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* [svn-r18625] Description:Quincey Koziol2010-04-231-1/+1
| | | | | | | | | | | | | | | | | | | | | | Checkpoint progress on Bz#1398 - strict aliasing issues. (Lots of compiler warnings & code cleanups also) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17760] Purpose: Fix problem with H5TB APINeil Fortner2009-10-271-0/+2
| | | | | | | | | | | Description: The H5TB API makes some improper assumptions about the order of compound datatype members. Namely, it assumes that members remain in the order in which they were inserted. Unfortunately, this assumption is inherent in the design of the interface. The library has been patched so that this assumption holds in situations relevant to H5TB. Tested: jam, linew, amani (h5committest)
* [svn-r17392] I added a detection for the correctness of converting from ↵Raymond Lu2009-08-201-2/+10
| | | | | | | | | | unsigned long to float in the configure.in. The Pathscale compiler on Sandia's Linux machine misinterprets the values of unsigned long as negative during the conversion to float, when the first bit of unsigned long is on. Tested on jam. Need to test it on Sandia's machine.
* [svn-r15682] Purpose: fix bug 1298Neil Fortner2008-09-221-2/+2
| | | | | | | | | | | Description: The optimized "subset" compound conversion function would improperly copy the "blank" space at the end of compound types. Modified H5T_conv_struct_init to detect when the subset type has extra space at the end, and calculate the size of the data that should be copied into the conversion buffer for each element. Changes to the functions that implement these conversions. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15609] Description:Quincey Koziol2008-09-101-17/+23
| | | | | | | | Omnibus compiler warning cleanup & some reformatting also. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15227] Description:Quincey Koziol2008-06-171-3/+3
| | | | | | | | | | | | | | | | | | Small clean up of datatype copying. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.3 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14208] Description:Quincey Koziol2007-10-181-7/+0
| | | | | | | | | | | | | | | | | | | | Make H5Pget_filter_by_id() API versioned and switch internal usage to H5Pget_filter_by_id2(). Add simple regression test for H5Pget_filter_by_id1(). Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14004] Description:Quincey Koziol2007-07-241-12/+67
| | | | | | | | | | | | Fix problem with datatype messages where the version of the format for a datatype message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r13917] Description:Quincey Koziol2007-06-261-1/+0
| | | | | | | | | Code & warning cleanups Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13884] The second step of optimization for compound data for the ChicagoRaymond Lu2007-06-191-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | company. The I/O is optimized when the source and destination members are a subset of each other one way or another, and the order is the same, and no conversion is needed. For example: struct source { struct destination { TYPE1 A; --> TYPE1 A; TYPE2 B; --> TYPE2 B; TYPE3 C; --> TYPE3 C; }; TYPE4 D; TYPE5 E; }; or struct destination { struct source { TYPE1 A; --> TYPE1 A; TYPE2 B; --> TYPE2 B; TYPE3 C; --> TYPE3 C; }; TYPE4 D; TYPE5 E; }; The optimization is simply moving data from the source to the appropriate places in the buffer and bypass the reading of the background data and data conversion. Tested on smirom, liberty, sol, and copper.
* [svn-r13753] Description:Quincey Koziol2007-05-141-1/+1
| | | | | | | | | | | | | Check in "unique, but sharable" optimization to ISOHM code, which allows object header messages that are only used in one object to remain in the sole user's header, but migrates messages that are used in more than one header into the ISOHM heap. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13636] Description:Quincey Koziol2007-04-111-1/+11
| | | | | | | | | | | | | | Change H5[D|G|T]<foo>_expand() "temporary" API routines to H5[D|G|T]<foo>2() "versioned" routines. Also added H5[D|G|T](create|commit)_anon() routines to continue to allow "anonymous" objects to be created in a file. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13240] Description:Quincey Koziol2007-02-051-1/+1
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13156] Description:Quincey Koziol2007-01-191-3/+4
| | | | | | | | | Begin refactoring code to straighten out the contorted code that handles shared messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13121] Description:Quincey Koziol2007-01-081-1/+0
| | | | | | | | | | Add support & tests for using shared datatypes with shared & un-shared attributes. Involves some fairly icky code to make the "copy on write" paradigm for shared attributes work. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12949] Description:Quincey Koziol2006-11-201-4/+4
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12904] Description:Quincey Koziol2006-11-131-5/+5
| | | | | | | Clean up warnings from undefined macros... Tested on: Linux/64 2.6 (chicago2)
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-4/+2
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12736] Description:Quincey Koziol2006-10-091-5/+4
| | | | | | | | | | | | | | | | | | | Add "use the latest format" support for dataspace object header encode/ decode routines and clean up format a bit for the latest format (new to 1.8.x releases) Remove storing 'perm' parameter for array datatypes in memory and the file, and add test to make certain that if any user applications are attempting to store them, we get some reports back. (Should be unlikely, since the RefMan says that the parameter is not implemented and is unsupported). Carry those changes into the tests, etc. Clean up a bunch more compiler warnings. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-1.6-compat
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-12/+12
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12435] Purpose: Bug fixRaymond Lu2006-06-231-2/+11
| | | | | | | | | | | | Description: Mac OS 10.4 on PowerPC chip has some errors to convert (unsigned) long long to long double. When the bit sequences are 0x003ff..., 0x007fff..., 0x00ffff..., 0x01ffff..., 0x7fffff..., the converted values are twice as big as they should be. Solution: Detect the error in configure and disable the compiler conversion and test case. Platforms tested: h5committest, Mac OS 10.4, and fuss.
* [svn-r12425] Purpose: Bug fixRaymond Lu2006-06-201-6/+7
| | | | | | | | | | | | | | | Description: Data conversion from long double to (unsigned) long long returns some incorrect values on Mac OS 10.4 and SGI IRIX64 6.5. The conversions start to go wrong when the long double is 20041683600089727.779961 (0x4351ccf385ebc8a0bfcc2a...). If adjusting the values higher by assigning 0x...c8a0cf... or 0x...c8a0df..., the converted values go wild. Solution: Detect this error in configure.in and disable compiler conversions from long double to (unsigned) long long for Mac OS 10.4 and IRIX64 6.5. Platforms tested: h5committest, Mac OS 10.4, and IRIX64 6.5.
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-3/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11384] Purpose:Quincey Koziol2005-09-121-0/+1
| | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Merge back changes from "compact group" work that improve the infrastructure of the library and may impact others. In this round of merging, that includes: - Move datatype allocation into single internal routine, instead of duplicated code that was spread out in a dozen or so places. - Clean up guts of object header routines (H5O_*) to allow for some of the fancieroperations that need to be performed on groups, along with some general improvements. - Added a new error code - Some minor cleanups in other code.... Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Mac OS X
* [svn-r11332] Purpose: Minor Change to Macro NamesRaymond Lu2005-09-011-26/+26
| | | | | | | | | Description: Changed the names of macros defined in H5Tpkg.h from H5T_CONV_INTERIM_XXX_XXX to H5T_CONV_INTERNAL_XXX_XXX to be more descriptive. Platforms tested: fuss - simple change
* [svn-r11317] Purpose: Minor change to macro namesRaymond Lu2005-08-301-13/+13
| | | | | | | | | | | | Description: Changed the names of the interim macros for data conversion checked in yesterday from the SOURCE_DESTINATION style (like FP_FP or LDOUBLE_LLONG) to the H5T_CONV_INTERIM_SOURCE_DESTINATION style (like H5T_CONV_INTERIM_FP_FP OR H5T_CONV_INTERIM_LDOUBLE_LLONG), to be more descriptive. These macros are defined in H5Tpkg.h and used in H5Tconv.c and H5T.c for interim purpose. Platforms tested: fuss - simple change.
* [svn-r11311] Purpose: New features.Raymond Lu2005-08-291-0/+96
| | | | | | | | | | | | | | | | | | | | Description: Added 2 new configure options, --enable-exception and --enable-accuracy. --enable-exception lets the library check whether user's exception handling functions are present during compiler data conversions and use them if they are. When it's disabled, this step is skipped to improve conversion speed. This step isn't implemented yet for soft conversions because there would be little gain in speed. --enable-accuracy guarantees data accuracy during data conversions. It means the library will choose compiler conversions only if the accurate data is secured. Otherwise, the library will go for the library's own conversions. If this option is disabled, the library uses compiler conversions in favor of their speed as long as they work even if data can be incorrect. Platforms tested: h5committest and fuss. Some systems may fail after this checkin.
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-2/+2
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11144] Purpose:Quincey Koziol2005-07-231-0/+6
| | | | | | | | | | | New port Description: Elena asked me to check in her NEC SX-6 work, so here it is! :-) Platforms tested: FreeBSD 4.11 (sleipnir) NEC SX-6 (by Elena)
* [svn-r10919] Purpose: Take Out An Unused FunctionRaymond Lu2005-06-141-6/+0
| | | | | | | | | | | Description: Data conversion function H5T_conv_i32le_f64le() was unused. Because we have new conversion functions for integers and floating numbers, this old function is taken out. Platforms tested: fuss - simple change. Misc. update:
* [svn-r10238] Purpose:Quincey Koziol2005-03-201-1/+1
| | | | | | | | | | | | | | | | Optimization Description: Speed up I/O on enumerated datatypes (including those nested in compound datatypes, arrays, etc.) if the destination datatype is a proper superset of the source datatype. Solution: Detect the situation and treat as no-op datatype conversion. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10087] Purpose: New feature and testRaymond Lu2005-02-251-3/+20
| | | | | | | | | | | Description: Somehow, the hardware conversions between "long double" and other native floating-point types were left out. Solution: Added the hardware conversion functions in H5Tconv.c and test cases in dtypes.c. Platforms tested: h5committest and fuss. Misc. update: updated MANIFEST to replace bin/reconfigure.sh with bin/reconfigure
* [svn-r9984] Purpose: New feature and testRaymond Lu2005-02-101-0/+103
| | | | | | | | | | Description: Added support of hardware conversion between "long double" and integers(mainly in H5Tconv.c) and some test cases(mainly in test/dtypes.c). Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-8/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9469] Purpose:Quincey Koziol2004-10-271-3/+3
| | | | | | | | | | | | | Code cleanup Description: Clear up some inconsistencies, inefficiencies and possible errors between the release and development branch. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Linux 2.4 (heping) w/C++ & FORTRAN
* [svn-r9445] Purpose: Bug fixRaymond Lu2004-10-211-4/+4
| | | | | | | | | | | Description: "char" was considered as always "signed char" in data type conversion. However, ISO C leaves the definition of "char" to individual implementation. i.e. for IBM AIX C compiler, it's treated as "unsigned char". Solution: Changed all "char" to "signed char". Don't even do "char" anymore because its definition is up to each vendor. Platforms tested: h5committest
* [svn-r9375] Purpose:Quincey Koziol2004-10-061-0/+1
| | | | | | | | | | | | | Bug fix Description: Close a couple of memory leaks Platforms tested: FreeBSD 4.10 (sleipnir) Solaris 2.7 (arabica) w/purify Linux 2.4 (verbena) too minor for h5committest
* [svn-r9350] *** empty log message ***Raymond Lu2004-10-011-0/+1
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* [svn-r9329] James Laird2004-09-281-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Feature Description: Datatypes and groups now use H5FO "file object" code that was previously only used by datasets. These objects will hold a file open if the file is closed but they have not yet been closed. If these objects are unlinked then relinked, they will not be destroyed. If they are opened twice (even by two different names), both IDs will "see" changes made to the object using the other ID. When an object is opened using two different names (e.g., if a dataset was opened under one name, then mounted and opened under its new name), calling H5Iget_name() on a given hid_t will return the name used to open that hid_t, not the current name of the object (this is a feature, and a change from the previous behavior of datasets). Solution: Used H5FO code that was already in place for datasets. Broke H5D_t's, H5T_t's, and H5G_t's into a "shared" struct and a private struct. The shared structs (H5D_shared_t, etc.) hold the object's information and are used by all IDs that point to a given object in the file. The private structs are pointed to by the hid_t and contain the object's group entry information (including its name) and a pointer to the shared struct for that object. This changed the naming of structs throughout the library (e.g., datatype->size is now datatype->shared->size). I added an updated H5Tinit.c to windows.zip. Platforms tested: Visual Studio 7, sleipnir, arabica, verbena Misc. update:
* [svn-r8731] Purpose:Quincey Koziol2004-06-231-1/+0
| | | | | | | | | | | | | | | Code cleanup & minor optimization Description: Re-work the way interface initialization routines are specified in the library to avoid the overhead of checking for them in routines where there is no interface initialization routine. This cleans up warnings with gcc 3.4, reduces the library binary size a bit (about 2-3%) and should speedup the library's execution slightly. Platforms tested: FreeBSD 4.10 (sleipnir) w/gcc34 h5committest
* [svn-r8683] Purpose:Quincey Koziol2004-06-141-193/+185
| | | | | | | | | | | | | Code optimization Description: Use 'size_t' instead of 'hsize_t' to track the number of elements in memory buffers, especially for type conversion. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8670] Purpose:Quincey Koziol2004-06-131-0/+2
| | | | | | | | | | | | | Code optimization Description: Avoid a memory copy by directly reading from the variable-length sequence buffer when there is no type conversion on the way to disk. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8507] Purpose:Quincey Koziol2004-05-121-0/+1
| | | | | | | | | | | | | | | | | Code optimization Description: Eliminate many redundant lookups to check for no-op type conversion by remembering that a type conversion path is the no-op path. Also, don't allow non-no-op conversions which happen to be no-ops on a particular machine (such as int<->long conversions on machines where int and long are the same size and format, etc.) to replace the default no-op conversion. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8427] Purpose:Quincey Koziol2004-04-281-0/+2
| | | | | | | | | | | | | | | | Bug fix (sorta) Description: Add hack to allow the MS Visual Studio 6 compiler to build the library. It cannot cast unsigned long long values to float or double values. So, add another configuration macro to disable this conversion in the library. Just the "hardware" conversion is disabled, so the library will still correctly convert unsigned long long to float and double values, it will just happen more slowly with the "software" conversion routine. Platforms tested: FreeBSD 4.9 (sleipnir) with "Windows" setting faked inappropriate for h5committest
* [svn-r8424] *** empty log message ***Raymond Lu2004-04-271-3/+0
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* [svn-r8416] Purpose:Quincey Koziol2004-04-241-2/+2
| | | | | | | | | | | | | Code cleanup Description: Reduce warnings w/PC-Lint in various ways Platforms tested: PC-Lint too minor to require h5committest Misc. update:
* [svn-r8412] Purpose:Quincey Koziol2004-04-231-3/+3
| | | | | | | | | | | Code cleanup Description: Run lint on module Platforms tested: PC-Lint Too minor to require h5committest
* [svn-r8344] Purpose: Internal function changeRaymond Lu2004-04-121-1/+1
| | | | | | | | Description: H5T_bit_shift wasn't general enough to handle arbitory start, length. Solution: Make it be so. Platforms tested: h5committest
* [svn-r8270] Purpose: code cleanupRaymond Lu2004-03-221-1/+0
| | | | | | | Description: took out function of older algorithm(H5T_bit_neg2). Platforms tested: fuss
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