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* Fixed HDFFV-10404Binh-Minh Ribler2018-07-261-1/+1
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-533/+649
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| * Cleanup API context function usage.Quincey Koziol2018-03-191-30/+3
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-14/+41
| |\ | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| | * Merge branch 'develop' into hdffv_10355Dana Robinson2018-03-061-0/+5
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| | | * Fix for HDFFV-10357 (CVE-2017-17508).Dana Robinson2018-02-271-0/+5
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| | * | Fix for HDFFV-10355 (CVE-2017-17506).Dana Robinson2018-02-271-4/+9
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| | * Changes made based on code reviews.Vailin Choi2018-01-121-3/+2
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| | * (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-6/+6
| | |\ | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| | * | Initial checkin for library version boundsVailin Choi2017-10-031-8/+26
| | |/ | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-533/+676
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| * HDFFV-10186 Add endianess to bitfield and fix testsAllen Byrne2017-05-101-8/+21
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| * HDFFV-10186 Whitespace changesAllen Byrne2017-05-091-1441/+1389
| | | | | | | | Mostly replacing tabs with spaces Removed empty mod sections
| * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-14/+41
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* | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-2/+2
| | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | merge from develop and apply HDFFV-8611Allen Byrne2017-05-241-1449/+1410
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* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-2/+2
| | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-041-0/+43
| | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* [svn-r30139] Description:Quincey Koziol2016-07-021-0/+72
| | | | | | | | Bring over missing flush+refresh routines, to address Java failures. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production Linux/64 2.6.18 (jam) w/Java
* [svn-r30113] Description:Quincey Koziol2016-06-281-0/+2
| | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-0/+11
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-241-0/+29
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-1/+1
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-181/+181
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-181/+181
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r28606] Description:Quincey Koziol2015-12-131-15/+3
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-1/+1
| | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* [svn-r27811] Description:Quincey Koziol2015-09-161-0/+2
| | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* [svn-r27794] Reintegration merge of features/autotools_rework branch with trunkDana Robinson2015-09-151-0/+1
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | NOTES: - Developers will have to run autogen.sh before building with the autotools. - autogen.sh takes the -p option to mimic the old bin/reconfigure behavior. - The generated error, overflow and version headers have been left in place. - The generated H5LT parser code has also been left in place. - There are no changes for CMake users at this time. Tested on: h5committest
| * [svn-r27507] Merge of r27237-27500 from the trunk.Dana Robinson2015-08-141-0/+8
| |\ | | | | | | | | | | | | | | | | | | | | | Tested w/ h5committest NOTES: - The manifest may still be messed up. - Cmake fails since the dual binary work needs to be merged with this repo's CMake externals.
| * \ [svn-r27222] Merge of r27035-27221 from the trunk.Dana Robinson2015-06-171-1/+1
| |\ \ | | | | | | | | | | | | | | | | | | | | Tested on 64-bit linux VM: Serial: C++ and Fortran 2003 Parallel: Fortran
| * \ \ [svn-r27038] Merge of r26393-27031 from the trunk.Dana Robinson2015-05-071-212/+313
| |\ \ \ | | | | | | | | | | | | | | | Tested on 64-bit linux VM w/ C++ and Fortran 2003
| * | | | [svn-r26543] Description:Quincey Koziol2015-03-231-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LLONG_TO_LDOUBLE_CORRECT macro/define, it's working around bugs in very old SGI/FreeBSD/Windows compilers. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not needed on this branch)
| * | | | [svn-r26513] Description:Quincey Koziol2015-03-201-4/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LDOUBLE_TO_LLONG_ACCURATE macro/define, it's working around bugs in older SGI, HP/UX, MacOSX and Windows .NET 2003 compilers. Tested on: MacOSX/64 (amazon) 10.10.2 w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26508] Description:Quincey Koziol2015-03-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove HW_FP_TO_LLONG_NOT_WORKS macro/define, it was only addressing Windows .NET 2003 compiler issues. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26503] Description:Quincey Koziol2015-03-201-4/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove old platform configure files: craynv, dec-flags, hpux11.23, ia64-linux-gnu, nec-superux14.1, sv1-cray, x86_64-redstorm-linux-gnu Also remove CONVERT_DENORMAL_FLOAT, since this was only set in the configure files being removed. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26499] Description:Quincey Koziol2015-03-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove ULLONG_TO_FP_CAST_WORKS macro/define, as it only applies to older platforms we aren't supporting any longer. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26494] Description:Quincey Koziol2015-03-191-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the LDOUBLE_TO_UINT_ACCURATE macro/define, it was addressing problems with older Intel compilers on Linux that are no longer supported. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26492] Description:Quincey Koziol2015-03-191-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the FP_TO_ULLONG_ACCURATE and FP_TO_ULLONG_RIGHT_MAXIMUM macros/defines, which were added to address problems with older PGI compilers and HP-UX systems and are no longer supported. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26489] Description:Quincey Koziol2015-03-191-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove the ULONG_TO_FP_BOTTOM_BIT_ACCURATE macro/define, as it was added for SGI systems and old Solaris systems, which are no longer supported. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required)
| * | | | [svn-r26483] Description:Quincey Koziol2015-03-191-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove INTEGER_TO_LDOUBLE_ACCURATE macro/define - we no longer support SGI systems. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | | | [svn-r26258] Description:Quincey Koziol2015-02-201-14/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Remove LDOUBLE_TO_INTEGER_WORKS macro/define from configure/library/tests, since it was added to support non-standard behavior on SGI IRIX & HP-UX, which we don't support any longer. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | | | | [svn-r27768] Description:Quincey Koziol2015-09-141-243/+255
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | | | [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-1/+1
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* | | | | [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-1/+1
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | available Fix tests accordingly
* | | | [svn-r27428] Bug fix: DAILYTEST-170Albert Cheng2015-07-241-0/+8
| |_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623). Solution: Reverse revisions r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro r26627: bring back WANT_DATA_ACCURACY configure macro which is used together with the above two macros. This also brings back the enable-dconv-accuracy configure option. Tested: h5committested. Also tested in ostrich using the XL compilers.
* | | [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-1/+1
| |/ |/| | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r26907] Check range and fix conversion issue of compound members in ↵Jerome Soumagne2015-04-231-9/+25
| | | | | | | | | | | | H5T_copy/H5T_set_loc Tested: local linux
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