H5S_select_hyperslab are defined as "const hsize_t foo[]", and then "foo" is assigned another value, which is technically against the C standard and is now causing problems for a user with a more strict compiler. Solution: Changed "const hsize_t foo[]" to "const hsize_t *foo". Platforms tested: FreeBSD 4.6 (sleipnir) - not a significant enough change to worry about multi-platform testing.
* [svn-r5894] Purpose:Quincey Koziol2002-08-271-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix/Code cleanup/New Feature Description: Correct problems with writing fill-values to external storage and allocate the data storage at the correct times. Also, mostly straighten out the strange code which allocates and fills raw data storage for datasets. Things are still a bit odd in that the fill-values for chunked datasets are written when the space is allocated, instead of in a separate routine, but there are two reasons for this: it's inefficient (especially in parallel) to iterate through all the chunks twice, and (more importantly) the space needed to store compressed chunks isn't known until we've got a buffer of compressed fill-values ready to write to the chunk. Additionally, add in the H5D_SPACE_ALLOC_INCR and H5D_SPACE_ALLOC_DEFAULT setting for the "space time", which incorporate the previous behavior of the space allocation for chunked datasets. The default settings for the different types of dataset storage are now as follows: Contiguous - Late Chunked - Incremental Compact - Early This checkin also incorporates a change to the behavior of external data storage in two ways - fill-values are _never_ written to external storage (under the assumption that writing fill-values is triggered by allocating space in an HDF5 file, and since space is not allocated in the file, the fill-values should not be written) and external data files are now created if they don't exist when data is written to them. The fill-value will probably need to be revisited at some time in the future, this just seemed like the safer course currently. I think I cleaned up some compiler errors also, before getting bogged down in the fixes for the space allocation and fill-values. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5839] Purpose:Quincey Koziol2002-07-311-23/+5
| | | | | | | | | | | | | | | Code cleanup Description: Move operations on each type of selection into the source code file for each selection type (all->H5Sall.c, hyperslab->H5Shyper.c, etc.) Remove central H5S_select_<foo> operations, instead calling the operations through function pointers in each selection (a much more object-oriented approach). Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5834] Purpose:Quincey Koziol2002-07-241-62/+49
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Large code cleanup/re-write Description: This is phase 1 of the data I/O re-architecture, with the following changes: - Changed the selection drivers to not actually do any I/O, they only generate the sequences of offset/length pairs needed for the I/O (or memory access, in the case of iterating or filling a selection in a memory buffer) - Wrote more abstract I/O routines which get the sequence of offset/ length pairs for each selection and access perform the I/O or memory access. Benefits of this change include: - Removed ~3400 lines of quite redundant code, with corresponding reduction in the size of library binary. - Any selection can now directly access memory when performing I/O, if no type conversions are required, instead of just "regular" hyperslab and 'all' selections, which speeds up I/O. - Sped up I/O for hyperslab selections which have contiguous lower dimensions by "flattening" them out into lesser dimensional objects for the I/O. No file format or API changes were necessary for this change. The next phase will be to create a "selection driver" for each type of selection, allowing each type of selection to directly call certain methods that only apply to that type of selection, instead of passing through dozens of functions which have switch statements to call the appropriate method for each selection type. This will also reduce the amount of code in the library and speed things up a bit more. Phase 3 will involve generating an MPI datatype for all types of selections, instead of only "regular" hyperslab and 'all' selections. This will allow collective parallel I/O for all I/O operations which don't require type conversions. It will also open up the door for allowing collective I/O on datasets which require type conversion. Phase 4 will involve changing the access pattern to deal with chunked datasets in a more optimal way (in serial). Phase 5 will deal with accessing chunked datasets more optimally for collective parallel I/O operations. Platforms tested: FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
* [svn-r5680] Purpose:Quincey Koziol2002-06-191-2/+4
| | | | | | | | | | | | | | | | | | | | New feature. Description: There is some discussion among the SAF team as to whether it is better to use MPI derived types for raw data transfers (thus needing a MPI_File_set_view() call), or whether it is better to use a sequence of low-level MPI types (i.e. MPI_BYTE) for the raw data transfer. Solution: Added an in internal flag to determine whether derived types are preferred (the default), or whether they should be avoided. An environment variable ("HDF5_MPI_PREFER_DERIVED_TYPES") can be set by users to control whether MPI types should be used or not. Set the environment variable to "0" (i.e.: 'setenv HDF5_MPI_PREFER_DERIVED_TYPES 0' to avoid using MPI derived types. Platforms tested: IRIX64 6.5 (modi4) w/parallel
* [svn-r5543] Purpose:Quincey Koziol2002-06-061-6/+0
| | | | | | | | | | Bug fix. Description: Return H5S_all_opt_possible() prototype to original position in H5Spkg.h, it is not related to parallel I/O. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5530] Purpose:Bill Wendling2002-06-041-1/+8
| | | | | | | | | | | | | | | Code Cleanup Description: Removed some compiler warnings. Solution: In a few cases, NULL was being returned when a FAIL was supposed to be returned instead. There were some header files which needed to be included in a few of the sources. A couple of if-then statements had assignments in the conditional part. The compiler warned that they should have extra "()"s around them. Made the code check the values instead. Platforms tested: Linux (parallel) Modi4 (parallel)
* [svn-r5328] Purpose:Quincey Koziol2002-05-021-2/+1
| | | | | | | | | | | Code cleanup Description: Remove an extraneous data structure for tracking the location of a hyperslab iterator when walking through regular hyperslab selections. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5261] Purpose:Quincey Koziol2002-04-251-1/+1
| | | | | | | | | | Code cleanup Description: Remove more debugging printf's that were ifdef'd out. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5259] Purpose:Quincey Koziol2002-04-251-19/+8
| | | | | | | | | | | | | | | | Code cleanup Description: Previously, the I/O pipeline (pline), external file list (efl) and fill- value (fill) structs were passed down the raw data function call chain, even into and/or through functions which didn't use them. Since all three of these pieces of information are available from the dataset creation property list, just pass the dataset creation property list down the function call chain and query for the information needed in a particular function. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5170] Raymond Lu2002-04-111-4/+4
| | | | | | | | | | | Purpose: New feature Description: Fill-value's behaviors for contiguous dataset have been redefined. Basicly, dataset won't allocate space until it's necessary. Full details are available at http://hdf.ncsa.uiuc.edu/RFC/Fill_Value, at this moment. Platforms tested: Linux 2.2.
* [svn-r5168] Pedro Vicente Nunes2002-04-111-1/+9
| | | | | | | | | | | | | | | | | | | | | | Purpose: H5Dset_extent API function Description: 1 new public function: H5Dset_extent, that allows shrinking a dataset several private functions that free the previously allocated chunks H5F_istore_prune_by_extent, H5B_prune_by_extent : removes the chunks H5F_istore_initialize_by_extent : initializes them with the fill value H5S_select_fill is used to fill the selection in the memory buffer Platforms tested: Windows 2000 SUN( arabica) LINUX (eirene) IRIX64 (modi4)
* [svn-r5152] Purpose:Quincey Koziol2002-04-091-0/+2
| | | | | | | | | | | | | | | New Feature Description: Added new H5Dfill() routine to fill the elements in a selection for a memory buffer with a fill value. This is a user API wrapper around some internal routines which were needed for the fill-value modifications from Raymond as well as Pedro's code for reducing the size of a chunked dataset. Platforms tested: FreeBSD 4.5 (sleipnir) [and IRIX64 6.5 (modi4) in parallel, in a few minutes]
* [svn-r5138] Purpose:Quincey Koziol2002-04-031-19/+17
| | | | | | | | | | | | | | | | | | | | | | Bug Fix & Code Cleanup Description: The MPI-IO optimized transfer routines (H5S_mpio_spaces_read/H5S_mpio_space_write) are not being invoked in all the cases where they could be used. Additionally, the code for determining if an optimized transfer is wrapped into the actual I/O transfer routine in a very confusing way. Solution: Re-enabled MPI-IO optimized transfer routines in all the cases where they should work. Extracted all the pre-conditions for optimized transfers into separate routines from the transfer routines. Platforms tested: FreeBSD 4.5 (sleipnir) & IRIX64 6.5 (modi4)
* [svn-r5131] Purpose:Quincey Koziol2002-04-021-1/+5
| | | | | | | | | | | | | | Code cleanup Description: The function pointer for doing parallel I/O was being set in the H5D_read and H5D_write routines instead of in H5S_conv, where it belongs. Solution: Added an extra 'flags' parameter to H5S_find to allow the function to determine when to set the MPIO functions instead of the regular optimized I/O routines and get rid of code messing with the function pointer in the H5D routines. Platforms tested: IRIX64 6.5 (modi4)
* [svn-r5130] Purpose:Quincey Koziol2002-04-021-0/+1
| | | | | | | | | | | | | | | | | | | | | | Bug Fix & Feature Description: The selection offset was being ignored for optimized hyperslab selection I/O operations. Additionally, I've found that the restrictions on optimized selection I/O operations were too strict and found a way to allow more hyperslabs to use the optimized I/O routines. Solution: Incorporate the selection offset into the selection location when performing optimized I/O operations. Allow optimized I/O on any single hyperslab selection and also allow hyperslab operations on chunked datasets. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4965] Purpose:Quincey Koziol2002-02-141-12/+16
| | | | | | | | | | | | | Bug Fix Description: If a non-zero fill-value is used for a chunked dataset, any non-existent chunked read with an "all" selection (or a contiguous hyperslab selection) will return zero for those instead of the user's fill-value. Solution: Fixed I/O code to pass down fill-value to "optimized" I/O routines, so it will be available to fill the user's buffer with. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r4921] Pedro Vicente Nunes2002-02-071-0/+1
| | | | | | | | | | | | | Description: modified the below files to inlude a new public function H5Dset_extend, similar to H5Dextend, but it can lower the dimension this function requires 2 more new private functions: H5D_set_extend H5S_set_extend Platforms tested:
* [svn-r4914] Purpose:Quincey Koziol2002-02-071-10/+0
| | | | | | | | | | | | | | | | | | Bug fix & feature add Description: Added new API function H5Sget_select_type to determine type of selection in a dataspace. Return values are defined by the H5S_sel_type enumerated type in H5Spublic.h Also, hyperslab operations involving a "all" or "none" selection are not generating the correct resulting selections. Solution: Added more code to make hyperslab operations against an "all" or "none" selection generate the correct results. Platforms tested: FreeBSD 4.5 (sleipnir)
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