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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-6/+6
| | | | | * Update format source to clang 13 * More format changes
* Support for UnifyFS with MPI_File_sync (#1801)Houjun Tang2022-07-111-0/+54
| | | | | | | | | | | | | | | | | | | | | | | | | * Initial implementation for supporting UnifyFS in HDF5 with MPI_File_sync after write * Committing clang-format changes * Fix format * Fix env variable and return value check * Fix flag retrieve * Fix issues with getting/setting the flag * Fix merge conflicts * Update * Committing clang-format changes * Update based on suggestions * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Add H5_CHECK_MPI_VERSION macro to check for at least MPI version of ↵jhendersonHDF2022-03-301-2/+2
| | | | | | | | | (version, subversion) (#1556) * Fix MPI version check for MPI_Aint_diff usage * Add H5_CHECK_MPI_VERSION macro Adds new H5_CHECK_MPI_VERSION macro to check for MPI library version/subversion pair of at least the specified pair
* Parallel Compression improvements (#1302)jhendersonHDF2022-02-241-0/+233
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* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Updates a comment in H5mpi.c (#863)Dana Robinson2021-07-281-1/+1
| | | MPI_Type_struct() is an MPI-1 call we no longer use.
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* Fix for HDFFV-11109 - Copy MPI comm and info object into output FAPL from ↵jhendersonHDF2021-02-171-1/+1
| | | | | | | H5F_get_access_plist (#342) * Avoid freeing MPI_COMM_WORLD in H5_mpi_comm_free * Copy MPI Comm and Info to new FAPL in H5F_get_access_plist
* Fixes a bit shift issue in an MPI constantDana Robinson2020-10-291-14/+14
| | | | | Redefines TWO_GIG_LIMIT to be INT32_MAX instead of 1 << 31, which fixes an issue revealed by compiling with -Wshift-overflow.
* Clang-format of source filesAllen Byrne2020-09-301-74/+63
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* Trim trailing whitespaceQuincey Koziol2020-04-201-3/+3
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* squash cast warning fixkmu2020-01-231-3/+3
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* fix unused related warningskmu2020-01-131-1/+1
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* Change API names for get/set bitio_count. Also added H5_mpi_set_bigio_count ↵Richard Warren2019-10-231-5/+5
| | | | to H5private.h.
* Another cleanup pass as suggested by the reviewers.Richard Warren2019-10-071-2/+5
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* Fix some typos and remove an unused prototype from H5Sprivate.hRichard Warren2019-10-071-1/+1
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* At the suggestion of the PR reviewers, moved the mpio_create_large_type to ↵Richard Warren2019-10-071-1/+165
| | | | H5mpi.c and renamed the function appropriately. Also moved some support functions to set and get the vvalue where we transistion to using derived datatypes.
* Minor tweaks to new H5P MPI code based on code review feedback.Dana Robinson2019-08-271-9/+12
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* Added H5Pset/get_mpi_params calls and unified them with the MPI-I/ODana Robinson2019-08-261-17/+212
| | | | VFD info in H5FDmpio.c.
* Some refactoring prior to implementing new H5P MPI functions.Dana Robinson2019-08-141-0/+198
* Macro cleanup and obvious warning fixes in parallel code. * Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file and separated it to deal with each MPI type separately.