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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Fix typos found in src/ subdirectory (#1983)luzpaz2022-08-101-1/+1
| | | Found via `codespell -q 3 -S ./release_docs,./bin/trace,./hl/tools/h5watch/h5watch.c,./tools/test/h5jam/tellub.c -L isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn\'t,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,minnum,ake,gord,numer,ro,oce`
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fixes for a couple of trivial warnings (#676)Dana Robinson2021-05-241-1/+0
| | | | | | | | | | | * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Purges UFAIL from the library (#637)Dana Robinson2021-05-111-6/+3
| | | | | | | | | * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)Sean McBride2021-03-091-1/+1
| | | | | | | | | | | | | * Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes Removes useless const declarations. * Fixed most readability-non-const-parameter warnings These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature. * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* Clang-format of source filesAllen Byrne2020-09-301-76/+62
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* remove unnecessary check macrokmu2019-12-061-2/+2
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* fix intel compile warningskmu2019-12-041-2/+2
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* Revert "fix warnings from Intel compiler"kmu2019-11-261-2/+2
| | | | This reverts commit 8b9338ab57eec0cc8fa5a36c44d7b28e52e9a466.
* Revert "fix issues from previous PR comments"kmu2019-11-261-2/+2
| | | | This reverts commit d242a900f420b040e364f6c0976c01593e955db3.
* Revert "using a different MACRO"kmu2019-11-261-5/+5
| | | | This reverts commit fc61b7a9f3a38331809ebcb6247482943947cdb8.
* using a different MACROkmu2019-11-251-5/+5
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* fix issues from previous PR commentskmu2019-11-251-2/+2
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* fix warnings from Intel compilerkmu2019-11-071-2/+2
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* Normalization with VOL integration branch.Dana Robinson2017-12-011-211/+184
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r30017] Description:Quincey Koziol2016-06-061-36/+31
| | | | | | | | | Bring warning cleanusp in r29990, 29993, 29997, 29999, 30004 from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production. (h5committest forthcoming)
* [svn-r27768] Description:Quincey Koziol2015-09-141-2/+2
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27129] Fix warnings in H5TbitJerome Soumagne2015-06-011-5/+7
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* [svn-r22287] Description:Quincey Koziol2012-04-161-49/+61
| | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r21919] Description:Quincey Koziol2012-02-091-10/+10
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21650] Changed unsigned int to size_t in several places for agreement ↵Dana Robinson2011-10-211-8/+8
| | | | | | with the input parameter. Quiets warnings from Visual Studio 2008. Trivial change but tested on 32-bit linux (jam), 64-bit linux (koala), 64-bit Solaris/Sun CC (linew), 64-bit Windows 7 (kituo) just to be safe.
* [svn-r19654] Description:Quincey Koziol2010-10-211-17/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity revisions from branch back to trunk, and clean up some other misc. compiler warnings also. r19500: Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in ohdr.c so the test never tries to close uninitialized locations. r19501: Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c. r19502: Fixed coverity issue 579 and some additional warnings in the file as well. r19503: Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26 r19504: minor mods to try to keep coverity from flagging false positives. r19505: Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (h5committested on trunk)
* [svn-r18625] Description:Quincey Koziol2010-04-231-252/+260
| | | | | | | | | | | | | | | | | | | | | | Checkpoint progress on Bz#1398 - strict aliasing issues. (Lots of compiler warnings & code cleanups also) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15510] Description:Quincey Koziol2008-08-211-71/+74
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12706] Description:Quincey Koziol2006-10-021-17/+18
| | | | | | | | | Clean up some of the warnings on 64-bit Linux... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) Too minor to require h5committest
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-1/+2
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-4/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-31/+31
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9857] Purpose: MaintenanceElena Pourmal2005-01-221-3/+0
| | | | | | | | | | | | | | Description: Removed PABLO from the source Solution: Platforms tested: arabica with 64-bit, copper with parallel, heping with GNU C and C++ and PGI fortran (but I disabled hl, there is some weird problem only on heping: F9XMODFLAG is not propagated to the Makefile files Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r8731] Purpose:Quincey Koziol2004-06-231-9/+4
| | | | | | | | | | | | | | | Code cleanup & minor optimization Description: Re-work the way interface initialization routines are specified in the library to avoid the overhead of checking for them in routines where there is no interface initialization routine. This cleans up warnings with gcc 3.4, reduces the library binary size a bit (about 2-3%) and should speedup the library's execution slightly. Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc34 h5committest
* [svn-r8383] Purpose:Quincey Koziol2004-04-181-1/+1
| | | | | | | | | | | | | Code cleanup Description: Clean up lots of warnings based on those reported from the SGI compilers as well as gcc. Platforms tested: SGI O3900, IRIX64 6.5 (Cheryl's SGI machine) FreeBSD 4.9 (sleipnir) w/ & w/o parallel h5committest
* [svn-r8348] Purpose: More testRaymond Lu2004-04-131-8/+12
| | | | | | | | Description: Add more tests for bittests.c to check bit operations like H5S_bit_shift, H5S_bit_inc, H5S_bit_dec, H5S_bit_neg. Platforms tested: h5committest
* [svn-r8344] Purpose: Internal function changeRaymond Lu2004-04-121-18/+23
| | | | | | | | Description: H5T_bit_shift wasn't general enough to handle arbitory start, length. Solution: Make it be so. Platforms tested: h5committest
* [svn-r8270] Purpose: code cleanupRaymond Lu2004-03-221-33/+0
| | | | | | | Description: took out function of older algorithm(H5T_bit_neg2). Platforms tested: fuss
* [svn-r8266] Purpose: Internal function changeRaymond Lu2004-03-191-4/+67
| | | | | | | | | Description: The algorithm of H5T_bit_neg wasn't general enough. Solution: Changed it to handle arbitory starting position and size in a bit sequence. Platforms tested: h5committest.
* [svn-r8265] Purpose: Code cleanupRaymond Lu2004-03-181-42/+0
| | | | | | | | Description: Some printing commands left there for debugging. Solution: Took them out. Platforms tested: fuss(RH8). Simple change
* [svn-r8264] Purpose: Internal algorithm changeRaymond Lu2004-03-171-4/+87
| | | | | | | | | Description: The H5T_bit_dec algorithm wasn't general enough. Solution: Changed it to handle bit sequence starting at any position and of any length. Platforms tested: h5committest
* [svn-r8259] *** empty log message ***Raymond Lu2004-03-131-7/+22
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* [svn-r8154] Purpose:Quincey Koziol2004-02-051-14/+21
| | | | | | | | | | | Code cleanup Description: Minor tweaks, cleanups & optimizations to new bit operation routines. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8153] *** empty log message ***Raymond Lu2004-02-041-2/+117
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* [svn-r8136] Purpose:Quincey Koziol2004-01-311-2/+2
| | | | | | | | | | | | | Optimization Description: Speed up various parts of the library by setting a global variable for the endianness of the machine at library startup and use that variable instead of repeatedly querying the endianness of the native int datatype. Platforms tested: IBM p690 (copper) too minor to require h5committest
* [svn-r7988] Purpose:Quincey Koziol2003-12-291-2/+0
| | | | | | | | | | | Bug fixes & code cleanup Description: Back out some of the debugging that was inadvertently checked in recently. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7984] Purpose: bug fixRaymond Lu2003-12-291-0/+2
| | | | | | | Description: VL datatype fails in certain way(hard to describe) Platforms tested: h5committest
* [svn-r7917] Purpose:Quincey Koziol2003-12-061-4/+4
| | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up compiler warnings, especially the 'FUNC' variable not used which comes out in production mode. Solution: Had to add a new FUNC_ENTER_NOAPI_NOINIT_NOFUNC macro for those non-API functions which don't need the 'FUNC' variable defined. (This will be _so_ much easier when C99 is standard on all our supposed platforms, since it has a __FUNC__ macro... ) Platforms tested: FreeBSD 4.9 (sleipnir) too minor for h5committest (although there were lots of files changed, the change was minor in each one)
* [svn-r7871] Purpose:Quincey Koziol2003-11-211-2/+0
| | | | | | | | | | | Code cleanup Description: Make some functions static and remove unused variables, etc. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
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