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* Merge UG from 1.10 and add prelim vol section (#1980)Allen Byrne2022-08-091-1/+1
| | | | | | | * Merge UG from 1.10 and add prelim vol section * Spelling fixes * Merge format and autotools javadoc from 1.10
* 1.12 New References for Dimension Scales (#1139) (#1574)Larry Knox2022-04-021-0/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * New references for Dimension Scale APIs (#1139) * Enable usage of new-style references with dimension scale APIs * Add API to check if an object ID represents a native connector object * Modified code to use new function H5DSwith_new_ref to determine if new references should be used with Dimension Scales. The new function return TRUE if non-native connector is used or if H5_DIMENSION_SCALES_WITH_NEW_REF varible is define at configure time (--enable-dimension-scales-with-new-ref). Tested on jelly. ToDo: generate testing file on BE system and enable the test; add flag to CMake; test netCDF-4 with the new references. * Adding new test files generated on BE system (hedgehog) created by 32 and 64-bit library. test_ds chokes on test_ds_le_new_ref.h5 on BE system; test passes for test_ds_be_new_ref-32bit.h5 for the 32-bit library and fails for the 64-bit library, and vice versa. I am checking the files for further investigation; but current implementation of the new references is not portable between LE and BE systems, and 32 and 64-bit systems. * Minor fixes for testing issues * Update test_ds.c Enabled broken test; tests pass now. * Update RELEASE.txt Documented new option to use new references with the HDF5 dimension scales APIs (H5DS*). * Update MANIFEST for new 32-bit new-style references test file for H5DS APIs * Update 'dimension scales w/ new-style refs' feature based on review Co-authored-by: Elena <epourmal@hdfgroup.org> * Fix H5DS warnings related to new H5DSwith_new_ref and H5VLobject_is_native APIs (#1184) Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Elena <epourmal@hdfgroup.org>
* 1.12 Merge doxygen changes from develop (#1542)Allen Byrne2022-03-301-1/+1
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* Hdf5 1 12 doxygen merge (#615)Allen Byrne2021-05-041-8/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings Remove more underscores from header guards * Merge #380 from develop * Correct date entry * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * Some Javadoc warning fixes * Committing clang-format changes * Updated javadoc fixes * HDFFV-11228/9 merges from develop * remove obsolete debug comment * Fix conflict * HDFFV-11229 merge changes from develop * HDFFV-11229 merge second compare from develop * HDFFV-11229 fix reference file * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * Update with changes from develop * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Whitespace changes * Rework CMake add_custom to use the BYPRODUCTS argument * Revert CMake configure checks for round defines * With VS 2015 minimum strdup is supported * Doxygen comments merged from develop * doxygen build updates * Correct version string for map functions Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* 1 12 merges from develop (#412)Allen Byrne2021-03-031-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version * Merge workflow and minor changes from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge serval small changes from dev * fix typo * Minor non-space formatting changes * GH #386 copyright corrections for java folder * revert because logic requires false return * Merges from develop #358 patches from vtk #361 fix header guard spelling * Remove case statement for H5I_EVENTSET * Correct call with versioning * Remove tabs * Double underscore change
* Update URL in source file Copyright headers for web copy of COPYINGLarry Knox2021-02-201-1/+1
| | | | file - src and test directories.
* 1 12 Whitespace changes after clang-format run (#288)Allen Byrne2021-01-291-13/+13
| | | | | | | | | | | | | | | | | | | | | * OESS-98 fix tools test for plugins * sync fork * Merge of changes from dev * Move problem option to bottom of the list until fixed * HDFFV-11106 - fix parsing optional args * HDFFV-11106 add note * grammer fix * Whitespace after clang formatting * Undo format version 11 changes * Update check to working version
* Merge VOL framework versioning to 1.12 (#154)Quincey Koziol2020-12-101-0/+11
| | | | | * Enforce VOL framework version compatibility when registering connectors. Also add a version for the connector itself, some refactoring on the register calls, and move the logic for matching / rejecting a VOL connector class from the plugin module to the VOL module. (#151) * Revise VOL framework version compatibility for the 1.12 release branch
* Basic alignment with async branch (#115) (#137)Quincey Koziol2020-11-301-13/+13
| | | | | | | * Basic alignment with async branch - trivial changes to reduce clutter in overall diff. * Update minor error code to reflect change within library * Update the error output to match library
* Merge available RM doxygen from develop to hdf5 1 12 (#131)Larry Knox2020-11-261-24/+263
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. * First cut of the H5 public API documentation. (#80) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Full set of current H5F documentation. (#105) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Migrated documentation for SWMR functions. * Catching up on MDC functions. * Integrated the H5F MDC function documentation. * Added MDC and parallel H5F functions. * Slightly updated main page. * Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST. * Doxygen - added (mostly) beginner functions (#112) * Doxygen - added (mostly) beginner functions * Removed duplicate H5Pset_szip function * Add src/H5module.h to MANIFEST. Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com>
* Source formattedAllen Byrne2020-10-011-37/+33
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* Sync with developDana Robinson2020-08-011-0/+19
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* Whitespace cleanupAllen Byrne2020-05-131-2/+0
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* Introduce new H5VL _by_value routinesJordan Henderson2020-01-291-5/+4
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-191-1/+2
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* Cherry pick of 0225e6d5969Quincey Koziol2020-01-041-8/+16
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* Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2020-01-041-2/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* Merge branch 'develop' into vol_dev_headersDana Robinson2019-06-141-1/+1
|\ | | | | | | | | Also moved the wrapper functions from the H5VLconnector.h to H5VLconnector_passthru.h
| * Merge pull request #1727 in HDFFV/hdf5 from ↵Dana Robinson2019-06-131-1/+2
| |\ | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:H5Fdelete_vol_only to develop * commit 'bb5e7822f447b8a175e807e2e7bad5e0192394e5': Fixed an error string typo Added H5Fdelete call and VOL support (but no VFD/native implementation).
| | * Added H5Fdelete call and VOL support (but no VFD/native implementation).Dana Robinson2019-06-111-1/+2
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| * | Merge pull request #1708 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:H10621 to developScot Breitenfeld2019-06-121-1/+1
| |\ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0742c15fca95965ed4eb87c6d54f41bb07bd4526': makefile clean-up move the vol_info to an optional parameter added H5Pset_vol added vol connector added test for vol_connector removed H5VL constants removed VOLL NULL connector and replaced it with native VOL added connector_name test added missing files add tests added more tests added missing files Implemented VOL APIs and C constants, no tests Implemented VOL APIs and C constants, no tests initial API impl.
| | * Merge branch 'develop' into H10621M. Scot Breitenfeld2019-04-241-0/+7
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| | * \ Merge branch 'develop' into H10621M. Scot Breitenfeld2019-03-071-28/+45
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| | * | | Implemented VOL APIs and C constants, no testsScot Breitenfeld2018-12-071-1/+1
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* | | | | Split VOL connector routines into separate headers:Dana Robinson2019-05-241-476/+15
|/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * H5VLconnector.h for terminal connector things * H5VLconnector_passthru.h for passthrough connector things Note that these headers are arranged such that they are included in hdf5.h so VOL connectors only need to include that. The separation into multiple headers is mainly for readability.
* | | | Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAMEJerome Soumagne2019-05-231-1/+1
| | | | | | | | | | | | | | | | Implement native H5VL_OBJECT_GET_NAME by addr
* | | | Refactor group creation parameters to take them out of the group creationQuincey Koziol2019-04-251-5/+2
| | | | | | | | | | | | | | | | property list and pass them as normal function parameters.
* | | | Refactor link creation parameters from being passing as properties in theQuincey Koziol2019-04-251-10/+2
| | | | | | | | | | | | | | | | link creation property list to vararg function parameters.
* | | | Refactor attribute creation parameters to move parameters out of creationQuincey Koziol2019-04-251-7/+3
| | | | | | | | | | | | | | | | property list and into function parameters.
* | | | Refactor dataset creation parameters out of the dataset creation propertyQuincey Koziol2019-04-251-7/+3
| |_|/ |/| | | | | | | | list and pass them as regular function parameters.
* | | Add an 'unwrap' VOL callback, so that connectors can unwrap an underlyingQuincey Koziol2019-04-211-0/+2
| | | | | | | | | | | | object without closing it. (Especially needed for pass-through connectors)
* | | Add H5Fget_fileno() API routine.Quincey Koziol2019-04-121-0/+1
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* | | Add API routines to retrieve, restore, reset, and free library state.Quincey Koziol2019-03-111-0/+4
| |/ |/| | | | | | | | | (Primarily for use in the async VOL connector, which has to schedule API operations for future execution and then restore the state of the library when the operation actually executes)
* | Revise "management" VOL callbacks into 'info' and object 'wrap / retrieval'Quincey Koziol2019-02-231-24/+38
| | | | | | | | classes.
* | Add ID type (of eventual hid_t) to the VOL "wrap" callback.Quincey Koziol2019-02-071-2/+4
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* | Add API routines to wrap and retrieve objectsQuincey Koziol2019-01-111-0/+2
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* | Move H5Fset_dset_no_attrs_hint VOL operations to native.Jacob Smith2018-12-181-2/+1
| | | | | | | | | | Move minimzied object header tests from separate file to test/ohdr.c Some formatting changes.
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-181-2/+1
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| * | Remove H5VL_FILE_CACHE_VOL_CONN from file specific callbacks, as it turns outQuincey Koziol2018-12-171-2/+1
| |/ | | | | | | | | | | not to be necessary. Also, correct _MSC_VER #ifdef
* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-1/+2
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* Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value.Quincey Koziol2018-11-291-1/+2
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* Switch H5VL_class_value_t from enum to unsigned integerQuincey Koziol2018-11-291-30/+20
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* Added 'notify' callback for async requests; switched VOL class and infoQuincey Koziol2018-11-281-4/+9
| | | | | | comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
* Switch loc_params to VOL callbacks to pass struct by pointer instead of byQuincey Koziol2018-11-221-42/+42
| | | | value.
* Add info_to_str and str_to_info "management" callbacks for serializing andQuincey Koziol2018-11-211-7/+13
| | | | deserializing a connector's info object.
* Add VOL connector info to the flie access property list returned fromQuincey Koziol2018-11-181-3/+4
| | | | H5Fget_access_plist(). Also, other misc. cleanups, etc.
* Switch switch remainder of API routines to use VOL callbacks.Quincey Koziol2018-11-101-2/+3
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* Switch driver | plugin => connector.Quincey Koziol2018-11-041-87/+87
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* Refactor, standardize, and revise the async request callbacks.Quincey Koziol2018-11-041-15/+26
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* Refactor and standardize object VOL callbacks.Quincey Koziol2018-11-011-3/+3
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