| Commit message (Collapse) | Author | Age | Files | Lines |
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Code cleanup
Description:
Changed lines like:
H5E_clear(H5E_get_my_stack());
to:
H5E_clear(NULL);
which performs the same operation.
Platforms tested:
h5committested
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Platforms tested: RH 8(simple checkin)
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Bug fix
Description:
When a non-default indexed storage B-tree internal 'K' value is set by the
user, the chunked datasets created in that file (until it is closed) use the
user's 'K' value and the data can be accessed correctly, but the 'K' value is
not stored in the file.
However, once the file is closed and re-opened, the non-default 'K' value
is lost and the data in the chunked datasets will not be able to be accessed
correctly.
Solution:
Store the indexed storage B-tree internal 'K' value in the superblock.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
Change names of macro parameters to H5_ASSIGN_OVERFLOW to make them
easier to understand.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
More tweaks to clean up warnings from lint.
Platforms tested:
FreeBSD 4.8 (sleipnir)
not major enough to h5committest
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Code cleanup
Description:
Clean up various warnings from lint
Platforms tested:
FreeBSD 4.8 (sleipnir)
no major changes requiring h5committest
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Bug fix
Description:
MPE instrumentation was out of date and wasn't reporting the correct name
of the API functions in the library.
Platforms tested:
IBM p690 (copper)
h5committest not performed because it doesn't test MPE.
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Twist code
Description:
Try to find a happy definition of HSSIZET_MAX, HSSIZET_MIN and HSIZET_MAX
for all platforms.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committested
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Code cleanup
Description:
Fix HSIZET_MAX, HSSIZET_MAX and HSSIZET_MIN to work with Windows (hopefully)
Platforms tested:
h5committested
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Code cleanup
Description:
Tweak HSIZET_MAX macro and add HSSIZE_MAX and HSSIZET_MIN macros.
Platforms tested:
FreeBSD 4.8 (sleipnir) w/C++
FreeBSD 4.8 (sleipnir) w/parallel
h5committested
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Code cleanup (sorta)
Description:
Updated to new copyright information as I browsed these files.
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New feature for developers.
Description:
Added "function stack" tracing to library. This allows developers (there
is no public API) to call H5FS_print within the library and get a listing
of the functions traversed to reach that point in the library. Eventually,
I may add support for reporting the parameters to each function also...
Mainly for debugging parallel I/O programs, but I think it will come in
handy in other cases also.
The function stack tracking is controlled with a configure switch:
--enable-funcstack, which defaults to enabled currently. When we branch
for 1.6, we should change the default setting on the branch to be disabled.
Also, added a destructor to the thread-specific keys when thread-safety is
turned on in the library. Otherwise, they were leaking memory and causing
difficult to debug errors in threaded programs (like the test/ttsafe test).
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir) w/thread-safety enabled.
Misc. update:
Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h)
Update release_docs/RELEASE with thread-safety bug fix.
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Purpose:
Change some macros to make windows happy
Description:
Currently no srandom and random functions on windows,
Function gethostname cannot be resolved when DLL turned on
Solution:
use srand and rand to replace srandom and random
turn off the option to check gethostname
Platforms tested:
windows 2000, linux 2.2.18smp
Misc. update:
Update MANIFEST if you add or remove any file.
Update release_docs/RELEASE for bug fixes, new features, etc.
Update applicable document files too.
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Code cleanup
Description:
Fix preprocessor macros to declare variables correctly.
Platforms tested:
MS Visual Studio
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Code cleanup
Description:
Various code cleanups to allow the development branch to be compiled with
a C++ compiler (i.e. CC=g++ )
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir) C++
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Code improvement
Description:
Add extra pair of braces to API versions of FUNC_ENTER/FUNC_LEAVE macros,
to make API <-> non-API mismatches obvious.
Platforms tested:
FreeBSD 4.7 (sleipnir)
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Code cleanup/new feature.
Description:
Split FUNC_LEAVE into API and non-API specific versions. This allows a
solution to compiling this branch with C++, as well as reducing the size
of the binaries produced.
Platforms tested:
FreeBSD 4.7 (sleipnir) w/serial, parallel (including MPE) & thread-safe
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Code cleanup
Description:
Clean up a few more warnings and update dependencies.
Platforms tested:
Linux 2.2.18smp (eirene) serial & parallel
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new feature
Description:
Added MPICH/MPE instrumentation support.
All source code are bracketed by the macro H5_HAVE_MPE.
Use "--enable-mpe" to configure it in.
Currently only worked in Eirene because the MPE library is
not installed in all machines yet.
The added file, H5MPprivate.h, holds HDF5/MPE related defintions.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}? Yep.
Other platforms/configurations tested?
--enable-mpe feature tested in Eirene.
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Purpose:
Fix bugs for windows platform.
Description:
1. Update HDlseek for windows
2. Update H5Otime.c for normal time(non-daylight time)
3. Add H5_DLL in front of two functions so that windows DLL can work.
Solution:
Platforms tested:
windows 2000, eirene(since most updates have WIN32 around it, not need to test other platforms)
Misc. update:
Update MANIFEST if you add or remove any file.
Update release_docs/RELEASE for bug fixes, new features, etc.
Update applicable document files too.
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code warrior fix
CW does not recognize the _stati64 type, changed HDstat macro accordingly
Platforms tested:
windows 2000 (MSVC, Code warrior)
linux
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Purpose:
__DLL__ is a keyword in some platforms and __DLL__ is also defined as a macro for windows DLL applications.
That causes problems.
Description:
Solution:
Use H5_DLL*** to replace __DLL***__ at all header files.
Change the macro defination at H5api_adpt.h.
Platforms tested:
linux2.2.18smp, irix64, solaris 2.7 and windows 2000
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Code cleanup
Description:
Changed the last HRETURN* statements in the FUNC_ENTER macros into HGOTO*
macros, which reduces the size of the library binary in certain
configurations by another 10%
Platforms tested:
FreeBSD 4.6 (sleipnir) serial & parallel, IRIX64 6.5 (modi4) serial &
parallel
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Purpose:
Merged from 1.4 branch
Description:
API tracing improvements
Platforms tested:
Linux (--disable-hsizet didn't work before my changes and still doesn't
work, but --enable-hsizet is fine).
Note: This checkin includes temporary code in H5FDmpiposix.c to turn
off GPFS byte range token prefetches on ASCI/Blue. Once the HDF5 API
supports the necessary prerequisite functionality this temporary code
can be migraged up above HDF5.
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Bug Fix
Description:
It was possible to create corrupted metadata information (either in memory
or in the file or both) with a parallel I/O program because of the way
metadata writes were being handled for writes out of the metadata cache.
Solution:
Added a dataset transfer property called "block before metadata write"
which is used by the MPI-I/O and MPI-posix drivers to sync up all the
processes before attempting a metadata write. This property is currently
only for metadata writes from the metadata cache.
Platforms tested:
IRIX64 6.5 (modi4) w/parallel
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Code cleanup
Description:
Changed a few direct calls to posix functions to use proper wrapper macros.
Also, changed method of extending file to use ftruncate().
Platforms tested:
FreeBSD 4.6 (sleipnir) && IRIX64 6.5 (modi4)
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New feature
Description:
Add support in for "dmalloc" debugging malloc library to configure script
and library headers.
Platforms tested:
IRIX64 6.5 (modi4) and FreeBSD 4.6 (sleipnir)
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Code cleanup
Description:
Broke the FUNC_ENTER macro into several macros, with more specialized
uses (which followup mail will describe). This was designed to move
most/all of the checks which could be done at compile time to that point,
instead of needlessly performing them (over & over :-) at run-time.
This reduces the library's size (and thus staticly linked binaries) and
has a minor speedup effect also.
Platforms tested:
IRIX64 6.5 (modi4) with parallel & FORTRAN enabled, and additional testing
on FreeBSD and Solaris immediately after the checkin.
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Code cleanup.
Description:
Took Robb's recent ideas for improving the FUNC_ENTER/FUNC_LEAVE macros
equivalents in the SAF library and adapted them to our library. I added
an additional macro which is equivalent to FUNC_ENTER:
FUNC_ENTER_NOINIT - Has the API tracing code, etc. from FUNC_ENTER but
none of the library or interface initialization code. This is to
be used _only_ for static functions and those which explicitly
cannot have the library or interface initialization code enabled
(like the API termination routines, etc.).
This allowed many more of the functions in the library [but not all yet :-(]
to be wrapped with FUNC_ENTER[_NOINIT]/FUNC_LEAVE pairs.
It also reduced the size of the library and executables (by cutting out a
bunch of code which was never executed), I'll e-mail the exact results when
I've finished editing it.
Platforms tested:
IRIX64 6.5 (modi4)
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Code cleanup
Description:
Clean up warnings on IRIX64 6.5 (modi4)
Platforms tested:
IRIX64 6.5 (modi4)
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Purpose:
eliminate warnings on win32
Description:
some conversion warnings were being issued
Solution:
added some type casts
Platforms tested:
w2000, linux
changed the HDmemset to include a cast in win32; this was just to eliminate a compiler
warning. probably the macro can also be used in unix
#ifdef WIN32
#define HDmemset(X,C,Z) memset((void*)(X),C,Z)
#else /* WIN32 */
#define HDmemset(X,C,Z) memset(X,C,Z)
#endif /* WIN32 */
the list of previous warnings was
D:\disk_w\hdf5\src\H5FDstdio.c(659) : warning C4244: 'initializing' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Fcontig.c(435) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Fcontig.c(497) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Fcontig.c(915) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Fcontig.c(982) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(912) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(995) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(1936) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(2019) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(2862) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(2864) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(2948) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(3690) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(3692) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(3776) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Shyper.c(5167) : warning C4244: '+=' : conversion from '__int64 ' to 'unsigned int ', possible loss of data
D:\disk_w\hdf5\src\H5Tvlen.c(371) : warning C4244: '=' : conversion from 'unsigned __int64 ' to 'unsigned int ', possible loss of data
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Removed unused code that is related to inline issue.
hdf5 C source now uses H5_inline for the non-standard
inline feature. No need to undefine/redefine the symbol
inline itself.
Platforms tested:
eirene.
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Purpose:
updated some comments regarding Code Warrior , removed other debugging comments
Platforms tested:
w2000
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Bug Fix
Description:
Add TRACE8 and TRACE9 macros
Platforms tested:
FreeBSD 4.5 (sleipnir)
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Migrate from configure macros of XYZ_ABC to H5_XYZ_ABC
Description:
configure generates many macros definitions on the fly and
were stored in src/H5config.h which is included by H5public.h.
But other software that uses hdf5 may also run their own configure.
There can be a clash in macro name space. We decided awhile ago
to prepend all generated macros with "H5_" to avoid conflicts.
The process has started and this commit completes it (at least attempt
to).
Solution:
Many macros symbols (e.g. SIZEOF_xxx and HAVE_xxx were changed to
H5_SIZEOF_xxx and H5_HAVE_xxx). Then H5private.h no longer includes
H5config.h. This cuts H5config.h away from HDF5 source code.
Pending issues:
The module of fortran and pablo are to be resolved in a different
commit.
Platforms tested:
eirene (parallel), arabica (solaris 7 --enable-fortran, --enable-cxx)
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Purpose:
update macro HDstat
Description:
The original defination of HDstat only defines HDstat as stat.
the file size defined at struct stat is int32,
However for files greater than 4G(or 2G)file, lookup of file size will
fail on windows when using stat. Add a macro for windows,define HDstat
as istat64.
This fix is the same as HDfstat macro.
Solution:
Platforms tested:
linux 2.2.18
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Code cleanup
Description:
Platform dependent code related to the struct stat and fstat
calls polluted source codes. Hard to maintain.
Solution:
Platform dependent code are moved to H5private.h and then internal
code can #include H5private.h. Repeat those macro definition for
the stdio and multi drivers since they area examples for writing
a virtual file driver. They must not use any internal code.
Platforms tested:
eirene (parallel), modi4 (serial including gass driver.)
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Purpose:
fix a windows bug
Description:
1. To create a >4GB file, fstati64 has to be used instead of fstat.
change fstat to fstati64 for WIN32 macroes. Some discussions are going on
the general issue on how to better handle with WIN32 or other similar platform.
This check-in is just a reminder not to forget the windows bug.
2. erase a WIN32 macro(include winsock2.h) at h5detect.c. It is not a problem now.
Solution:
use fstati64 instead of fstat for win32.
Platforms tested:
windows2000(confirmed at linux machine eirene)
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Code cleanup
Description:
Tweaked internal error handling macros to reduce the size of the library's
object code by about 10-20%.
Also cleaned up some compiler warnings...
Platforms tested:
FreeBSD 4.4 (sleipnir)
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Bug fix
Description:
Fix typo which caused thread-safe tests to fail over the weekend.
Platforms tested:
IRIX64 6.5 (modi4) with thread-safe code enabled.
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Code cleanup
Description:
Added macro to check for overflows when assigning a value to a variable
which requires a cast down in size or precision.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Code cleanup
Description:
Clean up thread-safety macros and neaten up code.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Purpose:
1. temporarily fixed mtime test when daylight saving changes on windows.
2. move H5_inline defination for win32 to windows H5pubconf.h at H5private.h.
Description:
1. the mtime test is not working when the daylight saving ends. Hard-coded back to the correct time. Need to find a universal solution later.
2. Move H5_inline defination for win32 at H5private.h into windows specificed H5pubconf.h so that windows maintenance can be more easy to handle.
Solution:
see above.
Platforms tested:
windows 2000, confirmed at Linux Red Hat 6.2.
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Code cleanup (sorta)
Description:
When the first versions of the HDF5 library were designed, I remembered
vividly the difficulties of porting code from a 32-bit platform to a 16-bit
platform and asked that people use intn & uintn instead of int & unsigned
int, respectively. However, in hindsight, this was overkill and
unnecessary since we weren't going to be porting the HDF5 library to
16-bit architectures.
Currently, the extra uintn & intn typedefs are causing problems for users
who'd like to include both the HDF5 and HDF4 header files in one source
module (like Kent's h4toh5 library).
Solution:
Changed the uintn & intn's to unsigned and int's respectively.
Platforms tested:
FreeBSD 4.4 (hawkwind)
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Bug fix.
Description:
On some systems (linux when not using gcc) 'dev_t' is not actually
a scalar variable. This causes the code which compares dev_t's in
the file drivers to not compile. Also the H5_inline flag was not being
set correctly in the H5private.h file.
Solution:
Set the H5_inline flag to '' (i.e. define it, but don't assign it a value)
if it is not currently defined.
Use DEV_T_IS_SCALAR flag from configure to correctly compare dev_t's using
memcmp instead of a scalar flag.
Platforms tested:
FreeBSD 4.3 (hawkwind), Linux 2.4.2 (chiba city cluster at Argonne)
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added a include for io.h that was missing
Description:
Solution:
Platforms tested:
NT
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Purpose:
updated windows headers in these 2 src files
Description:
Solution:
Platforms tested:
NT:
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Code cleanup
Description:
File driver macros were defined in this file, instead of the file driver
source file.
Solution:
Removed redundant file driver information, which is already in each file
driver source file.
Platforms tested:
FreeBSD 4.3 (hawkwind)
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Purpose:
Code Cleanup
Description:
Updating CodeWarrior Port
Solution:
Move around some Windows and Metroworks ifdefs, etc.
Platforms tested:
Solaris 2.7 (arabica) Linux 2.2 (eirene)
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