| Commit message (Collapse) | Author | Age | Files | Lines |
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Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library
tested on bb-8 with parallel and serial.
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checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
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Normalize against incoming changes from the phdf5_metadata_opt branch.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Normalize against changes on phdf5_metadata_opt branch to trunk
Tested on:
MacoSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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- allocate sieve buffer with calloc instead of malloc
tested with h5committest
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- fix bug in opending an already open named datatype.
- fix dynamically loaded VOL plugin support with new changes coming in.
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make a higher level wrapper object around all VOL objects that
includes the VOL information.
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plugin hid_t instead
- rework the private VL layer to use the class structure directly
- some bug fixes
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- add H5Iiterate callback type to trace
- other minor tweeks
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- uncomment tests to check error output in Makefiles.
- fix bug in native implementation of H5Aiterate.
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Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
(h5committest forthcoming)
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fix return type for H5T_committed in H5Tget_create_plist.
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plugin create the ID if the datatype is committed.
This makes it consistent with other get operations in the VOL that
return an ID.
Tested: Jam
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Tested: ummon (with prototype network plugin)
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herr_t H5VLget_object(hid_t obj_id, void **obj, H5VL_t **vol_plugin)
to retrieve object pointer from given ID. This also optionally returns a pointer to a vol_plugin if it is not NULL.
- remove the previously added routine to retrieve the VOL datatype object since the new one does that.
- add a MAX_LIB_VOL_VALUE that reserves 128 value for internal VOL plugins, not that we need that many.
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rerun reconfigure. All the other changes must be due to different autotools versions used before.
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VOL named datatype object pointer.
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Add VOL callback for H5T get routines
Update Native implementation
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- change hid_t req in callbacks to void **req
- change all callbacks to accept dxpl_ids (except dataset write and read which already do)
- update all the private and public VL routines to accept a dxpl_id and event queue id
- Add an async class for the VOL plugin with cancel, test, and wait request operations
- add the external VOL log plugin test to the examples directory
NOTE that async operations are still not provided by the HDF5 API, so
all event queue IDs and requests passed to all plugins are NULL for
now.
Tested on jam.
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is registered already in the class for each type
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ID with the VOL info on the upper level (API and iteration/visit routines)
- this fixes the bug exposed in H5Oopen with external log plugin
update the private VL registration routine to take an app_ref
update the datatype ID creation for the VOL to take an app_ref
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move ref count management on the VOL struct inside the VLint code
- H5Freopen still needs to be handled
create the public interface for VOL callbacks:
- unresolved issue with var_args
update and create new API fapl calls to support stacking drivers:
- need to add fapl copy callback
fix a memory leak with registration of external plugins
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move the dataset ID registration to H5Dint where the term_interface func is located
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- change how the vlose routine is registered with VOL IDs
- some bug fixes
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update get_type routines to construct a VOL datatype if the type is named
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the API level for the native implementation
- work on fixing the named datatype issue.. still not resolved
- branch still not stable and tests do not pass at this point
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modify datatype open and get_binary callbacks to be disjoint
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pointers and public VL structure instead of IDs.
tests will fail now because of named datatypes.
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ID, and
store the VOL plugin in an auxilary structure in the ID pointer.
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plugin to pass a NULL request
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Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward
the final design (as exemplified by the H5EA & H5FA code).
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & parallel
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add a public API routine to set a user defined VOL driver
some fixes to allow vol plugins to be created and used outside the library
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- add VOL implementation for H5O, H5D, and H5T functions
- update the VOL interface with H5VLget routines
- make upper level IDs of Type H5I_XXX_PUBLIC
- bug fixes
Comments:
- some routines still don't go through VOL but have a workaround so they don't have to at the moment.
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Add FUNC_ENTER macros for package-private routines and begin process of
switching package routines to use them. All H5G routines are currently
finished.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Bring [spirit of] r20393 from coverity branch back to trunk:
Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh
Tested on:
Mac OS X/64 10.7.3 (amazon) w/debug, production & parallel
(too minor to require h5commitest)
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Bring Coverity changes back to trunk:
r20276:
Add recursive is vlen string function.
Cleanup resource leaks for issues: 200,202,329,688,811,812
r20277:
Check types and close by adding error section: issue 687
r20278:
Replaced implicit pointer conversion with (ocrt_info.new_obj != NULL).
r20280:
Addressed coverity issues 927-929 & 583. The real issue is failure to check
file name length -- at least at the H5FD interface level. This needs more work, but at least I have dealt with the issue in H5FDfamily.c
r20337:
H5O_type_t obj_type = H5O_TYPE_UNKNOWN;
r20338:
Added udata.name = NULL; to prevent potential uninitialized use after done: label.
r20339:
coverity issues: 686,828,1670-1673,1707-1711
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
FreeBSD/32 8.2 (loyalty) w/gcc4.6, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
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Address issue with object headers being created getting evicted from
the metadata cache cache before they are completely initialized. This is
done by pinning the object header in the cache until it is completely
initialized and attached to a group.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.4 (amazon) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
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