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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-27/+20
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| * [svn-r29612] Description:Quincey Koziol2016-04-031-1/+1
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-4/+4
| | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-5/+5
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28916] Description:Quincey Koziol2016-01-151-18/+9
| | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28894] Description:Quincey Koziol2016-01-141-3/+5
| | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-33/+8
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-33/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-2/+3
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| * [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-1/+1
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* | [svn-r26724] - merge from trunk & fix conflicts.Mohamad Chaarawi2015-04-031-2/+2
|\ \ | |/ | | | | | | - fix bug in opending an already open named datatype. - fix dynamically loaded VOL plugin support with new changes coming in.
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-152/+119
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-12/+25
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-12/+12
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* | [svn-r25481] - remove unsigned char * from traceMohamad Chaarawi2014-07-241-2/+2
| | | | | | | | | | - add H5Iiterate callback type to trace - other minor tweeks
* | [svn-r25476] - fix error output in several places.Mohamad Chaarawi2014-07-231-1/+1
| | | | | | | | | | - uncomment tests to check error output in Makefiles. - fix bug in native implementation of H5Aiterate.
* | [svn-r25456] fixing a few things and more realignment with trunk.Mohamad Chaarawi2014-07-211-12/+8
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* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-1/+1
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| * [svn-r25084] Description:Quincey Koziol2014-04-231-1/+1
| | | | | | | | | | | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* | [svn-r24701] merge from trunk to 24700.Mohamad Chaarawi2014-02-131-1/+1
|\ \ | |/ | | | | fix return type for H5T_committed in H5Tget_create_plist.
* | [svn-r24381] Update VOL implementation for H5Tget_create_plist to have the VOLMohamad Chaarawi2013-10-311-19/+14
| | | | | | | | | | | | | | | | | | plugin create the ID if the datatype is committed. This makes it consistent with other get operations in the VOL that return an ID. Tested: Jam
* | [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-8/+8
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* | [svn-r23919] Modify H5Tcommitted to work with VOL plugins.Neil Fortner2013-07-181-5/+5
| | | | | | | | Tested: ummon (with prototype network plugin)
* | [svn-r23907] - add a new routine:Mohamad Chaarawi2013-07-161-33/+0
| | | | | | | | | | | | | | | | | | herr_t H5VLget_object(hid_t obj_id, void **obj, H5VL_t **vol_plugin) to retrieve object pointer from given ID. This also optionally returns a pointer to a vol_plugin if it is not NULL. - remove the previously added routine to retrieve the VOL datatype object since the new one does that. - add a MAX_LIB_VOL_VALUE that reserves 128 value for internal VOL plugins, not that we need that many.
* | [svn-r23887] add the VOL error code to H5err.txtMohamad Chaarawi2013-07-111-0/+1
| | | | | | | | rerun reconfigure. All the other changes must be due to different autotools versions used before.
* | [svn-r23836] fix bug in public API of H5Tget_vol_named_typeMohamad Chaarawi2013-06-271-2/+2
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* | [svn-r23835] add a new API routine H5Tget_vol_named_type that retrieves the ↵Mohamad Chaarawi2013-06-271-2/+34
| | | | | | | | VOL named datatype object pointer.
* | [svn-r23803] Add VOL callback for H5AiterateMohamad Chaarawi2013-06-211-8/+9
| | | | | | | | | | Add VOL callback for H5T get routines Update Native implementation
* | [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-10/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* | [svn-r22596] minor thingsMohamad Chaarawi2012-07-231-1/+17
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* | [svn-r22587] update the H5I_register_aux to not take the free routine, as it ↵Mohamad Chaarawi2012-07-171-2/+2
| | | | | | | | is registered already in the class for each type
* | [svn-r22565] change OH id registration to original way, and re-register the ↵Mohamad Chaarawi2012-07-121-4/+4
| | | | | | | | | | | | | | | | ID with the VOL info on the upper level (API and iteration/visit routines) - this fixes the bug exposed in H5Oopen with external log plugin update the private VL registration routine to take an app_ref update the datatype ID creation for the VOL to take an app_ref
* | [svn-r22549] Mohamad Chaarawi2012-07-101-11/+0
| | | | | | | | | | | | | | | | | | | | move ref count management on the VOL struct inside the VLint code - H5Freopen still needs to be handled create the public interface for VOL callbacks: - unresolved issue with var_args update and create new API fapl calls to support stacking drivers: - need to add fapl copy callback fix a memory leak with registration of external plugins
* | [svn-r22532] fix more named datatype issues.Mohamad Chaarawi2012-07-091-10/+17
| | | | | | | | move the dataset ID registration to H5Dint where the term_interface func is located
* | [svn-r22523] - rework how IDs for VOL objects are createdMohamad Chaarawi2012-07-061-36/+3
| | | | | | | | | | - change how the vlose routine is registered with VOL IDs - some bug fixes
* | [svn-r22513] fix some committed datatype issuesMohamad Chaarawi2012-07-031-13/+8
| | | | | | | | update get_type routines to construct a VOL datatype if the type is named
* | [svn-r22511] - remove the internal file type and use the file ID created at ↵Mohamad Chaarawi2012-07-031-13/+28
| | | | | | | | | | | | | | the API level for the native implementation - work on fixing the named datatype issue.. still not resolved - branch still not stable and tests do not pass at this point
* | [svn-r22502] implement named datatypes solution in object headersMohamad Chaarawi2012-06-291-6/+72
| | | | | | | | modify datatype open and get_binary callbacks to be disjoint
* | [svn-r22501] change the interface callbacks for the VOL to use objects ↵Mohamad Chaarawi2012-06-281-12/+184
| | | | | | | | | | | | pointers and public VL structure instead of IDs. tests will fail now because of named datatypes.
* | [svn-r22395] remove the high level ID implementation that wraps the actual ↵Mohamad Chaarawi2012-05-231-23/+5
| | | | | | | | | | | | ID, and store the VOL plugin in an auxilary structure in the ID pointer.
* | [svn-r22306] add a request id to each of the VOL callbacks and update the nativeMohamad Chaarawi2012-04-201-2/+2
| | | | | | | | plugin to pass a NULL request
* | [svn-r22297] merge from trunkMohamad Chaarawi2012-04-181-6/+6
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| * [svn-r22287] Description:Quincey Koziol2012-04-161-6/+6
| | | | | | | | | | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* | [svn-r22292] remove unnecessary lookup for object locations into VOLMohamad Chaarawi2012-04-171-1/+1
| | | | | | | | | | add a public API routine to set a user defined VOL driver some fixes to allow vol plugins to be created and used outside the library
* | [svn-r22119] Changes:Mohamad Chaarawi2012-03-221-58/+9
|/ | | | | | | | | | | - add VOL implementation for H5O, H5D, and H5T functions - update the VOL interface with H5VLget routines - make upper level IDs of Type H5I_XXX_PUBLIC - bug fixes Comments: - some routines still don't go through VOL but have a workaround so they don't have to at the moment.
* [svn-r21923] Description:Quincey Koziol2012-02-101-5/+5
| | | | | | | | | Add FUNC_ENTER macros for package-private routines and begin process of switching package routines to use them. All H5G routines are currently finished. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21919] Description:Quincey Koziol2012-02-091-13/+13
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21917] Description:Quincey Koziol2012-02-081-1/+1
| | | | | | | | | | Bring [spirit of] r20393 from coverity branch back to trunk: Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh Tested on: Mac OS X/64 10.7.3 (amazon) w/debug, production & parallel (too minor to require h5commitest)
* [svn-r20539] Description:Quincey Koziol2011-04-181-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes back to trunk: r20276: Add recursive is vlen string function. Cleanup resource leaks for issues: 200,202,329,688,811,812 r20277: Check types and close by adding error section: issue 687 r20278: Replaced implicit pointer conversion with (ocrt_info.new_obj != NULL). r20280: Addressed coverity issues 927-929 & 583. The real issue is failure to check file name length -- at least at the H5FD interface level. This needs more work, but at least I have dealt with the issue in H5FDfamily.c r20337: H5O_type_t obj_type = H5O_TYPE_UNKNOWN; r20338: Added udata.name = NULL; to prevent potential uninitialized use after done: label. r20339: coverity issues: 686,828,1670-1673,1707-1711 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode FreeBSD/32 8.2 (loyalty) w/gcc4.6, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r19587] Description:Quincey Koziol2010-10-131-1/+16
| | | | | | | | | | | | | | | | | | | | | | | | | Address issue with object headers being created getting evicted from the metadata cache cache before they are completely initialized. This is done by pinning the object header in the cache until it is completely initialized and attached to a group. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode