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* Add maps implementation (based on a patch supplied by MohamadNeil Fortner2017-05-111-0/+2
| | | | Chaarawi). Add h5dsm_map.c example. Other minor fixes/cleanup.
* Initial implementation of dataset create/open/close, transactions. NotNeil Fortner2016-11-141-0/+4
| | | | | working on boro, though it is unclear if that is due to a pug in this code or in daos.
* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-60/+43
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| * [svn-r29395] Corrected parentheses in floating-point compare macros.Dana Robinson2016-03-121-8/+9
| | | | | | | | | | | | | | Corrected H5_EB and H5_PB macros. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Java, Fortran, & C++
| * [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-1/+5
| | | | | | | | | | | | | | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
| * [svn-r29084] Revert of:Dana Robinson2016-02-111-5/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
| * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-0/+3
| | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| * [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-041-1/+5
| | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| * [svn-r29030] Cleanup of test/externals before merging user patch.Dana Robinson2016-02-021-1/+3
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial autotools
| * [svn-r29019] Fixed double declaration of a few types that only appears on ↵Dana Robinson2016-01-291-1/+7
| | | | | | | | | | | | Windows. Tested on: 64-bit Windows 10 with VS 2015 Pro
| * [svn-r29011] LFS changes in the autotools and library.Dana Robinson2016-01-281-51/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * We assume that fseeko and ftello exist. * The *64 IO functions and types are no longer explicitly used. We now rely on a mapping provided by _FILE_OFFSET_BITS (or its equivalent). * _LARGEFILE(64)_SOURCE is no longer exposed via AM_CPPFLAGS. The CMake files have not yet been updated but CMake is still functional. The CMake configure files will just run a few unecessary tests and create unneeded #defines until they are updated in a few days. Tested on: Linux, OS X, Solaris, z/OS
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-0/+1
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-16/+92
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28581] Brought flock changes over from revise_chunks as well as a fewDana Robinson2015-12-111-1/+73
| | | | | | | | | | | | | | minor tweaks from H5private.h. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only, autotools and CMake (3.3.2)
| * [svn-r28422] Description:Quincey Koziol2015-11-201-7/+16
| | | | | | | | | | | | | | | | | | | | Revert most of r27549, since revise_chunks code requires debugging contexts for v2 B-trees. Also, misc. warning cleanups and alignments w/changes on revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28416] Description:Quincey Koziol2015-11-201-8/+3
| | | | | | | | | | | | | | | | | | Refactor time conversion code to put all the system-specific changes into one routine, H5_make_time, in H5system.c. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r28288] merge from trunk.Mohamad Chaarawi2015-11-051-4/+12
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| * [svn-r28241] Correct prototype return signature.Allen Byrne2015-10-281-1/+1
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| * [svn-r28236] Rework get timezone function to add another exclusion define ↵Allen Byrne2015-10-271-2/+10
| | | | | | | | | | | | | | (H5_HAVA_TM_GMTOFF). Also needed to add prototype - followed lead of HDrand. Tested linux and windows
| * [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-10-201-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | available Fix tests accordingly and fix misuse of hbool_t in various places Fix initialization of H5Pgcpl/ocpl structs in property decoding routines Tested on: Linux/32 (jam) Linux/64 (platypus) Linux/PPC64 (ostrich) MacOSX/64 10.11
* | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-051-0/+3
|\ \ | |/ | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-353/+413
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-317/+375
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
| * [svn-r27753] Removed duplicated attribute macro checks. Moved canonical ↵Dana Robinson2015-09-101-3/+14
| | | | | | | | | | | | | | | | | | attribute macro checks from src/H5api_adapt.h to H5private.h, which is where they belong anyway. Tested on: h5committest (manually inspected for attribute warnings)
| * [svn-r27581] Fixed a bug in the FUNC_ENTER macros. API calls of the form ↵Dana Robinson2015-08-261-3/+18
| | | | | | | | | | | | | | | | H5xx_* were flagged as H5XX_, which is a non-public API form. Tested on: h5committest
| * [svn-r27572] Removed VMS-specific code from the library.Dana Robinson2015-08-241-30/+5
| | | | | | | | | | | | | | | | | | The only remaining code consists of a few floating-point tests that rely on pre-generated and checked-in VMS files. These have been left alone, even though they will not be possible to recreate, since testing VMS float behavior is still important. Tested on: h5committest
| * [svn-r27548] Revert r27545Jerome Soumagne2015-08-211-2/+2
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| * [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if ↵Jerome Soumagne2015-08-211-2/+2
| | | | | | | | | | | | available Fix tests accordingly
* | [svn-r27286] merge from trunk.Mohamad Chaarawi2015-06-261-5/+16
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| * [svn-r27278] Merge of 27270 from trunk. Fixes HDFFV-9119 and HDFFV-9421.Dana Robinson2015-06-241-5/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | Changes that allow the autotools to correctly deal with inline functions. - Inline markup schemes are now checked with AC_COMPILE_IFELSE tests instead of AC_C_INLINE. - The inline designator is now H5_INLINE instead of H5_inline. This is now set in H5private.h instead of H5pubconf.h. Tested on: h5committest
* | [svn-r27141] merge from trunk.Mohamad Chaarawi2015-06-031-8/+3
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-8/+1
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
| * [svn-r27111] move undef of __attribute__ back to private and remove its ↵Mohamad Chaarawi2015-05-261-0/+2
| | | | | | | | usage from public routines.
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-2/+5
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| * [svn-r27045] Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-orderedDana Robinson2015-05-101-2/+5
| | | | | | | | | | | | the arguments to be in a more logical order. Tested on: h5committest
* | [svn-r26724] - merge from trunk & fix conflicts.Mohamad Chaarawi2015-04-031-9/+49
|\ \ | |/ | | | | | | - fix bug in opending an already open named datatype. - fix dynamically loaded VOL plugin support with new changes coming in.
| * [svn-r26678] add ifdef checks and setting for __attribute__ in a public ↵Mohamad Chaarawi2015-03-311-5/+2
| | | | | | | | | | | | place to allow usage in public routines.
| * [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.Dana Robinson2015-03-011-0/+42
| | | | | | | | | | | | | | | | | | | | | | | | - Adds 'F' suffixes for most float constants. - A few constants MUST be of type double. These now receive the long double L suffix and are then cast to double. I do this via a new H5_DOUBLE() macro which was added to H5private.h. Fixes: HDFFV-9148 Tested on: h5committest
| * [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-231-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
| * [svn-r26272] Merge of r26071 from features/autotools_reworkDana Robinson2015-02-221-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | Removes the --with-default-vfd option from configure. This was basically useless and only allowed selecting the stdio VFD. Since this is a demo VFD and not really a production VFD, we decided to retire this option. Fixes: HDFFV-9081 Tested on: h5committest NOTE: platypus cmake fails, but this is not a new error.
| * [svn-r26203] increase string size to 128 for MPE function event name.Mohamad Chaarawi2015-02-181-1/+1
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* | [svn-r26185] merge from trunk.Mohamad Chaarawi2015-02-161-18/+19
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| * [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-161-18/+19
| | | | | | | | | | | | | | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-1/+4
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| * [svn-r25215] Description:Quincey Koziol2014-05-251-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r20914: Use HDstrncpy and HDstrncat! --gh 20915: Use HDstrncpy and HDstrncat! --gh Tested on: Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel (too minor to require h5committest)
| * [svn-r24961] Updates to Win32 thread-local storage cleanup when the ↵Dana Robinson2014-04-041-1/+1
| | | | | | | | | | | | | | | | | | | | | | thread-safe library is built on Windows. Previously, thread-local storage was not cleaned up, causing resource leaks. Fixes HDFFV-8518, HDFFV-8699 As a part of these changes, the thread-safe + static library options are declared unsupported since the solution relies on DllMain. A solution for the static library is probably doable, but requires much more complicated surgery and has been deferred to HDF5 1.8.14. Tested on: 64-bit Windows 7 using VS 2012 (changes only affect Windows)
* | [svn-r24940] merge from trunk.Mohamad Chaarawi2014-04-011-21/+2
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| * [svn-r24803] Description:Quincey Koziol2014-03-161-19/+0
| | | | | | | | | | | | | | | | | | | | | | | | Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from src/H5private.h to src/H5public.h. Wrap typedef of hsize_t and hssize_t in DIAG_OFF(long-long) macros. Clean up a bunch of "macro '-' is unused" warnings. Tested on: Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel (too minor to require h5committest)
| * [svn-r24769] Description:Quincey Koziol2014-03-071-2/+2
| | | | | | | | | | | | | | | | | | Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (h5committest forthcoming)
* | [svn-r24343] add definition for H5TRACE12.Mohamad Chaarawi2013-10-231-0/+1
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