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* [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-1/+1
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* [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-1/+1
| | | | | | available Fix tests accordingly
* [svn-r27428] Bug fix: DAILYTEST-170Albert Cheng2015-07-241-0/+8
| | | | | | | | | | | | | | | | | | | Description: XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623). Solution: Reverse revisions r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro r26627: bring back WANT_DATA_ACCURACY configure macro which is used together with the above two macros. This also brings back the enable-dconv-accuracy configure option. Tested: h5committested. Also tested in ostrich using the XL compilers.
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-1/+1
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26907] Check range and fix conversion issue of compound members in ↵Jerome Soumagne2015-04-231-9/+25
| | | | | | H5T_copy/H5T_set_loc Tested: local linux
* [svn-r26868] Remove accum_change assert in H5T for nowJerome Soumagne2015-04-211-2/+2
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* [svn-r26848] Fix warnings in H5TJerome Soumagne2015-04-201-31/+115
| | | | Tested: local linux
* [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-177/+177
| | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* [svn-r26625] Description:Quincey Koziol2015-03-271-4/+0
| | | | | | | | | | | Bring r26543 from autotools_rework branch to trunk: Remove the LLONG_TO_LDOUBLE_CORRECT macro/define, it's working around bugs in very old SGI/FreeBSD/Windows compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26623] Description:Quincey Koziol2015-03-271-4/+0
| | | | | | | | | | | Bring r26513 from autotools_rework branch to trunk: Remove the LDOUBLE_TO_LLONG_ACCURATE macro/define, it's working around bugs in older SGI, HP/UX, MacOSX and Windows .NET 2003 compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26606] Description:Quincey Koziol2015-03-261-2/+0
| | | | | | | | | | | Bring r26508 from autotools_rework branch to trunk: Remove HW_FP_TO_LLONG_NOT_WORKS macro/define, it was only addressing Windows .NET 2003 compiler issues. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26605] Description:Quincey Koziol2015-03-261-4/+2
| | | | | | | | | | | | | | Bring r26503 & r26528 from autotools_rework branch back to the trunk: Remove old platform configure files: craynv, dec-flags, hpux11.23, ia64-linux-gnu, nec-superux14.1, sv1-cray, x86_64-redstorm-linux-gnu Also remove CONVERT_DENORMAL_FLOAT, since this was only set in the configure files being removed. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26596] Description:Quincey Koziol2015-03-261-2/+0
| | | | | | | | | | | Bring r26499 from autotools_rework branch to trunk: Remove ULLONG_TO_FP_CAST_WORKS macro/define, as it only applies to older platforms we aren't supporting any longer. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for 2+ days)
* [svn-r26595] Description:Quincey Koziol2015-03-251-2/+0
| | | | | | | | | | | Bring r26494 from autotools_rework branch back to trunk: Remove the LDOUBLE_TO_UINT_ACCURATE macro/define, it was addressing problems with older Intel compilers on Linux that are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on branch for several days)
* [svn-r26591] Description:Quincey Koziol2015-03-251-2/+0
| | | | | | | | | | | | Bring r26492 from autotools_rework branch back to trunk: Remove the FP_TO_ULLONG_ACCURATE and FP_TO_ULLONG_RIGHT_MAXIMUM macros/defines, which were added to address problems with older PGI compilers and HP-UX systems and are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (daily tested on branch for >1 week)
* [svn-r26587] Description:Quincey Koziol2015-03-251-6/+0
| | | | | | | | | | | Bring r26489 from autotools_rework branch to trunk: Remove the ULONG_TO_FP_BOTTOM_BIT_ACCURATE macro/define, as it was added for SGI systems and old Solaris systems, which are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested for >1 week)
* [svn-r26560] Description:Quincey Koziol2015-03-241-14/+0
| | | | | | | | | | | Bring r26483 from autotools_rework branch back to trunk: Remove INTEGER_TO_LDOUBLE_ACCURATE macro/define - we no longer support SGI systems. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (daily tested on branch for >1 week)
* [svn-r26495] Description:Quincey Koziol2015-03-191-14/+0
| | | | | | | | | | Bring r26258 from the autotools_rework branch to the trunk - remove the LDOUBLE_TO_INTEGER_WORKS macro/define, which was addressing issues with SGI systems that are no longer supported. Tested on: Linux 2.6.x (jam) w/serial & parallel Daily tested on branch for >2 weeks
* [svn-r25496] Description:Quincey Koziol2014-07-301-8/+12
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25084] Description:Quincey Koziol2014-04-231-10/+5
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r24998] Description:Quincey Koziol2014-04-091-0/+4
| | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* [svn-r24255] Description:Quincey Koziol2013-10-041-1/+0
| | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* [svn-r24101] Description:Quincey Koziol2013-09-051-6/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r23938] remove "switch missing default case" in src.Mohamad Chaarawi2013-07-261-0/+8
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* [svn-r23713] Description:Quincey Koziol2013-05-211-37/+37
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23313] Description:Quincey Koziol2013-02-251-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/Debug, etc. (too minor to require h5committest)
* [svn-r22914] I checked in the conversion function H5T__conv_enum_numeric ↵Raymond Lu2012-10-171-0/+2
| | | | | | (numeric type means integer or floating number) and the C test for it. This is the work for Chicago. Tested on jam, koala, and ostrich.
* [svn-r22807] Description:Quincey Koziol2012-09-251-4/+2
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22749] Description:Dana Robinson2012-09-101-141/+192
| | | | | | | Undo of accidental check-in of H5T code in last check-in. Tested on: jam w/ parallel enabled (revert to pre-existing code)
* [svn-r22748] Description:Dana Robinson2012-09-101-192/+141
| | | | | | | H5FD_FLMAP_SINGLE changed to H5FD_FLMAP_DICHOTOMY in the MPI-POSIX VFD. Tested on: jam w/ parallel and fortran enabled (minor change)
* [svn-r22608] Description:Quincey Koziol2012-07-261-4/+9
| | | | | | | | | | | | | | | Switch propert list/class iteration from internal to external form of iteration, cleaning up and simplifying the code a bit. Bring other general improvements from plist_encode_decode branch back to trunk. Clean up many warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN (too minor to require h5committest)
* [svn-r22582] Description:Quincey Koziol2012-07-161-226/+262
| | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* [svn-r22287] Description:Quincey Koziol2012-04-161-228/+229
| | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22219] Description:Quincey Koziol2012-03-311-1/+2
| | | | | | | | Merge "file image" changes from feature branch back to trunk. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest upcoming)
* [svn-r21919] Description:Quincey Koziol2012-02-091-79/+80
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21734] Issue 7582 - The library allowed the conversion of strings ↵Raymond Lu2011-11-081-1/+1
| | | | | | between ASCII and UTF8. I corrected it by adding a condition check in H5T_conv_s_s and H5T_conv_vlen to report an error under this situation. Tested on jam, koala, linew.
* [svn-r21674] Issue 7618 - the library had seg fault when it tried to shrink ↵Raymond Lu2011-10-261-11/+13
| | | | | | | | the size of compound data type through H5Tset_size immedia tely after the type was created. I fixed it in this commit. Tested on jam, linew, and koala.
* [svn-r21152] Description:Quincey Koziol2011-07-281-0/+36
| | | | | | | | | | | | | | | | | | | | Further patches for Jira 7638, to ensure that H5D/Aget_type will be attached to the correct top file. (This change to the library should reverted when Jira 7638 is finally finished) Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r20872] Issue 7564 - Allow H5Tcreat to create string type (fixed-length ↵Raymond Lu2011-05-201-7/+25
| | | | | | and variable-length). I also added a test case in dtypes.c. Tested on jam and linew - relatively simple.
* [svn-r20691] Purpose: Fix problem exposed by external link cacheNeil Fortner2011-05-021-0/+5
| | | | | | | | | | | | | Description: When closing an object that had two open id's, the library would previously fail to account for the status of the "holding_file" field, potentially causing the file's "nopen_objs" field to become inconsistent. This caused problems when opening the same object twice through an external link using th external file cache. Modified the library to properly account for the status of the "holding_file" field when closing an object id, even when the underlying "shared" object isn't closed. Tested: jam, koala, heiwa (h5committest)
* [svn-r20121] Bug 1586 - the datatype handler created with H5Tencode/decode ↵Raymond Lu2011-02-181-1/+6
| | | | | | had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. Tested on jam, heiwa, and amani.
* [svn-r19398] Descriptino:Quincey Koziol2010-09-161-24/+24
| | | | | | | | | | | | | | | | | | | | | | | Clean up the internal usage H5I_dec_ref() to eliminate the sequence of flags that has been creeping in. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19363] When mandatory filter failed to write data chunks, the datasetRaymond Lu2010-09-091-13/+13
| | | | | | | couldn't close (bug 1260). The fix releases all resources and closes the dataset but returns a failure. Tested with h5committest - jam, heiwa, amani.
* [svn-r18702] Description:Quincey Koziol2010-05-051-11/+11
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18597] Description:Quincey Koziol2010-04-201-2/+2
| | | | | | | | | | | | | | | | | | | Fix missing NULL initialization of pointers. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode
* [svn-r18595] Description:Quincey Koziol2010-04-201-162/+175
| | | | | | | | Clean up compiler warnings Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18535] Purpose: Fix bug 1815Neil Fortner2010-04-081-6/+0
| | | | | | | | | | | Description: Attempting to copy an object with NULL references (all bytes zero) with the H5O_COPY_EXPAND_REFERENCE_FLAG flag set would cause a failure or an assertion (depending on whether it was in debug mode). Changed copy routine to detect NULL references (object and region) and avoid attempting to expand the reference in this case. Tested: jam, linew, amani (h5committest)
* [svn-r18460] Description:Quincey Koziol2010-03-261-1/+1
| | | | | | | | | | | | | | | | | | | Fold metadata journaling changes into the trunk: mostly tweaky small stuff, also removed the H5F_t* field from the H5G_entry_t struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18357] Description:Quincey Koziol2010-03-021-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18356 from metadata journaling merge branch to trunk: Converge metadata journaling branch with trunk with a bunch of v1 B-tree changes: - Remove H5ACprivate.h header from H5Bprivate.h header - Revise v1 B-tree client callbacks - Get rid of H5B_serialize() by bringing it into H5B_flush() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18197] Description:Quincey Koziol2010-01-301-4/+4
| | | | | | | | | Trim trailing whitespace from source code files with this command: find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//' Tested on: None - eyeballed only
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