| Commit message (Collapse) | Author | Age | Files | Lines |
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Bug 1536, this include is needed to supply the _getcwd() function.
Tested: XP 32 VS2005
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Add infrastructure & tests for "flush dependencies" in metadata cache,
which allow relationships that specify which order to flush metadata entries in.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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replacing all instances with long long.
Tested:
h5comittest
fedora 10 x64
Vista 32, VS2005, IVF101
XP32, Cygwin
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Tested on jam. Tested v1.8 on OpenVMS.
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Fix various problems with a the core & sec2 VFDs.
Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Add base support for extensible array "data blocks" to code, tests and
h5debug.
Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Initial checkin of extensible array data structure prototype code and
regression tests.
Initial definitions for revised FUNC_ENTER/LEAVE and error reporting
macros, which are being vetted in the extensible array code.
Minor warning and formatting cleanups in other sections of code.
Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Add a "HDcompile_assert" macro for assertions that can/should be checked
at compile time, as opposed to run time. (And used it for a couple of simple
cases, to begin)
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.5.3 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Description:
On Windows, the pthread_self function cannot be used to print the returned thread ID for debugging. Instead, we need a separate function, GetCurrentThreadId. To eliminate some Windows ifdef's in the code, we create two new function macros which can be used by all platforms. It is conditionally defined in H5win32defs.h, and globally in H5private.h.
Tested:
VS2005 w/ pthreads on WinXP
kagiso w/ pthreads
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Description:
Forgot to change the filename reference in H5private.h. This update fixes it.
Tested:
kagiso
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Description:
In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about.
Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h.
This checkin also cleans up various source files to use the HD* macros when possible.
Tested:
VS2005 on WinXP
VS.NET on WinXP
h5committest (kagiso, linew, smirom)
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New fortran wrappers added.
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remove HDputenv() from external_link_env() test
(will add script later to set HDF5_EXT_PREFIX for running the test)
modify and add more comments
2. src/H5private.h: remove #define for HDputenv()
Tested on kagiso, linew and smirom.
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2. test/links.c: fixed one external link test to be the same as in 1.8.
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H5_DLL herr_t H5_build_extpath(const char *, char **/*out*/);
makes this stupid warning in windows that gets repeated in every source file
c:\_pvn\hdf5\src\h5private.h(958) : warning C4138: '*/' found outside of comment
changed signature to
H5_DLL herr_t H5_build_extpath(const char *, char ** /*out*/ );
compiler is happy now
tested: windows, linux
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(solaris did not support setenv() and unsetenv())
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1. src/H5F.c, src/H5system.c: formulate path for mainfile
2. src/H5Lexternal.c: add search for target file
3. configure.in: add H5_HAVE_WINDOW_PATH
4. test/links.c: add tests for external link
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- Add hash value for skip list string types, to reduce # of string
comparisons.
- Fixed bug with metadata/small data block aggregator adding size == 0
block into file free space list.
- Refactored metadata/small data block aggregator code into single set of
common routines.
- Changed block aggregator code to be smarter about releasing space in the
'other' block when the 'other' block has aggregated enough data.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Add H5Lvisit_by_name() API routine to library.
Eliminated all (five!) other group traversal routines and changed them
all to use the new API routine.
Cleaned up output of h5ls & h5stat:
- Issue error when requesting recursive traversal of a file
with the "group info" flag, but no group given
- Print info about root group in all(?) appropriate situations
- Don't print "verbose" information about root group until the
root group is in the list of objects to display
(mostly because h5ls & h5stat had a different twist on traversing the
groups in a file that the other utilities)
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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Move H5Gget_objinfo() to deprecated symbols section and retarget
internal usage to H5Lget_info()/H5Oget_info().
Misc. other code cleanups...
Tested on:
FreeBSD/32 6.2 (duty)
FreeBSD/64 6.2 (liberty)
Linux/32 2.6 (kagiso)
Linux/64 2.6 (smirom)
AIX/32 5.3 (copper)
Solaris/32 2.10 (linew)
Mac OS X/32 10.4.10 (amazon)
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Description:
Windows does not accept the buffer size parameter of setvbuf to be less than 2. Previously, we had our fix split between two files, H5private.h and the Windows H5pubconf.h. This was a problem for MinGW, because it generates its own H5private.h. This moves the fix out of H5pubconf.h and into H5private.h.
This shouldn't affect other platforms.
Tested:
MinGW on WinXP
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WIN32, so I've standardized all #ifdef's to use _WIN32. This should not affect any other platform.
Tested:
Visual Studio (32- and 64-bit) on Win XP
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Updated command files; added "extern "C"" for HDremove_all function.
Platforms tested:
VMS server; kagiso - very minor and affects only VMS
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if available, to support big
files. 2. added a check in test/big.c to make sure the system supports big file.
Tested on smirom because already tested the same changes for v1.6 on liberty, smirom,
copper, and sol.
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instead of char *
This function is only used on VMS
Platforms tested:
kagiso, VMS is still going.
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Fix error introduced into driver info block size computation, which caused
the test/big test to fail.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Further cleanups to superblock code:
- Move most of the ISOHM-specific code into the H5SM module
- Make only one checksum, for combined superblock & driver info
block
Minor other cleanups, etc.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 6.2 (duty)
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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since it's now
used in H5Opublic.h.
This should fix build errors on Windows.
Tested on kagiso; will test on Windows immediately after checkin.
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Get rid of two different types of fill value struct (merge H5O_fill_t
and H5O_fill_new_t) and clean up & simplify dataset initialization code.
(In preparation for shared object header message method call
refactoring).
Tested on:
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
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version of
superblock).
Tried to standardize sizes and added #defines to H5Fpkg.h so that hopefully
the code is a little easier to read.
Of course this is a file format change.
Tested on Windows, juniper, smirom, kagiso.
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When using the latest version of the file format, move the "modification
time" information into the object header prefix, which is more efficient.
Also add "access time" and "change time" (for metadata) fields, all of which
take about the same space as the previous modification time header message.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Move the definition of the typedef for uint64_t from H5private.h to
H5public.h (to fix Windows builds)
Tested on:
None - just eyeballed.
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This feature is still in progress; Shared Object Header Messages are not
complete as a feature and are not thoroughly tested. There are still
"TODO" comments in the code (comments with the word "JAMES" in them,
so as not to be confused with other TODO comments).
Hopefully this checkin will reduce the liklihood of conflicts as I finish
implementing this feature.
All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
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Add H5Lget_name_by_idx routine & tests
Move more H5G routines to deprecated API file
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & enable_compat1.6
AIX/32 5.? (copper) w/parallel & FORTRAN
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Make API routines that don't initialize the library more consistent, to
help with future internal library changes.
Tested on:
Linux/64 2.6 (chicago2)
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partial I/O for reading data
may not work well for Direct I/O because of the requirement for data alignment. Took it out.
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Add 'initval' parameter to "lookup3" checksum routine (and implicitly to
the metadata checksum routine), to allow chaining several checksums together
easily (which isn't used by these modules, but will be used in my next checkin)
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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int64_t is only
defined in H5private.h.
Moved definition of int64_t from H5private.h to H5public.h as a temporary
solution.
Tested on heping and Windows (windows also needed H5Gdense.c and H5Gbtree2.c
to be added to hdf5 project).
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Add 'loookup3' checksum routine and switch to using it for metadata
checksums - it's just as "strong" as the CRC32 and about 40% faster in general
(with some compiler optimizations, it's nearly as fast as the fletcher-32
algorithm).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Add a CRC algorithm to the library, initially for "small" (<256 byte)
metadata blocks.
Update checksum tests to verify it's working correctly.
Tested:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
(Will be testing on more platforms after checkin)
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Provide more abstract internal routine for computing checksums on metadata
in a file. This will allow a unified policy on which algorithm to choose and
under what criteria (length probably) to be more easily maintained.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Break out a bunch of the misc. routines that were in src/H5.c into more
specific modules.
Add optimized fletcher32 checksum routine, for checksumming metadata as
well as raw data.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Will test further after checkin...
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Users can create external links using H5L_create_external(). These links
point to an object in another HDF5 file. Users can alter the behavior of
external links or create new kinds of links by registering callbacks
using the H5L interface.
Added tests, tools support, etc.
Also a number of other, minor changes have been made (some restructuring of
the H5L interface, for instance).
Additional documentation and examples are forthcoming.
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Code cleanup
Description:
Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.
Platforms tested:
None necessary, whitespace only change
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Code checkpoint
Description:
Checkpoint fractal heap improvements, as well as move the free space
manager code that it's using into a separate package.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4/64 (mir) w/C++ & FORTRAN
Linux 2.4/32 (heping)
Solaris 2.9 (shanti)
AIX 5.? (copper) w/FORTRAN & parallel
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Bug fix.
Description:
Some machines (e.g., HPUX) will have off64_t defined but no support
for stat64 unless certain LargeFile macro is turned on. This caused
the last fix on H5private not quite right which caused compiling failures.
Solution:
Added stat64 and fstat64 tests and then will use them only if they
are supported.
Platforms tested:
Tested on kelgia, copper and heping (pll).
(Compiling alright but tests for kelgia and heping are not done.
expect no problems.)
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bug fix.
Description:
Previous H5private.h would attempt to use the off64_t/stat64/etc
by checking just sizeof __INT64 being 8. This caused errors in
some machines like alpha cluster which is a 64bit machine. Its
compiler supports the type __int64 but it does not support
off64_t since its off_t is already 64bits big. The above code
casued the compiler to complain about the unknown off64_t and
such.
Solution:
H5private.h:
Changed the code to use the pseudo standard of off64_t/stat64/etc
only if sizeof(off_t) is not 64 bits AND sizeof(off64_t) exists
and is 64 bits. This assumes if off64_t is defined, all those
stat64, fstat64, etc are supported too.
configure.in:
configure:
Added the testing of sizeof(off64_t) to support the above solution.
Platforms tested:
h5committested. Also tested at LANL QSC.
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