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| | | * Merge branch 'develop' into hdffv_10355Dana Robinson2018-03-061-0/+5
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| | | | * Fix for HDFFV-10357 (CVE-2017-17508).Dana Robinson2018-02-271-0/+5
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| | | * | Fix for HDFFV-10355 (CVE-2017-17506).Dana Robinson2018-02-271-4/+9
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| | | * Changes made based on code reviews.Vailin Choi2018-01-121-3/+2
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| | | * (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-6/+6
| | | |\ | | | | | | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| | | * | Initial checkin for library version boundsVailin Choi2017-10-031-8/+26
| | | |/ | | | | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| | * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-533/+676
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| * | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-14/+41
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| * | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-2/+2
| | | | | | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
| * | merge from develop and apply HDFFV-8611Allen Byrne2017-05-241-1449/+1410
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| * | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* | | Changes to make timers within the library monotonic.Quincey Koziol2017-09-031-11/+24
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* | HDFFV-10186 Add endianess to bitfield and fix testsAllen Byrne2017-05-101-8/+21
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* | HDFFV-10186 Whitespace changesAllen Byrne2017-05-091-1441/+1389
| | | | | | | | Mostly replacing tabs with spaces Removed empty mod sections
* | Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
|/ | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-2/+2
| | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-041-0/+43
| | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* [svn-r30139] Description:Quincey Koziol2016-07-021-0/+72
| | | | | | | | Bring over missing flush+refresh routines, to address Java failures. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production Linux/64 2.6.18 (jam) w/Java
* [svn-r30113] Description:Quincey Koziol2016-06-281-0/+2
| | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-0/+11
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-241-0/+29
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-1/+1
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-181/+181
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-181/+181
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r28606] Description:Quincey Koziol2015-12-131-15/+3
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-1/+1
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r27811] Description:Quincey Koziol2015-09-161-0/+2
| | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-151-0/+1
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| * [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-141-0/+8
| |\ | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| * \ [svn-r27222] Merge of r27035-27221 from the trunk.Dana Robinson2015-06-171-1/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM: Serial: C++ and Fortran 2003 Parallel: Fortran
| * \ \ [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-071-212/+313
| |\ \ \ | | | | | | | | | | | | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| * | | | [svn-r26543] Description:Quincey Koziol2015-03-231-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LLONG_TO_LDOUBLE_CORRECT macro/define, it's working around bugs in very old SGI/FreeBSD/Windows compilers. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not needed on this branch)
| * | | | [svn-r26513] Description:Quincey Koziol2015-03-201-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LDOUBLE_TO_LLONG_ACCURATE macro/define, it's working around bugs in older SGI, HP/UX, MacOSX and Windows .NET 2003 compilers. Tested on: MacOSX/64 (amazon) 10.10.2 w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26508] Description:Quincey Koziol2015-03-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove HW_FP_TO_LLONG_NOT_WORKS macro/define, it was only addressing Windows .NET 2003 compiler issues. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26503] Description:Quincey Koziol2015-03-201-4/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove old platform configure files: craynv, dec-flags, hpux11.23, ia64-linux-gnu, nec-superux14.1, sv1-cray, x86_64-redstorm-linux-gnu Also remove CONVERT_DENORMAL_FLOAT, since this was only set in the configure files being removed. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26499] Description:Quincey Koziol2015-03-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove ULLONG_TO_FP_CAST_WORKS macro/define, as it only applies to older platforms we aren't supporting any longer. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26494] Description:Quincey Koziol2015-03-191-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LDOUBLE_TO_UINT_ACCURATE macro/define, it was addressing problems with older Intel compilers on Linux that are no longer supported. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26492] Description:Quincey Koziol2015-03-191-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the FP_TO_ULLONG_ACCURATE and FP_TO_ULLONG_RIGHT_MAXIMUM macros/defines, which were added to address problems with older PGI compilers and HP-UX systems and are no longer supported. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26489] Description:Quincey Koziol2015-03-191-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the ULONG_TO_FP_BOTTOM_BIT_ACCURATE macro/define, as it was added for SGI systems and old Solaris systems, which are no longer supported. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required)
| * | | | [svn-r26483] Description:Quincey Koziol2015-03-191-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove INTEGER_TO_LDOUBLE_ACCURATE macro/define - we no longer support SGI systems. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26258] Description:Quincey Koziol2015-02-201-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove LDOUBLE_TO_INTEGER_WORKS macro/define from configure/library/tests, since it was added to support non-standard behavior on SGI IRIX & HP-UX, which we don't support any longer. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | | | | [svn-r27768] Description:Quincey Koziol2015-09-141-243/+255
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | | | [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-1/+1
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* | | | | [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-1/+1
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | available Fix tests accordingly
* | | | [svn-r27428] Bug fix: DAILYTEST-170Albert Cheng2015-07-241-0/+8
| |_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623). Solution: Reverse revisions r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro r26627: bring back WANT_DATA_ACCURACY configure macro which is used together with the above two macros. This also brings back the enable-dconv-accuracy configure option. Tested: h5committested. Also tested in ostrich using the XL compilers.
* | | [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-1/+1
| |/ |/| | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r26907] Check range and fix conversion issue of compound members in ↵Jerome Soumagne2015-04-231-9/+25
| | | | | | | | | | | | H5T_copy/H5T_set_loc Tested: local linux
* | [svn-r26868] Remove accum_change assert in H5T for nowJerome Soumagne2015-04-211-2/+2
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* | [svn-r26848] Fix warnings in H5TJerome Soumagne2015-04-201-31/+115
| | | | | | | | Tested: local linux
* | [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-177/+177
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
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